Os01g0663800

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Revision as of 04:52, 25 June 2012 by 127.0.0.1 (talk) (Created page with "{{JaponicaGene| GeneName = Os01g0663800| Description = Protein of unknown function DUF1296 family protein| Version = NM_001050323.1 GI:115439016 GeneID:4327865| Length = 7...")
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Gene Name

Os01g0663800

Description

Protein of unknown function DUF1296 family protein

Version

NM_001050323.1 GI:115439016 GeneID:4327865

Length

7857 bp

Definition

Oryza sativa Japonica Group Os01g0663800, complete gene.

Source

Oryza sativa Japonica Group

 ORGANISM  Oryza sativa Japonica Group
           Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
           Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; BEP
           clade; Ehrhartoideae; Oryzeae; Oryza.
Chromosome

Chromosome 1

Location

Chromosome 1:28858004..28865860

Sequence Coding Region

28858315..28858596,28858752..28859240,28859571..28859720,28860244..28860508,28860583..28860862
,28863185..28863828,28863922..28864000,28864077..28864200,28864427..28864470
,28865458..28865656

Expression

GEO Profiles:Os01g0663800

Genome Context

<gbrowseImage1> name=NC_008394:28858004..28865860 source=RiceChromosome01 preset=GeneLocation </gbrowseImage1>

Gene Structure

<gbrowseImage2> name=NC_008394:28858004..28865860 source=RiceChromosome01 preset=GeneLocation </gbrowseImage2>

Coding Sequence

<cdnaseq>atgagcggcggcggcggaggaggaggaggagggggagggggagggaggggggcggcggcggggccagtgccggggtccgcgaggaagctggtgcaggggctgaaggagatcgtgaaccggcccgacgcggagatctacgcggcgctgcgggactgcggcatggaccccgacgaggcggtcagccgcctcctctcccaagatacgtttcaagaggtaaagagcaagcgcgacaagaaaaaggaggttaataaggaggcgcttgagccaaaatctagaggagcagttaactccaatagtcgagccactagagctggtgcagaccgtagtggacgaagcagttcagttcagtctggatcaagtggtgctgataacatgtcctcaaggtcatcaatattgggacctggcgtgctagcaactaattctacacagaagcaaactgttccaagttctactgtaaacaaggatgttcttcacgatggatcttttggagcaatgcaaccatcgtcgggatttcagaacagttggtgtggggtgccaggtcagatgtcaatggctgatattgtgaaaatgggcagacctcaagtgaggtcttctagcaagcctgtggcttcaacagacaacgcctattctggccaaacctcatctttctcaagtgtggtaaaccagaacccaaacaaatctgcaagcactgccccaccaacaacatttgagcaaagatttcctgttcttcaagatcctattcctcaagttaagaattccagtcatgcttctgctgataaccatgagacacaagagagtgattggtttcaacaggatgggacactaccagggagtcaattaacagtccctgagacatcccgtgacatatctttacctgtggcatctttggaatcatcaacgttggttgctgacgatgcgaactcgtataataattctcatgtaggagagagcagctcagctataccttctgatagacacctggaaattattgatggcaacaaccattttaataatggtttattgcacaactcaagtgcataccagtctcgagggaatcactatgatgataacgatgatgatgatgatgaagctgaagtttctaatgttgatgtggaatctgcttcggcaaacattcagcacctaagcctacagactgaagatctagttgcaagtaaatctaccgaagataatccagcggttataatccctgatcatctacaacttgcaaatgcagactgtgggcatctgagctttggtagttttggatctggtgccttctctgggttgcttccatcaaaggtccacaaaaatggagtggaggaagtgcctgttccagatgaatctccatcagttgatcaagaagatgtcaggaatcaagacaacaatgttgctctaaattcttcaacaaatggggacgttgaagccagaattggcactagcatggagaatactgatgaaccttcagtttcacagcctgatattctgacgcagggtgctgtagatgtgtcaagtctacaatacaatctgccatcagtttcagatcatgtatattcaaacacaacacaaccaagtacgatggagagctcacagggagacatacaagtgcaacatcttcctcagttttcaagtttactgcaagcaaatactctacacaacaacttgctgggatcaaatcttcccaaccttcgggactttgacttttcaccattgctatcaacacaattagctacaaaatataacccaccagtaccgactaccagcttaccagcaatctccatgcaggagacattgaagccagggggattctcgaatgcacaacctacacaaaatcttcccagcgcgagcattccgtctgggcctcctctcccacaacaattatctgtacatccgtaccctcagccaactctgccccttggacctttttccaatctggttggctatccatatttgcctcaaaactactatctaccatcagcagcctttcagcaatctttctcaagtaatggacctttccatcaatctgctgctaccactggggtgcctggtgtcagtatgaaatattcgatgccacaatacaagggcagccttcctgctacaagcccaccacagccttcatcagtggtctccggatttggaggttttggtagctcaaataatattcctggaaatttcggcttaaatcagaatgtcccctctgcacccacaactatggggtttgaagaagctttaagcacacagttcaaagataacagtcaatacattgccttgcagcagaacgacaactctgcaatgtggcttcatggagctgctggttcaagggccgtttcagcggtaccacctggcaacttctatggtttccagggccagaatcagccaggtggcttccgccaggggcagcagccctctcaatacggtggccttgggtacccaagcttctaccagtcacaggctggtttaccgcaggagcacccgcagaaccttactgagggaaccttgaacagctctcagaccactccatctcagccatcgcaccagatctggcaacacatctactga</cdnaseq>

