Os01g0739000

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Revision as of 04:59, 25 June 2012 by 127.0.0.1 (talk) (Created page with "{{JaponicaGene| GeneName = Os01g0739000| Description = Similar to Mitochondrial processing peptidase| Version = NM_001050728.1 GI:115439826 GeneID:4327198| Length = 5543 b...")
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Gene Name

Os01g0739000

Description

Similar to Mitochondrial processing peptidase

Version

NM_001050728.1 GI:115439826 GeneID:4327198

Length

5543 bp

Definition

Oryza sativa Japonica Group Os01g0739000, complete gene.

Source

Oryza sativa Japonica Group

 ORGANISM  Oryza sativa Japonica Group
           Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
           Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; BEP
           clade; Ehrhartoideae; Oryzeae; Oryza.
Chromosome

Chromosome 1

Location

Chromosome 1:32606510..32612052

Sequence Coding Region

32606877..32606929,32607124..32607236,32608023..32608072,32608160..32608230,32608313..32608385
,32609332..32609429,32609524..32609590,32609738..32609818,32609900..32610067
,32610151..32610318,32610401..32610697,32610793..32611014,32611875..32611913

Expression

GEO Profiles:Os01g0739000

Genome Context

<gbrowseImage1> name=NC_008394:32606510..32612052 source=RiceChromosome01 preset=GeneLocation </gbrowseImage1>

Gene Structure

<gbrowseImage2> name=NC_008394:32606510..32612052 source=RiceChromosome01 preset=GeneLocation </gbrowseImage2>

Coding Sequence

<cdnaseq>atgtaccgcatcgccgggagccacttgcgctctctcaagagatacagttatagtaggtttgctagtacaagtgttgtgaagcagtcttcaggtggtttgtttagctggcttcttggggagaagtcaagccaattgcctcctcttgatgtccctctcccgggtattacccttcctccaccactgccagactttgttgaaccgtctaagacaaaagtcaccactctcccgaatggcatcaagattgcttcagaaacgtcagtgagtccagcagcatctgtgggactgtatattgactgtggttcaatatatgaaacacctgcttcatctggagcatcacatctgttggagagaatggcgttcaagagcactacaaacaggagtcatttgcggctagtacgtgaagtagaagccattggagggaatgtctctgcatcagcctctcgtgaacaaatgtgctatacctatgatgcattcaaggcctatgtacctgagatggttgaagtgcttattgatagtgtgaggaacccagccttttttaactgggagattaaagagcagctggagaagatcaaggctgaaatagctgaagtttctgataatcctcaaggtttacttctagaggcactccattctgctggctattctggggcactggcgaagcccctaatggcacctcagtccgctattcataggttggacagtagtatccttgaggaattcattgctgaaaattacacagcacctaggatggtccttgcggcatctggagttgaacatgatgaactagtttcaattgctgagccacttctgtcggatcttcccagtgtgaagcgtccagaagagccaaaatcagtttatgtgggaggagactatcgttgtcaagcggactctgacaagacacatattgctcttgcttttgaagtaccaggtggatggtttgaagagaaaactgccatcattgttactgttcttcagatgctcatgggaggaggtggttctttctctgctggtggtcctgggaagggcatgcattctcgattgtatctccggatattaaacaactaccatcagatcgagtcattctctgcattcaacagtatctacaaccattctggtctttttggaattcatgcaacaactagcccaaattttgcttccaaggctgtggatttggcagcaggagagcttcttgaggttgcaactcctggaaaagttacacaagaacagcttgatcgagctaaacaggcaaccaagtctgcagttttgatgaacttggaatccagagtcgtagcatctgaagacatagggaggcagattttgacgtatggggaaaggaaacccattgagcatttcttgaaagatcttgaagcaatcaccttgaatgacatttcttctactgccaagaagatcatttcatcaccccttacactggcatcatggggtgacgttattcatgtcccgagctatgaatctgttagccagaagtttttctcaaagtaa</cdnaseq>

Protein Sequence

<aaseq>MYRIAGSHLRSLKRYSYSRFASTSVVKQSSGGLFSWLLGEKSSQ LPPLDVPLPGITLPPPLPDFVEPSKTKVTTLPNGIKIASETSVSPAASVGLYIDCGSI YETPASSGASHLLERMAFKSTTNRSHLRLVREVEAIGGNVSASASREQMCYTYDAFKA YVPEMVEVLIDSVRNPAFFNWEIKEQLEKIKAEIAEVSDNPQGLLLEALHSAGYSGAL AKPLMAPQSAIHRLDSSILEEFIAENYTAPRMVLAASGVEHDELVSIAEPLLSDLPSV KRPEEPKSVYVGGDYRCQADSDKTHIALAFEVPGGWFEEKTAIIVTVLQMLMGGGGSF SAGGPGKGMHSRLYLRILNNYHQIESFSAFNSIYNHSGLFGIHATTSPNFASKAVDLA AGELLEVATPGKVTQEQLDRAKQATKSAVLMNLESRVVASEDIGRQILTYGERKPIEH FLKDLEAITLNDISSTAKKIISSPLTLASWGDVIHVPSYESVSQKFFSK</aaseq>

