Os01g0694900

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Revision as of 04:55, 25 June 2012 by 127.0.0.1 (talk) (Created page with "{{JaponicaGene| GeneName = Os01g0694900| Description = Epsin, N-terminal domain containing protein| Version = NM_001050491.1 GI:115439352 GeneID:4323889| Length = 5922 bp|...")
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Gene Name

Os01g0694900

Description

Epsin, N-terminal domain containing protein

Version

NM_001050491.1 GI:115439352 GeneID:4323889

Length

5922 bp

Definition

Oryza sativa Japonica Group Os01g0694900, complete gene.

Source

Oryza sativa Japonica Group

 ORGANISM  Oryza sativa Japonica Group
           Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
           Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; BEP
           clade; Ehrhartoideae; Oryzeae; Oryza.
Chromosome

Chromosome 1

Location

Chromosome 1:30484966..30490887

Sequence Coding Region

30485112..30485201,30485382..30485451,30485650..30485747,30486617..30486755,30486831..30486958
,30487088..30487180,30487295..30487345,30487993..30488058,30488156..30488221
,30488312..30488390,30488486..30488565,30488836..30489015,30489090..30489165
,30489248..30489375,30490157..30490519

Expression

GEO Profiles:Os01g0694900

Genome Context

<gbrowseImage1> name=NC_008394:30484966..30490887 source=RiceChromosome01 preset=GeneLocation </gbrowseImage1>

Gene Structure

<gbrowseImage2> name=NC_008394:30484966..30490887 source=RiceChromosome01 preset=GeneLocation </gbrowseImage2>

Coding Sequence

<cdnaseq>atgtcggcgctgcagagctggcgcaaggcgtacggcgcgctcaaggacaccaccaccgtcagcctcgccaatctcaactccgacttcaaggatctggatgtggcgattgtgaaggccacgaaccacgtcgagtgcccgcccaaggagcgccacctgcgaaagattgcagcggcgacgtccatcggtaggcctcgggcggatgtcgcctactgcatccatgctcttgctcgtcgcctcgccaagacccggaattggattgttgcactgaagacacttgtggtgatccacaggcttctccgggatggtgatcctacattccgtgaagagtttcttactttcacacaaagagtgcggattttgcaattatcaaacttcaaggatgactccacccctgttgcttgggactattcttcatgggttcgtacatacggtttgtttttggaggaaagactggaatgcttcagggtcttaaagtacgatattgaagctgagcgtttgtcgaagcagggtcaagggcctgaaaagggccacagtagaaccagagaattagattctccggacttgctggagcaattaccagcactgcagcagttactctatcgacttattggatgtcggccagaaggagctgcaaatagcaattatttggtgcagtatgctctagctctggttcttaaagaaagcttcaaaatctattgtgcaataaacgatggaattatcaaccttgttgacaagttttttgagatgccaaggcacgaagcactcaaagcccttgaaatttacaggagagctggacagcaggctggaagcctatcggacttctatgaaaactgtcggggattagaacttgcaagaaatttccagtttcctactctgagggagccaccacaatcattcctttcgaccatggaggagtatgtgagagaggctccacgcatggttccaattaaggaacctttggagtttcctgagagactcctcctgacatacaaaccagaagaatcagaagagattcctgagcctgtttctgctgaggaggaaaaaccacaaattgaagaacctgctgttgcagtgccatctactgaagtagttccaccaccacctcctaaacctgaggtcgtagacaccggtgatttattgggattaagcgatccaacccctagtgtatcagcaatagaggaaagcaatgctttggccttggctattattcctacaggtggtgagacgtcaacaagtggcacagctacactgcaagataaaggatttgaccctacaggatgggaacttgctcttgttactaccccgagcaccaacacaaactcaatggccatggacagtaatttgggtggtggatttgacaaactcattctggacagcctatacgacgagggaacctacaggcagcagatgcagcagcagcagctgtatggttcagctgcccccaaccctttcatggcgagtgatcctttcgctatgtcgaatcaagtagctcccccaccatcagttcaaatggctagcatgactcagcagccccagcagatgcctatgatgatgcagccaaatcccttcgggccaccactacagccgcagcatgcaggcattgctcaggcacccaaccccttcctcgatgctgggttcggccctttcccagcatcaaatgggatgcacccgcaagccaacccgtttggaaccgcccaacttttgtag</cdnaseq>

Protein Sequence

<aaseq>MSALQSWRKAYGALKDTTTVSLANLNSDFKDLDVAIVKATNHVE CPPKERHLRKIAAATSIGRPRADVAYCIHALARRLAKTRNWIVALKTLVVIHRLLRDG DPTFREEFLTFTQRVRILQLSNFKDDSTPVAWDYSSWVRTYGLFLEERLECFRVLKYD IEAERLSKQGQGPEKGHSRTRELDSPDLLEQLPALQQLLYRLIGCRPEGAANSNYLVQ YALALVLKESFKIYCAINDGIINLVDKFFEMPRHEALKALEIYRRAGQQAGSLSDFYE NCRGLELARNFQFPTLREPPQSFLSTMEEYVREAPRMVPIKEPLEFPERLLLTYKPEE SEEIPEPVSAEEEKPQIEEPAVAVPSTEVVPPPPPKPEVVDTGDLLGLSDPTPSVSAI EESNALALAIIPTGGETSTSGTATLQDKGFDPTGWELALVTTPSTNTNSMAMDSNLGG GFDKLILDSLYDEGTYRQQMQQQQLYGSAAPNPFMASDPFAMSNQVAPPPSVQMASMT QQPQQMPMMMQPNPFGPPLQPQHAGIAQAPNPFLDAGFGPFPASNGMHPQANPFGTAQ LL</aaseq>

