Os01g0648000

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Revision as of 04:51, 25 June 2012 by 127.0.0.1 (talk) (Created page with "{{JaponicaGene| GeneName = Os01g0648000| Description = Similar to AKT1-like potassium channel| Version = NM_001050248.1 GI:115438866 GeneID:4326245| Length = 6425 bp| Def...")
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Gene Name

Os01g0648000

Description

Similar to AKT1-like potassium channel

Version

NM_001050248.1 GI:115438866 GeneID:4326245

Length

6425 bp

Definition

Oryza sativa Japonica Group Os01g0648000, complete gene.

Source

Oryza sativa Japonica Group

 ORGANISM  Oryza sativa Japonica Group
           Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
           Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; BEP
           clade; Ehrhartoideae; Oryzeae; Oryza.
Chromosome

Chromosome 1

Location

Chromosome 1:27875587..27882011

Sequence Coding Region

27875899..27876821,27877169..27877244,27877342..27877539,27877967..27878151,27878237..27878270
,27878430..27878528,27878624..27878869,27878970..27879287,27879373..27879430
,27879610..27879975,27881438..27881742

Expression

GEO Profiles:Os01g0648000

Genome Context

<gbrowseImage1> name=NC_008394:27875587..27882011 source=RiceChromosome01 preset=GeneLocation </gbrowseImage1>

Gene Structure

<gbrowseImage2> name=NC_008394:27875587..27882011 source=RiceChromosome01 preset=GeneLocation </gbrowseImage2>

Coding Sequence

<cdnaseq>atggcgaggtggggcgccgctcggatggcggcgtgcgggccgtggggccgcaaccggagggtcggcgccggcgacgcgttcgaggccagcgaggtgaggcgggacgggcgcagcaggatgatgcccgcgtgcgggccgtggggggcgggccatggcggcggggacccggcgctcgagagggagctgtcgcgggacggcagccactacagcatctccagcgccatcctcccgtcgctcggcgcgcggagcaaccgccgcatcaagctccgccgcttcatcatctccccctacgaccgccgatacagaatctgggagactttcctcatagttcttgtagtctactctgcgtgggtctcaccatttgaatttggcttcattccgaagcctacgggggctctagctacagccgacaatgtggtgaatgcattcttcgcggttgacatcattctgaccttctttgtggcttatttggataaaatgagctatatgcttgaagatgatccaaagaagatcgcatggcgttatagtaccacatggcttgttcttgacgtggcctccaccatcccatcagaatttgctcgcaggatactaccttcaaagcttaggtcatatggatttttcaacatgcttcgtctgtggcgtctccgcagagtcagctctctgttttctaggttggagaaggatagacacttcaattacttctgggttcgatgtgcaaagctcatttgtgtcacactttttgctgtgcactgtgcggcatgcttctactatcttcttgctgataggtaccccgtcccaacttctacgtggattggcaattacatggcagatttccatgaacggagcttatggattcgctacgtaacatcagtctattggtcaatcaccactcttaccaccgtgggctatggggatctacatgcagaaaatacaagggagatgatcttcaacattttctacatgctctttaaccttggtttgaccgcttatttgatcggtaacatgaccaatttggttgtccatggcactagtcgtactcgaaactatagggatacaatccaagcagcaacaagctttggagtaagaaatcagctaccacctcggctgcaagatcagatgatttcacatattagcttaaaatacaggacagattcagaaggtcttcaacaacaagagatccttgattcactgcctaaagctattaaatctagcatttctcaatatctgttcttccatctggttcaaaatgtttacctgtttcaaggagtctcaaatgatctgatttttcaactggtttcggagatgaaagctgaatattttccacctagggaggatgtgattttgcagaatgaagcacccactgacttctacatcttagtttctggtagtgtggagttagtagagcagcaaaatggtgcagaccaggtgatacaagtggctacgtcaggagaggttgttggagaaattggggttctttgctacagacctcagctattcacagttcgaacaagatccttgtgccagttgttgcgtttgaatcgtacagcttttctcagcattgttcaatccaatgttggggatggaactatcataatgaacaaccttattcagttccttaaagagcagaaggagaacagtgtaatggctggtgtcgtaaaggagatagagagtatgctagctcggggaaatctggatttgccaattacactctgttttgcagtaactagaggagatgattttttgttgcatcaacttcttaagcgtggtatggatccaaatgagtcagataatgacgggcataccgcactgcatatagctgcttccaaaggaaacgagcaatgcgtcaggcttctattagaatatggagctgatccaaatgccagagactcagaaggaaaagttccactgtgggaagcgctgtgtgagaagcacgccgccgtcgtgcaactattagtcgaaggcggcgcggatctgtcgtcgggtgacacgggcttatacgcttgcatcgccgtggaggagagcgacaccgagctgctcaacgacatcattcactacggaggcgacgtgaacagggctcgccgggacgggaccaccgccctgcaccgcgccgtctgcgacggcaacgtccagatggccgagctcttgctggaacacggagccgacatcgacaagcaggacggcaacggctggaccccgagagccctcgccgagcagcagggccacgacgacatccagctcctgttccggtcgcgcaaggcggcgacggcgagtggccaccatcacgtcccaagctccaccaccaccagggtggcgccggcggcggcggcggcatcactgatcgggaggttcaacagcgagcccatgatgaagaacatgatccacgaagacgccgacctgcccagccgggttctccccgagaagctccggaggaagcgggtcaccttccagaactccctcttcggggtcatctcgtcgtcgcaggcgcagcgggagaccgaccacccgctctcgaggggtggcctcgcggcgacgggctccccgaacccgagcagcggcagccgcaacgccgtcatcagggtgacgatcagctgccccgagaaagggaacaccgccgggaagctcgtgctcctgcctcagacgctggacatgctcctcgagctcggcgccaagaagttcgacttcgcgccaaccaaggttctcaccgtggagggcgccgaggttgacgaggtggagctcatcagagacggcgatcatcttgtgctcgtcagtaatgaatgggatgcagagaagatgaaaggcaagagctag</cdnaseq>