Gene Sequence

<dnaseqindica>5124..5176#4817..4929#3981..4030#3823..3893#3668..3740#2624..2721#2463..2529#2235..2315#1986..2153#1735..1902#1356..1652#1039..1260#140..178#actccacgtctccacccggccgagctcaacctccgcgccgcaccggacggtcgcacccgcgtctcccacctccccggcggcggctcccctcatctccgccggtcgcctcctccaagcctccgcgacgcgcacggcagagatgtaccgcatcgccgggagccacttgcgctctctcaaggtaccgcaccctcccatcccgatccttcccgctgcaaaaccccccatccgattcgcccgacgcggggggcgttccgtgtaggaattgatggtgattgtggctaatccttgtttacttagtcagatgttgaaacgggagatagattgtttgttgtcccacgatgagaagaagaaacctgcatcccgatacatttagcggtcactgattctctctagcacttaccgttttcctgttaaatttattcagataacgcagctgaagtcctgtaaatcctttaaccaacatttttcgtgacggtgcgggatgctatgttgaatgcacggacgccacattttcttttgcctattgcattatattattttgactttttaagctgttttctttgcttgtctgatctgtctagaagtgttgggttgatgagttatcgctaactcaatacacatagtgcttatatcatcttttcagattgataatgttaatacgatattttgagtttttttgggtaaggttcacctgaatgtttaaaacaactattttaatgtaactattatactgcaatttgattccaaagggaaagggtgatgtatgacagtataagttaagctgcaaagtttacttctcggagatttcttttcgcaatatgatcttgctagtttggtttttcagtgaccactgcctccagtattttctgtaatttgtatagaatttttttcatgtgcaagtttttcagtttgagtaccttcttacttctaagtaatttcacctcatgttgtttctgccacattatttgttttcctttatttccataaaaccatatcatgtatcataaagacgcatctcttttgcttatgtggttgcagagatacagttatagtaggtttgctagtacaagtgttgtgaagcagtcttcaggtggtttgtttagctggcttcttggggagaagtcaagccaattgcctcctcttgatgtccctctcccgggtattacccttcctccaccactgccagactttgttgaaccgtctaagacaaaagtcaccactctcccgaatggcatcaagattgcttcagaaacgtcagtggtatgatggtatcactatatgccttcaggtgttttaatagattctcttttttctgcatcagcatgaaaagtaaattttttaggacttatctgcagagtccagcagcatctgtgggactgtatattgactgtggttcaatatatgaaacacctgcttcatctggagcatcacatctgttggagagaatggcgttcaagagcactacaaacaggagtcatttgcggctagtacgtgaagtagaagccattggagggaatgtctctgcatcagcctctcgtgaacaaatgtgctatacctatgatgcattcaaggcctatgtacctgagatggttgaagtgcttattgatagtgtgaggaacccagccttttttaactgggagattaaagagcaggtattctgtcattccgaaattagcatttttgatattctgtatatgttggcattataataatgatgtcttgttccccctacagctggagaagatcaaggctgaaatagctgaagtttctgataatcctcaaggtttacttctagaggcactccattctgctggctattctggggcactggcgaagcccctaatggcacctcagtccgctattcataggttggacagtagtatccttgaggaattcattgctgtaagattcatcaacttgccatttatattgtttttttgttagaaagtgcgtgctttgacatatgcttgcattgatgaattcaggaaaattacacagcacctaggatggtccttgcggcatctggagttgaacatgatgaactagtttcaattgctgagccacttctgtcggatcttcccagtgtgaagcgtccagaagagccaaaatcagtttatgtgggaggagactatcgttgtcaagcggactctgacgtgagcttttgctgctttacgctgtttgttgatgaggatgtgtatatgtacttataatcctggcttccttttcatgaacagaagacacatattgctcttgcttttgaagtaccaggtggatggtttgaagagaaaactgccatcattgttactgttcttcaggtattgttggcaaacatcaaatttaaccattattcagagacaaaactcaactatggtataccttttatgtagtttactgtctagtagactgccttatatgttcaccatttctttatacgcaatatggatggtcttgttattttgcagatgctcatgggaggaggtggttctttctctgctggtggtcctgggaagggcatgcattctcgattgtgtatgttgaattccacattcttgtcaatgtttcaaaaaattaagttgacttcttgtgccaatttcttaacattagcgtgatgctttatttacagatctccggatattaaacaactaccatcagatcgagtcattctctgcattcaacagtatctacaaccattctggtctttttggaattcatgcaacaactgtgagccccttatcagacatggatgatcctgcttttttttttgccaaattcaagaagtaaatgtagtttagtgtctgtctttttataccaaatggaatagcctactctagtagttattataatgtccattatgtgtatatctggtcagtggtgaacccagaacaaaaattgccgggggtccaatacattattacttaattattgactgatttaatagtttaggacataatttggttaggattgaataatctatctggggtcctgtgaccctgggaagctcaacataggcactccattgtatttggtagttgatttgtgtgcacaaccaacctggtctcttttatcctttctgcttctgggatttacacaccatcttacgcatggaataacttgattgcatgaggcctgtgatgaaaccgggcaaagcagccagtgacctttgtaaccaaaatagagaggtcaaaagttccttaagtaggtgaagagggagaattttagtgcctttattacggatataatagaagctagaagcaaccaatacttttgtgggatgtgtggaaagcatccatctggaactgtgagaagtattgtttgcatacttctctgtttagcagggtatatggcaaatgggcacatcgcctgctctactcatttgttttgagatgtttgttatgcattctaccttcactccatatctcctatcactatattgtacaacaatttgtaccatttttttcctctttctagttttccttggaaatgaaactgtgcaaagggagtgagaagattgactaaagccttgtagagacatcaatttgcatccatttctttcttttcattttgttgtgttcattgtgctattaaatgatagaatcacttgtcagtaacactttttgctactcctttcatgatatataattgacacagctttatgtcttgcaatcagagcccaaattttgcttccaaggctgtggatttggcagcaggagagcttcttgaggttgcaactcctggaaaaggtttgcttcttatttgacatattggatatttataaggaccatgcccatatatattttcctcatggctgtattttttgtgtagttacacaagaacagcttgatcgagctaaacaggcaaccaagtctgcagttttgatgaacttggaatccagagtatgcatttctaaccactacttgaatcctttgtgcttatcttttgtttcctgttgtatccttgacactttgttttcttcactgcaggtcgtagcatctgaagacatagggaggcagattttgacgtatggggaaaggtatggttgcaccagcattggtaacatagcaacaaaagtcacctcacatggttcttaaacctttatgtgcactagccatgcattcactatcatttatgagctatgattgtgcaatcatgctgtgtcctgacaattttaagaacgggaactttagcatgtcattaaaatcatagtgaaacctacaaatatatgttgtctattgagatgtcaccttcagtatttacacaagcatagagctttgatccttcaactgtgaatgaactacaacagtttgctttttgtgtagtgttcgttttttgttgtgaacatacatgctaagttcattctagttttaacatgcattactattgacatttctctatatactactatgaagagggagtatgtccgtttacttggaactcggaaaatccagtttgaataaactaatctgtatagccgcctgtgcaccgccttgctgatgtaatgacatcctgccaatgtatagcactccgagcaattgaacaagatgattcctctccttagcccctctcaatgtcgatcttctataattactacaatagtaatgtatgttttatatcccattgaatggcatggggctgggcaatacaaatagaccgccggatgtctatataaccgtagttgcatcaactattgcggaatgaggattgccaacaattttctgttagctagtcagtggtcatcactattatggcaatagaccgtcgttcagctttttacccttagttgtgaatctctaactattcagctttgttgggatcgcaggaaacccattgagcatttcttgaaagatcttgaagcaatcaccttgaatgacatttcttctactgccaagaagatcatttcatcaccccttacactggcatcatggggtgacggtatgttctaacttaatcttcatcaaagtatttccttgtgaggattatgtaatactccctccagttttttttatatgacgttggctagttcaaatttgaactagtcagcgttatacatataaagatggaggcagtactaccttttataaactaataattttggacttgtgattcactagaatgctttcttgcagttattcatgtcccgagctatgaatctgttagccagaagtttttctcaaagtaagcaagcctatcgcatggcttgcccccgacttctaaagttgcagacgtgtaactctactggtccttggccctaaccgctggaattcacaataataaattgtctagacttatttttcttagatattttaattttaagcaaataatagttactcaaacggcgatgatgctgactgtcctttttattcttttcctttattatattgatccataattttgcgtcaggctggaactatttttagttccgcggtggtgttgttgttttttgttttgttttttttttgtcgtgctgagcttagcacagctgagctgttgcgtatgtgtcgtgacttcaagtctatgcatgctgaaatcgtcttgatgatttttcc</dnaseqindica>

External Link(s)

NCBI Gene:Os01g0739000, RefSeq:Os01g0739000