Gene Sequence

<dnaseqindica>147..236#417..486#685..782#1652..1790#1866..1993#2123..2215#2330..2380#3028..3093#3191..3256#3347..3425#3521..3600#3871..4050#4125..4200#4283..4410#5192..5554#gcgtagccggaaatcgaatcaggccgcagggctgagagaaaaaaataatcagaagcaaaggggggagagagagagaaaaaaaaaagtcgaggaggcggcagcaggcggcggcgagcgagcgagcggaggaggaggaggagcagagaatgtcggcgctgcagagctggcgcaaggcgtacggcgcgctcaaggacaccaccaccgtcagcctcgccaatctcaactccgacttcaaggtccgcgtcgagcttttgcaccctcccccaatccagtggcgcaaactggttcagttcatccgatttgccgcaaccgactgggggacgaggagtccaggagggggaggcgtttggatctgtgttgtacgcatccattgggatttattttagtttgcgatgtttttcttttcccctctgtaggatctggatgtggcgattgtgaaggccacgaaccacgtcgagtgcccgcccaaggagcgccacctgcgaagtacgttgattcgtcctcactaccaatctgccaatctcctatatcctcgcttgcgattttctgcttaatttagttcagtgtgtgtggaatcagatttgagaattgagattgttcggtgggatggagggtacttgctgttggggttttccccattctctgttgggtttggtgtttgatgggttggtggttgtgttgcagagattgcagcggcgacgtccatcggtaggcctcgggcggatgtcgcctactgcatccatgctcttgctcgtcgcctcgccaagacccggaattggattgtaagcaccgtgcactcctgttgagatttttcgtgtttatgttttatgtttgtatcttttatgcttaggttgcgttgagcgcttgccatactgtagtcgagtaacaggcgggttgcaaaactgaaatttttgcagtatataaatgtagtcatttatgtaactgccgcagtgtaagaagttaggatactgagcttgagctttttgtggtttagcggtggtacagtggtgctaatgtgggcatccaaccatccaggatagtagaatgtacatttaaattatgttaccgcttatgccctcgatatatctcaaacttgaaatataacttaactcaattgattaacattctctcttctctatatctgagatggtctgcatttttctggtctttcttgttgattttgatagccttttgttcaccatccatggtttctctatttttctggttgccctgaatcatgtttttcgattctgtgatgttctgtctcatattaaatgcttgctttgatctggatcttttttggctgatttggtgaaactcaatgtgctacttcctccgtttcacaatgtaagtcattctagcattttccacattcatattgatgttaatgaatccaaatagatatatatgtctagattcattaacatcaatatgaatgtgggaaatgctagaatgacttacattgtgaaacggagggagtaaatcggcttggtcccaaacaagtttttctgatttatggttttcgtgccaccacttcaacagcagatcagcaatacttcagacactcttcagtgttctgttctatttgcaagtattcgctggtccacatctggagccaattaatgtaacattcatttcatgcactatgtaggttgcactgaagacacttgtggtgatccacaggcttctccgggatggtgatcctacattccgtgaagagtttcttactttcacacaaagagtgcggattttgcaattatcaaacttcaaggatgactccacccctgttggttagtagagcacatcaattttctttagtatcacctcctaaattcccattgtttctaatacaactttttatccagcttgggactattcttcatgggttcgtacatacggtttgtttttggaggaaagactggaatgcttcagggtcttaaagtacgatattgaagctgagcgtttgtcgaagcagggtcaagggcctgaaaaggtttggttattatcaatctcatttggttattgtagtcaaattagctaccatgattataattagagttacaacattttgtcaattattggtttctatcttgctgaattcttcatattgtgactttttcagggccacagtagaaccagagaattagattctccggacttgctggagcaattaccagcactgcagcagttactctatcgacttattggatgtcgggtgattttctcttttgccagtttggactaatgggggaaataaacattctaaaatctaattttccagtctgttttttgtgaagataacctgacagctttctttcttcttatgcagccagaaggagctgcaaatagcaattatttggtgcagtatgctctagctctggtaagctatgttttttcttttacaccagtgtttttcttcttgtggatgcagatgtgtttctttttattacccaatcgctccattgcaaacatcttggttgccttggcacttcataatttgtcaggatgaagagccatatcctgctattactgatataattgagcagttccttctctggactagagtctattcttagaataagggcatcttttgtgcaacattgtatctgtgctatctttttgctcatgtcattgcttgcttgtacagatcttttgcaatattttgtagagcaaactatgatcaggtggtgatgccttagtagagtacattcctagaaattttcctttgttaaaatggttttatatctatatactatcttaggacatttggacagttcttttttcagaatttaaatcttttggggcattctattttgtgttgatatccttagtcatataaggaaataaaagtttctttggtgttttttgtaataacattctggtcataagaaaacaaaaacgatcactgtccttttatgaattaaatttccagttagtgttatgaattaaatttcttgatagttttagtaatttaattttatattagtttaacttggtaagttgagtgaatctccttgctttgcacaggttcttaaagaaagcttcaaaatctattgtgcaataaacgatggaattatcaaccttgttgacaaggtaatttgtttttatattgacagcactatactgtttatttttgttctggcaagttgtgcatactaatattttcttttgttgctcgaaaatgatgcagttttttgagatgccaaggcacgaagcactcaaagcccttgaaatttacaggagagctggacagcaggtgattctaagattctgaaggatggttatctgaaatttgtggtatttcaaagatgatgataatggtagaaataacactgttatgctctaggctggaagcctatcggacttctatgaaaactgtcggggattagaacttgcaagaaatttccagtttcctactctgagggaggcaagtatttttgtgctaactgtgcaacttcttgtattgtaaatcagaatcagataaatcattgtcatcactttctttttctatatttgttccagccaccacaatcattcctttcgaccatggaggagtatgtgagagaggctccacgcatggttccaattaaggaacctttggtcagttcttagttaaaatgacctgctatttcttttaaaaatgccttctacgtttcgatatgcctcctttatattataataatcaagcagcagccctgatgatgatgtttgtgcaatatttatcttcaattgaaatttgaaaccatagcaaaagaagaatcacatgtgttgtgtcaccacagtaaaataatcacatgttgatttgtactaaaataatcattcgatctataaaacggattcttaaactcttaataattgttatttcaccaggagtttcctgagagactcctcctgacatacaaaccagaagaatcagaagagattcctgagcctgtttctgctgaggaggaaaaaccacaaattgaagaacctgctgttgcagtgccatctactgaagtagttccaccaccacctcctaaacctgaggtcgtagacaccggtgatttattggtaagtagaagaaaccatttactgcatgctgcactggttcatttatcacaatttaatgatatgtatgctcctagggattaagcgatccaacccctagtgtatcagcaatagaggaaagcaatgctttggccttggctattattcctacaggtattttgtcatccttcaatccagtgatgcctatcatgaaccttgtgttagataattctgaaaattgtgtgcaatataacaggtggtgagacgtcaacaagtggcacagctacactgcaagataaaggatttgaccctacaggatgggaacttgctcttgttactaccccgagcaccaacacaaactcaatggccatggacagtaatttggtgggttttcttactctttctctgaggatatttatggttagtataatgtcccgctttggatttggaaactgttattctgctgttagtggctcctgccagcttgtcttggttttggatcggacggggttttagccatagctcccaaatcaatctggctggaaaagctttgctggttcattgttggtgaaaacagggagcacaactactcatatatatctgtttatcagaaagcatttaagtgagaaaaaatgataactttgtaattggtgtgaattgcaagtaaatgatttatttcctagaattaatggacctcatggagtcttgggctaatctagaaagtggttgtaacaaacttggttaaggttaagtccatgaaagacctgctgacatgctctgcttctcaaagaaaaagttcattatgctagcaaattctgcaatatctcatcctaatagtgattaactttgagcttggacttttccttttgcgttttcaatttatttgggcaaaagtgtccccaaactcaactttcaggtgaaaatcacgcttttcatagacacagtctttggatttgcttctaaattttaatgactgagctgatagttggcatctttacaatttgttctacttttatacttatgatctcataatggtaatatttaaaattttgaactgttgagtgattcgggttgggttcagtaaccatgtgattttttactccatatttgccattattggtctagctgatcaggccaaaatttattctcttgtttttgtctgcagggtggtggatttgacaaactcattctggacagcctatacgacgagggaacctacaggcagcagatgcagcagcagcagctgtatggttcagctgcccccaaccctttcatggcgagtgatcctttcgctatgtcgaatcaagtagctcccccaccatcagttcaaatggctagcatgactcagcagccccagcagatgcctatgatgatgcagccaaatcccttcgggccaccactacagccgcagcatgcaggcattgctcaggcacccaaccccttcctcgatgctgggttcggccctttcccagcatcaaatgggatgcacccgcaagccaacccgtttggaaccgcccaacttttgtagggtcacagttaacacacgagatgggcacttgggcagtgcaaattcaagtctattgagttgcatattgcatattcagaagtgagatttgcagatgtcgcaatggtatacatactttgtattggcttctcttgggctgtgtggccgcttggcgatcttgattttttgtagttcaagcctgtaaacctcctgtgcagtagtatttgtttttttttttcaccatttgtgacggcggctggtctgggacgattctccttgtaaagaaatttattttctctgattcatagttacatgtcaaaaaaaaaaggtcgtaaaactggtgatagctaccagagtatatatacttttgtaactaaagatattttcagttt</dnaseqindica>

External Link(s)

NCBI Gene:Os01g0694900, RefSeq:Os01g0694900