Protein Sequence

<aaseq>MSGGGGGGGGGGGGGRGAAAGPVPGSARKLVQGLKEIVNRPDAE IYAALRDCGMDPDEAVSRLLSQDTFQEVKSKRDKKKEVNKEALEPKSRGAVNSNSRAT RAGADRSGRSSSVQSGSSGADNMSSRSSILGPGVLATNSTQKQTVPSSTVNKDVLHDG SFGAMQPSSGFQNSWCGVPGQMSMADIVKMGRPQVRSSSKPVASTDNAYSGQTSSFSS VVNQNPNKSASTAPPTTFEQRFPVLQDPIPQVKNSSHASADNHETQESDWFQQDGTLP GSQLTVPETSRDISLPVASLESSTLVADDANSYNNSHVGESSSAIPSDRHLEIIDGNN HFNNGLLHNSSAYQSRGNHYDDNDDDDDEAEVSNVDVESASANIQHLSLQTEDLVASK STEDNPAVIIPDHLQLANADCGHLSFGSFGSGAFSGLLPSKVHKNGVEEVPVPDESPS VDQEDVRNQDNNVALNSSTNGDVEARIGTSMENTDEPSVSQPDILTQGAVDVSSLQYN LPSVSDHVYSNTTQPSTMESSQGDIQVQHLPQFSSLLQANTLHNNLLGSNLPNLRDFD FSPLLSTQLATKYNPPVPTTSLPAISMQETLKPGGFSNAQPTQNLPSASIPSGPPLPQ QLSVHPYPQPTLPLGPFSNLVGYPYLPQNYYLPSAAFQQSFSSNGPFHQSAATTGVPG VSMKYSMPQYKGSLPATSPPQPSSVVSGFGGFGSSNNIPGNFGLNQNVPSAPTTMGFE EALSTQFKDNSQYIALQQNDNSAMWLHGAAGSRAVSAVPPGNFYGFQGQNQPGGFRQG QQPSQYGGLGYPSFYQSQAGLPQEHPQNLTEGTLNSSQTTPSQPSHQIWQHIY</aaseq>

