Os01g0770100

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Revision as of 05:02, 25 June 2012 by 127.0.0.1 (talk) (Created page with "{{JaponicaGene| GeneName = Os01g0770100| Description = Protein of unknown function UPF0089 family protein| Version = NM_001050910.1 GI:115440190 GeneID:4325603| Length = 5...")
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Gene Name

Os01g0770100

Description

Protein of unknown function UPF0089 family protein

Version

NM_001050910.1 GI:115440190 GeneID:4325603

Length

5236 bp

Definition

Oryza sativa Japonica Group Os01g0770100, complete gene.

Source

Oryza sativa Japonica Group

 ORGANISM  Oryza sativa Japonica Group
           Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
           Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; BEP
           clade; Ehrhartoideae; Oryzeae; Oryza.
Chromosome

Chromosome 1

Location

Chromosome 1:34240582..34245817

Sequence Coding Region

34240582..34240749,34241277..34241414,34241813..34242028,34242168..34242244,34243732..34244143
,34244836..34245438,34245542..34245817

Expression

GEO Profiles:Os01g0770100

Genome Context

<gbrowseImage1> name=NC_008394:34240582..34245817 source=RiceChromosome01 preset=GeneLocation </gbrowseImage1>

Gene Structure

<gbrowseImage2> name=NC_008394:34240582..34245817 source=RiceChromosome01 preset=GeneLocation </gbrowseImage2>

Coding Sequence

<cdnaseq>atgaacgcggcgggtgcagacaccgacaccgtcctgcggaagcggcaactcaccgtccgcacgacgagcagcaacggcggcaatgggttccgggtcggcggcggcaagggggcggcggcggcgacgccgccggagcccgtcagcccctccgcgcggctcctggaggactttttcatcgtcgtggtgatcggcattgccacgccggtgaacgaccccgtcgcccgcgccggcatcgccgcccagttcgcgcgctacccacgcttccgcagcatccaggtgacggatgaggacggcggcaacccgcggtgggtgcggacgacgctgaacgtggacgaccacatcatctacccggagctggacatggacgcggtggcggccgacccggacaaggcggtggaggactacgtggcgtcgctgtccaccaagcccatggacgagtcgcggccgctgtgggagttccacgtgctggacttcccgacgtcggaggcggcggccaccacggcgatccgcgtgcaccactccctcggggacggcatgtcgctgctcacgctcctcatggcatgcacccgcagcgccgccgacccggcgaggctgcccgccatgccgccgcagccgacgcgcaccggcgcgatctacgcgcggcccaggccgccggcgtcggcgggcgcgctggcgttcgctgcgtggctctggtcgttcgtcgcgctggcgtggcacaccgtggtggacgtcgcgagcttcttcgccacgaccatgttcctcaaggacccgcacacgctgttcaagcgggtgaagcacggggagttccagcggaagcgcatcgtgcaccgggggcttagctttgatgacgtcaagctcgtcaagaacgccatgaactgcggcgcgcggcgtctaccattggaggcggcggcggagggcggtggccagcggccggagggcggggtgagggcggtggccacgagtgcggcggcggcggtggcgggaggttggcggcggcgagaggaagggggccgcgacgacgtcagaggaaccgatggcctggtcggcgcgcgcaaggagaggagcagccggcggccgtcggcgcctcgatgcgcgcaaggaggaggcggcggccaagaggagcggcggcggctctgggcaccaacttccttccccccagacgccgacggcggcggcggcgcagacagcaccggccactcccctcccagatctggacggaagaggggagccggccagcagcggcggcaaaggcggcgctcccctcgccctcgggtaacggcaccggacggaggtgacacggacactgacgaggatatacgtttgagaacgatcctccttgtcaatttgaggccaaccacaagcctgcatgcatacgtagatatgatcaattctggcagagaggatgaagtgaaatggggaaacgcacttggtttcataatcctcccgttcttcataggcatgcacaaggatccactagactacgttcgtaaagccaagaaggttgttgataggaagaagagctcgttagaagtggtattcactcatttagctgcagaagtgatcctcaaactttttgggctcaaggcagcagctgctatcttccatcgtatgatctctcatactaccatatcattctccaacatgatcggcccagttgaacaggtggagttttgtgggcatccagttgtcttcattgcccctagcggctatggacctccagaagccttaaccgtgaattttcaaagttacgttaacaccatgatggtaaatcttgccgtggacgaggcacaatttccagattgtcatgagcttttggatgatttttccgaatccctcaggcagataaaggatgcagctttgagcctaggaaagcatcacaccaaggcttaa</cdnaseq>

Protein Sequence

<aaseq>MNAAGADTDTVLRKRQLTVRTTSSNGGNGFRVGGGKGAAAATPP EPVSPSARLLEDFFIVVVIGIATPVNDPVARAGIAAQFARYPRFRSIQVTDEDGGNPR WVRTTLNVDDHIIYPELDMDAVAADPDKAVEDYVASLSTKPMDESRPLWEFHVLDFPT SEAAATTAIRVHHSLGDGMSLLTLLMACTRSAADPARLPAMPPQPTRTGAIYARPRPP ASAGALAFAAWLWSFVALAWHTVVDVASFFATTMFLKDPHTLFKRVKHGEFQRKRIVH RGLSFDDVKLVKNAMNCGARRLPLEAAAEGGGQRPEGGVRAVATSAAAAVAGGWRRRE EGGRDDVRGTDGLVGARKERSSRRPSAPRCAQGGGGGQEERRRLWAPTSFPPDADGGG GADSTGHSPPRSGRKRGAGQQRRQRRRSPRPRVTAPDGGDTDTDEDIRLRTILLVNLR PTTSLHAYVDMINSGREDEVKWGNALGFIILPFFIGMHKDPLDYVRKAKKVVDRKKSS LEVVFTHLAAEVILKLFGLKAAAAIFHRMISHTTISFSNMIGPVEQVEFCGHPVVFIA PSGYGPPEALTVNFQSYVNTMMVNLAVDEAQFPDCHELLDDFSESLRQIKDAALSLGK HHTKA</aaseq>