Protein Sequence

<aaseq>MARWGAARMAACGPWGRNRRVGAGDAFEASEVRRDGRSRMMPAC GPWGAGHGGGDPALERELSRDGSHYSISSAILPSLGARSNRRIKLRRFIISPYDRRYR IWETFLIVLVVYSAWVSPFEFGFIPKPTGALATADNVVNAFFAVDIILTFFVAYLDKM SYMLEDDPKKIAWRYSTTWLVLDVASTIPSEFARRILPSKLRSYGFFNMLRLWRLRRV SSLFSRLEKDRHFNYFWVRCAKLICVTLFAVHCAACFYYLLADRYPVPTSTWIGNYMA DFHERSLWIRYVTSVYWSITTLTTVGYGDLHAENTREMIFNIFYMLFNLGLTAYLIGN MTNLVVHGTSRTRNYRDTIQAATSFGVRNQLPPRLQDQMISHISLKYRTDSEGLQQQE ILDSLPKAIKSSISQYLFFHLVQNVYLFQGVSNDLIFQLVSEMKAEYFPPREDVILQN EAPTDFYILVSGSVELVEQQNGADQVIQVATSGEVVGEIGVLCYRPQLFTVRTRSLCQ LLRLNRTAFLSIVQSNVGDGTIIMNNLIQFLKEQKENSVMAGVVKEIESMLARGNLDL PITLCFAVTRGDDFLLHQLLKRGMDPNESDNDGHTALHIAASKGNEQCVRLLLEYGAD PNARDSEGKVPLWEALCEKHAAVVQLLVEGGADLSSGDTGLYACIAVEESDTELLNDI IHYGGDVNRARRDGTTALHRAVCDGNVQMAELLLEHGADIDKQDGNGWTPRALAEQQG HDDIQLLFRSRKAATASGHHHVPSSTTTRVAPAAAAASLIGRFNSEPMMKNMIHEDAD LPSRVLPEKLRRKRVTFQNSLFGVISSSQAQRETDHPLSRGGLAATGSPNPSSGSRNA VIRVTISCPEKGNTAGKLVLLPQTLDMLLELGAKKFDFAPTKVLTVEGAEVDEVELIR DGDHLVLVSNEWDAEKMKGKS</aaseq>