Gene Sequence

<dnaseqindica>7265..7546#6621..7109#6141..6290#5353..5617#4999..5278#2033..2676#1861..1939#1661..1784#1391..1434#205..403#gggttttggaattttcggccgccgttgcgtggttgggggaagagcagcagcagcagcagccagcagccggagggcgagccgaagcgcgggggacgcggcggctgctcggcgtcgctcgctcgcgcctcgccgcgtggctggtttgcaggacgggggcgggcggttgccggcggtgacggtgggcgagggggggctccggcgaggatgagcggcggcggcggaggaggaggaggagggggagggggagggaggggggcggcggcggggccagtgccggggtccgcgaggaagctggtgcaggggctgaaggagatcgtgaaccggcccgacgcggagatctacgcggcgctgcgggactgcggcatggaccccgacgaggcggtcagccgcctcctctcccaaggtctctcacctcgccgccgtttttcaagtttttgtagctgctttggttgcgcttggattgtttcgtggcgactggattggattggattggattgaagtgttggggagttctgttccggttttggatgttaggagacgtgctttggtgggtttgctttggggatttattttgatttattaccgtgatggctgtgtacagcaagagagtggcaggaatagctggtgtttttttttttgggggtttggtttgatcttacctagatttgtttgtctgatgtgttattttgcatttggcttagattggggctgtaagactgtaactctccggtttaaacttttactatacttagtctttatttcgaatattctcaattcaaccgatgctaacatttgggggcataatatagattagctttgtgaacattgattttcttctcttggaattaggtcttttcgatctgctcggacagtgtttcgatttattcagtttggatagggcatctgatttttccctgttgggctgcctctttctttacattaacctgtgtctgaacatttatcttctgcacacctttcctacagttcattcaaagtaagagtcaactgatcataggcaatcaagttgtgcatctctcgtagtctttgttgtaggaaactaacatattctataacttctttctgtaatttgagtaaataaccttcattgcttgataatagaaatattctaaaggaagttggaaatgaattgagattgacttgggtatcatctgtaaaacatttgaattacatcgatatatttctacaatttattcagcatgctttggatggtataatcttgggatgctggtcttcatttcaaaaaaaaacatgtccaattgttcattttagtgcatttttttcttgtgaatagcacgctaagcttgatgttctgcatggttccagtagtgccctgataatgatatctgacattttgtcaatctttctctagatacgtttcaagaggtaaagagcaagcgcgacaagaaaaaggaggtcaggactagtttttacttccagtttgacaagtttaatgtagtttcagttggcctggtattgaacttgtgtagctaaccagtgataattggtcgatatatcatttttttaatttgttgactggttacgttttagtgttaaaagtttacatgtccatattatctcttgattatttattttgtgcgcttttagagctcacgtcagtatgtgctgaaatatcacacaggttaataaggaggcgcttgagccaaaatctagaggagcagttaactccaatagtcgagccactagagctggtgcagaccgtagtggacgaagcagttcagttcagtctggatcaagtggtgctggtaagtttaaaacctgtccctatccattagtttctatgtttggctataatccatttctaattttcaatccaaccagataacatgtcctcaaggtcatcaatattgggacctggcgtgctagcaactaattctacacagaagcaaactgttccaaggtaatggaaatttgaacatatagaaatttatgttagaggcattcgtttctatttacagtatggttaactaatttgctttcttttctgttttagttctactgtaaacaaggatgttcttcacgatggatcttttggagcaatgcaaccatcgtcgggatttcagaacagttggtgtggggtgccaggtcagatgtcaatggctgatattgtgaaaatgggcagacctcaagtgaggtcttctagcaagcctgtggcttcaacagacaacgcctattctggccaaacctcatctttctcaagtgtggtaaaccagaacccaaacaaatctgcaagcactgccccaccaacaacatttgagcaaagatttcctgttcttcaagatcctattcctcaagttaagaattccagtcatgcttctgctgataaccatgagacacaagagagtgattggtttcaacaggatgggacactaccagggagtcaattaacagtccctgagacatcccgtgacatatctttacctgtggcatctttggaatcatcaacgttggttgctgacgatgcgaactcgtataataattctcatgtaggagagagcagctcagctataccttctgatagacacctggaaattattgatggcaacaaccattttaataatggtttattgcacaactcaagtgcataccagtctcgagggaatcactatgatgataacgatgatgatgatgatgaaggttagcatacagttgaaattccaaaaacatcttcagaagttcctttttttggttatgtgtctctaaagtcaaataatgtgctcttctattctgaaccactgtccattgaaatgatagaaaattcctcccaactggctaacatgatattttgtttccccccttaaccatgctatgcttttcagaaaccaagtgcaaatttctcttatagacttaggtagtgtttggttgcaaggatgggatgggatgggatgggatgaacccacttttagaggtgtttggttgagaggtgagtgggatgggatggtccctggagaggaatattcctctcagatccgggatgagatggtccgccaaaatcggacggaccaatccatcccacttcgacggacaaaacggcgtcaactcccgcacgcagcctcccgctcggctccgccgcagcgccgccacggccgctcgtccctcctccgcctgctccctcccccagcgccgctccgtcctcctccgcgcgactgccgccgctcatccgcgaccgccaccgctcgtctgcgaccgccgccgcctcgtccgtgtccgacctccgcctccgtgaccggccgccgccttgtccgcgaccgaccgtcgccgcgaggcgcgctcgtccgcgcctcgcctcacctcgcctccgggaccggccgccgctcgtccgcgcctcacctcgcctccgggaccggcctccgctcgctcgcgcctcgcctcgcctccgggaccggccgccgctcgcctgaccgccgcctgtccctcctccgcttgctccctcccccggcgctgctccgtcctccttcgcttgctccctccacctccgcgaccgaccgccgccgcctcgtccgcgtccgacctccgcctccgcgaccgccgccgcctcgtccgtgtccgacctccgcctccgcgaccaattgccgctgctcgtccgcgctcgcctcgtctccgcgaccgccgccgctcgtccgcgcccgccgccaccttcgcgaccgttgccgctcgtccgtgacccgcctccgcctctcctccgctcgcgccgacgagctcctcaacttgcgccgacgagctccttcgtccccaatctcacccgcagcctggaagctagccgctgggagcagacggccctaacgtccgtgaaaaattgttcatcccatcccacctcaatcccttctaccaaacaaaaaactataaccatcccataccacaaaccaaacacacaattggaaccatcccatcccaaaaaactgggatgggttagacccatcccacttgtccccaaaccaaacacacccttatagtatgacactctgacatggattaggtgtactgtctagtgtttatcaaggccattggtcatttttttttaatggctttccctttacataacaaaaacaaaaccattcattgtcagtgttcatcttttaatctttctccctgtaatatgttgaagtggtagactgctagcatcactaaaaaactatgatatgaaaaaaaaagtatgtttgttagattcttttagcaatttctctcatattgacaagggtttttgatctgaatgttggaagactgtaagctaacagctagagttgcaaagaagggtccttgttttcttgtagttttaaatagaatatatgtactctgataatcaacattgtcaactttatacaaaaccacaatcttattatttaagtgtgtatcatctattcatttcatttaccaagtcaacaacaaaaatgtacagctctggcccaacttgtatgaagtattgttttaattctgaactaatgattgtgtaatttgttcaatgccttctaactttcaattggatcaagaaatacgatctttcaaaacttaagttttcagtatattttaatttaagatgcccatgctacactccaacatacaagcatagatacaatttaaacatatacttgtttaagatcttattatatagataaattttctttatgctgtgccaatctgaatcagcaatgaactaatggtgcttattaatggaaacggatggttttggttttcaaatttattcaaggttcaagcatatagccttgttggcttatggtttgctgctgtacatagctgagtgcgctaccaatcccaaatttccaaggaagtgaaatatgcaaaattgcacatgtagcatggttgcttggttccttttttatacattttaattcacgttgtactggtgtactaagttatatatgctgtggccctaaatgctgatactttcttctcttaatcatgcaattattagtgtgaaactgacagtgtaacattttgcagctgaagtttctaatgttgatgtggaatctgcttcggcaaacattcagcacctaagcctacagactgaagatctagttgcaagtaaatctaccgaagataatccagcggttataatccctgatcatctacaacttgcaaatgcagactgtgggcatctgagctttggtagttttggatctggtgccttctctgggttgcttccatcaaaggtccacaaaaatggagtggaggaagtgcctgttccagatgaatctccatcagttgatcaagaagatgtcaggtgaaaatatttccttgctatgttctgtattcatgacaagaaattagccttttctgataaggccggccttgcaggaatcaagacaacaatgttgctctaaattcttcaacaaatggggacgttgaagccagaattggcactagcatggagaatactgatgaaccttcagtttcacagcctgatattctgacgcagggtgctgtagatgtgtcaagtctacaatacaatctgccatcagtttcagatcatgtatattcaaacacaacacaaccaagtacgatggagagctcacagggagacatacaagtgcaacatcttcctcagttttcaagtttactggtatggttctcttataccctgaaattggagcacacagaagatcatcatttcacatagttaacatctcagtttttcctattatttgtcagtttgtcaccatctcaatgttagcatatgtaccaacttggactgatcacttatatgaatctttcacgaatttgtaatttgattaagttacaaaattgttaatttagctttgctattgaggagttaggttagagtacgtataatctgcagacattatgactgtcgttcggaggatgttttattcagttgtctctgtttggctaaagatgttttatactgtgtctgctttgatgatgaaattttacctgtttacctctttagtgttgaatgtccttggtaatgtgacaggttgatagtcaatatatgaatattaactaaaataaaatcaatcctctcaagctcaatatcatttattcttgttatgcatttttttgacaaattggagtttttttaaaaaaaattctcatccttatggcactctaatttattattgtagcaagcaaatactctacacaacaacttgctgggatcaaatcttcccaaccttcgggactttgacttttcaccattgctatcaacacaattagctacaaaatataacccaccagtaccgactaccagcttaccagcaatctccatgcaggaggtaactccaaaatctttttttactttttgttatcgtgcttgttctgaagtttgttgaatttgtagaagttgtagttaacaagtttagaaagaggtcatactctctatttcaaggatggacactttatgttcagcatagttgaatggatatagtagcatcaagtcatcaagaagcttatagctataaacgtttaactatttcttgcattaataaaagaattgtaggtacattttcctggctgttaaatgcctatttgatttggcatagatatgttagcatttcagcttgtattctatttttgagttccactttgcattttatattttccagacattgaagccagggggattctcgaatgcacaacctacacaaaatcttcccagcgcgagcattccgtctgggcctcctctcccacaacaattatctgtacatccgtaccctcagccaactctgccccttggacctttttccaatctggttggctatccatatttgcctcaaaactactatctaccatcagcagcctttcagcaatctttctcaagtaatggacctttccatcaatctgctgctaccactggggtgcctggtgtcagtatgaaatattcgatgccacaatacaagggcagccttcctgctacaagcccaccacagccttcatcagtggtctccggatttggaggttttggtagctcaaataatattcctggaaatttcggcttaaatcagaatgtcccctctgcacccacaactatggggtttgaagaagctttaagcacacagttcaaagataacagtcaatacattgccttgcagcaggtaagtttcacatgctttgcctatgttctggcgccatttgtgtttttgtcctgtctgaggatattatactacaaatacacttgcacttgcactttaactgtccatttggatttccatttcatttttttggtgacttcattcgtgatgcctttcagaacgacaactctgcaatgtggcttcatggagctgctggttcaagggccgtttcagcggtaccacctggcaacttctatggtttccagggccagaatcagccaggtggcttccgccaggggcagcagccctctcaatacggtggccttgggtacccaagcttctaccagtcacaggctggtttaccgcaggagcacccgcagaaccttactgagggaaccttgaacagctctcagaccactccatctcagccatcgcaccagatctggcaacacatctactgagtcctgccctcgtgggagaagcccctctacactgccaggtgatctggtgacctggcatgcgccatgaaatgagcagactagctgagctgccgtcttgcgcgcggagaagagtggacaatgctttctacagtttcgaagtatgttgctgttttttcttcttttcttcttcacttgttgcgtgtgtccggggactaatttcagctgttacgagtttactcgatagtgagttgctatgttgtaacggtaagtcctaatttcatctaacaagagctgcttcttataccctgtgtgattcaacctttatgttcttg</dnaseqindica>

External Link(s)

NCBI Gene:Os01g0663800, RefSeq:Os01g0663800