Gene Sequence

<dnaseqindica>5191..6113#4768..4843#4473..4670#3861..4045#3742..3775#3484..3582#3143..3388#2725..3042#2582..2639#2037..2402#270..574#aagctcgatcgaagctctcacctctcctctcttctcttctcttcttccgcgacacgtcttcgccgccgccgcagccgccgtcgggcgtcggctctcctccacttaccagaaaaccgaatcaccgagaacttctctctctagtattcaaggcgagagattcccaccccgcgattcccttgcaggccgccagatttgtgggccttgtgggggtgggcgctccattaaacccgagagaggggaggcacgcgcgcccgccgaggggcagcgcaatggcgaggtggggcgccgctcggatggcggcgtgcgggccgtggggccgcaaccggagggtcggcgccggcgacgcgttcgaggccagcgaggtgaggcgggacgggcgcagcaggatgatgcccgcgtgcgggccgtggggggcgggccatggcggcggggacccggcgctcgagagggagctgtcgcgggacggcagccactacagcatctccagcgccatcctcccgtcgctcggcgcgcggagcaaccgccgcatcaagctccgccgcttcatcatctccccctacgaccgccgatacaggttagttcgcaaccttctctgtctctctcttccctatcgccatcacaactctcgccgctgctttgtttcagattttttttttcttgcgcagtctcttgtgtacagtcctgctatactggctgcattacagctttaattttggtgatggtcagcgcagaagtgctttatttttgtattcatagttggcactgaattggttcgttctgcctcttgttaattccaatgagttattatatgttgtcacgaaatagatgggttgctcatgaaattttgttttttctccctctgttttaatggctgctttgctgccgcaattgtcagcaaattgtctttaatgtgttttcgcggaagtgagaagtagaggtttttgtttttactgttcctggtttgacctcgactgaataattgatttgtctatttcttgctttttatagtactcattatctccgttttaatatggctaattctatggcttgtgagtgctttatttagttattcgattttcttttccttgaggaacgacaagaaaagcgtgattttgatgctgacgttcctggatttctagtactcccgttttgcgcttctttacgcaatgcttcgttgtcgaaagagctctctcacggaactcgcatggaaaactttttttctgatttgtttactgcaattatttgccgttggacggacgaggattaataaccttgtattttagttatggacttggtggttttacgaattgttcagattaccttttttgtcggcctcaatgacagtcttctgcaatttgaagttattctgtgctatcattcaattaatatatttttttgtctagtgagagttctgttgtccatttattatttgatagtatcataaaatcgcattacattaatctccatttttcttcggatcactctttcggagataatcttgtatacacagtatacagtaagtagtacggtagtttctgtggtacttctagttgccacttgccaccgagttacggccagtacatatacagtaccgttgaataaacagagattacttgtacaggaataagaaatcacggaactttgaacgaaagtccatctaataccctaaactttaaaaccgaacatctaactccctaaagtttgcaacccctgcagtggtttcgatttttgaacagtggtttcgtgtatttggatgcttataatgactaagatgacatatttgtatttcgtcattccttggccgcaagttatattatattatgatgttatgcatataatgctagtgtatggatttcacaatataaatatcttccattcatggtttagggggtatatggacttcttcctacaggaatatattgttttttcctttgtaagcatggtgtttttgctagtatgaaaagcaaatagaaactttgtaatattgaaatcagaagaatgagtaattctaacatttaattgttaatactatgcagaatctgggagactttcctcatagttcttgtagtctactctgcgtgggtctcaccatttgaatttggcttcattccgaagcctacgggggctctagctacagccgacaatgtggtgaatgcattcttcgcggttgacatcattctgaccttctttgtggcttatttggataaaatgagctatatgcttgaagatgatccaaagaagatcgcatggcgttatagtaccacatggcttgttcttgacgtggcctccaccatcccatcagaatttgctcgcaggatactaccttcaaagcttaggtcatatggatttttcaacatgcttcgtctgtggcgtctccgcagagtcagctctctgttttctaggtatgtttttatcgtgcacatatagaaaattctatgatatacattctgttttggggtccaacatttcaatctgaacctgactgaactcggttaaaacatagtattaattaggctagagccactgccatttttgccttttcaatttgtgtagtaaacttaacacttttcactttttctaggttggagaaggatagacacttcaattacttctgggttcgatgtgcaaagctcatttgtgtaagtgactgtatttatgttattttcctgtgaagttttaacatttttgtggaacatcccattttctcatcctttgatattgcaggtcacactttttgctgtgcactgtgcggcatgcttctactatcttcttgctgataggtaccccgtcccaacttctacgtggattggcaattacatggcagatttccatgaacggagcttatggattcgctacgtaacatcagtctattggtcaatcaccactcttaccaccgtgggctatggggatctacatgcagaaaatacaagggagatgatcttcaacattttctacatgctctttaaccttggtttgaccgcttatttgatcggtaacatgaccaatttggttgtccatggcactagtcgtactcgaaactatgtgagttctttttgttcaacctttggttgatacttgcatctaactgctcttttaaagtttgattctaacaagtagtgtttgttatgttttgtactaaaagagggatacaatccaagcagcaacaagctttggagtaagaaatcagctaccacctcggctgcaagatcagatgatttcacatattagcttaaaatacaggacagattcagaaggtcttcaacaacaagagatccttgattcactgcctaaagctattaaatctagcatttctcaatatctgttcttccatctggttcaaaatgtttacctgtttcaaggagtctcaaatgatctgatttttcaactggtaaggatagagttctttctgtagctgtgtttttgtagttgcgtactgttacagaatatgcttatctggttcttttacttgatttcgtttttgaggtttcggagatgaaagctgaatattttccacctagggaggatgtgattttgcagaatgaagcacccactgacttctacatcttagtttctggtagtgtggtaagaatactctttaataactactttgttatttccaagttgatataatactaagcttcagagagtgcagttgaaaaagtaggagtaattgagctatcagtactgatatcagttttagttatataaatggtcattctgaaattcgagtcacttttgcaggagttagtagagcagcaaaatggtgcagaccaggcaagacttctgttgctttgagacttaattccaagtgaactcgtgcatcaattggtcctaaatatgataacttggaattctgcaggtgatacaagtggctacgtcaggagaggttgttggagaaattggggttctttgctacagacctcagctattcacagttcgaacaagatccttgtgccagttgttgcgtttgaatcgtacagcttttctcagcattgttcaatccaatgttggggatggaactatcataatgaacaaccttattcaggtctaccatttatttgttggtctcttctctgtaacatttatcgcatatgtttgcatttgtagaaagatttttcatattcagagtggtaacctgaccactgaaactagctctgtagtaactcctaaatcgaaccaccctggaacctgcatcatcttgtttaacaatatgtgaagttaaactagtattccctcatatagccactagattatcttgaacacagaaattgtttattcatgtcgactgttctgccattatctaaaaaatatgtcgactgttctgcgactatcagacttgatgttcactgttgtctgttgtgatctggataagggctgtttattttgtttttgcttcattgacatttatcatgctttatgtcgtgcagtattttgagcagtactgagatccactctttttttttctgatgcagttccttaaagagcagaaggagaacagtgtaatggctggtgtcgtaaaggagatagagagtatgctagctcggggaaatctggatttgccaattacactctgttttgcagtaactagaggagatgattttttgttgcatcaacttcttaagcgtggtatggatccaaatgagtcagataatgacgggcataccgcactggtcagtttagtcaactatacgtatctgtgttgtttatttttctatggacttatgctgaccaagaaagttaccactttcaaatgttcatgattaacagcatatagctgcttccaaaggaaacgagcaatgcgtcaggcttctattagaatatggagctgatccaaatgccagaggtatgccgaaaactggaaaattttgacagcatatagtgtacaatttaactgtaagagttaaatggtatgaacagctggatgttatatccaaaccctgcaatatgtcatggcctcacgtcacctgtaaatcttacgaggctaaacttgcttgcaaaattcctgttgaattttctaccaatctaacatctagaacttactgatttacttaatagaatttgctccatgagtttttgcgaagacgcaaaagttttgtgcgtcgatgtaattaactccatgagtgatgagtcttatatacagatgttcaatacaccatctgacatgccacgattttcttttccattttccagactcagaaggaaaagttccactgtgggaagcgctgtgtgagaagcacgccgccgtcgtgcaactattagtcgaaggcggcgcggatctgtcgtcgggtgacacgggcttatacgcttgcatcgccgtggaggagagcgacaccgagctgctcaacgacatcattcactacggaggcgacgtgaacagggctcgccgggacgggaccaccgccctgcaccgcgccgtctgcgacggcaacgtccagatggccgagctcttgctggaacacggagccgacatcgacaagcaggacggcaacggctggaccccgagagccctcgccgagcagcagggccacgacgacatccagctcctgttccggtcgcgcaaggcggcgacggcgagtggccaccatcacgtcccaagctccaccaccaccagggtggcgccggcggcggcggcggcatcactgatcgggaggttcaacagcgagcccatgatgaagaacatgatccacgaagacgccgacctgcccagccgggttctccccgagaagctccggaggaagcgggtcaccttccagaactccctcttcggggtcatctcgtcgtcgcaggcgcagcgggagaccgaccacccgctctcgaggggtggcctcgcggcgacgggctccccgaacccgagcagcggcagccgcaacgccgtcatcagggtgacgatcagctgccccgagaaagggaacaccgccgggaagctcgtgctcctgcctcagacgctggacatgctcctcgagctcggcgccaagaagttcgacttcgcgccaaccaaggttctcaccgtggagggcgccgaggttgacgaggtggagctcatcagagacggcgatcatcttgtgctcgtcagtaatgaatgggatgcagagaagatgaaaggcaagagctagtaaaggagttgtgtgtttttttttctttttcttttttggttgtttactgttgatttccaagaaaggggagatagaatttaccccggagtccaacggttagctaaggaataactggaaatcattggtatagttattccaccatgaagagatggtgaaattgatgggttacgtccggtgttcgtaagtagagaagcgtaagaatttgattttgttatagcgtgttgtgatgttagcctgtttttgttttagttggcaagttgatctgctggcatgtacagttttacgcttttctaatttttgaaggaaaagtcc</dnaseqindica>

External Link(s)

NCBI Gene:Os01g0648000, RefSeq:Os01g0648000