Gene Sequence

<dnaseqindica>5069..5236#4404..4541#3790..4005#3574..3650#1675..2086#380..982#1..276#atgaacgcggcgggtgcagacaccgacaccgtcctgcggaagcggcaactcaccgtccgcacgacgagcagcaacggcggcaatgggttccgggtcggcggcggcaagggggcggcggcggcgacgccgccggagcccgtcagcccctccgcgcggctcctggaggactttttcatcgtcgtggtgatcggcattgccacgccggtgaacgaccccgtcgcccgcgccggcatcgccgcccagttcgcgcgctacccacgcttccgcagcatccaggtcggtccgtgcacctgccttgccgcgcgcggcgcgcccatgagctcgccgctggtgcttgagctgacgaacggcacgagtgtgtgtgtgcgcgcgtgtgcaggtgacggatgaggacggcggcaacccgcggtgggtgcggacgacgctgaacgtggacgaccacatcatctacccggagctggacatggacgcggtggcggccgacccggacaaggcggtggaggactacgtggcgtcgctgtccaccaagcccatggacgagtcgcggccgctgtgggagttccacgtgctggacttcccgacgtcggaggcggcggccaccacggcgatccgcgtgcaccactccctcggggacggcatgtcgctgctcacgctcctcatggcatgcacccgcagcgccgccgacccggcgaggctgcccgccatgccgccgcagccgacgcgcaccggcgcgatctacgcgcggcccaggccgccggcgtcggcgggcgcgctggcgttcgctgcgtggctctggtcgttcgtcgcgctggcgtggcacaccgtggtggacgtcgcgagcttcttcgccacgaccatgttcctcaaggacccgcacacgctgttcaagcgggtgaagcacggggagttccagcggaagcgcatcgtgcaccgggggcttagctttgatgacgtcaagctcgtcaagaacgccatgaactgcgtaagcaatgttttctttagttcttagcgagcctgtttgtttgagtatagcggcatataaattgcagaaaactttaaaattaaaatttaagaatttcgtttttggtcactttctagcactactagaaaaatattccatccattccaaaatataaggcataaccacccctaactaaaagaccaagaaataattattatcatcttgtagtttggatcatcctaataaatacaatgcatgaatctaatagaattagggaacatgagagtgcatgattttaaaaaataataatttaatggagaaggggccatagttaattgcctacatgtatgcataccttatattatggaacatttaaaaaaaagtaattgtgctttatattatgaaatggagggagtaatttttagcaacattggtcttttatttttccagacgggtatgaccattggagccaaatagatgcctacaaaaatacaaatcggggtgaaacccactgcccgcctttcacaggcggaccatataagtggtccgcctgcaaaaatatggtccgcctgcgaaaatacatagcgaatacaaatagaggctacataccctagattttttctatgtcctctttccctcacctctcagctctctcccgcacctctccccacccctcacctctcctcctctccctggcgctgacggcggtgtagggcgcgcggcgtctaccattggaggcggcggcggagggcggtggccagcggccggagggcggggtgagggcggtggccacgagtgcggcggcggcggtggcgggaggttggcggcggcgagaggaagggggccgcgacgacgtcagaggaaccgatggcctggtcggcgcgcgcaaggagaggagcagccggcggccgtcggcgcctcgatgcgcgcaaggaggaggcggcggccaagaggagcggcggcggctctgggcaccaacttccttccccccagacgccgacggcggcggcggcgcagacagcaccggccactcccctcccagatctggacggaagaggggagccggccagcagcggcggcaaaggcggcgctcccctcgccctcgggtaacggcaccggacggaggtggagagccatcggccggaggaggatgccggcgccggcgggtagcgccggattttttttgttccctcgctttattttcgcaggcgggccatggacccgcatgcgaaaataacctattttcacaggcgatgggatagccgcggatgactcccccgcctgcgaaaacctttttggccgcctgtgtaaaaactatttttctagtagtgtagccttgatctaagattaggtactccactatattgactaggagtatgatattatctttgaccagtatctttttaaagaaaattacgttgttttgatgaacgtaaatagtatagttatatttagcatctaaaatgctttggtaatacaaatctttttacatatactcttttagaagtcatgtggtcaaagtatcctgctaacaagtgaaaaaagaacaaagggaatgtaaaaatttgagactaatgttttttcgttagtttggtcgagtgtcgctgtcttataaactgtactccgtaggtctttagcagtaaaaatatcttccacataggacctgctctctccgtctctgaaatagatttgtttatatttgtattattagaatatgtatgtcatattgtttattagattttttattttaaaatggataaaatattagtatacaaatatcattaaacacgaattttttttctgtctatcattttcgctccatttctatacttcacctgtttgcaagttgactgtagcaaaggacagagccctcagcaaaagctctggggagatttacgttgtgtttagttccaaaataatagatttacgttgtgtttagttccaaaataatttttcaaatttctaattttttcatcacatcaaaatttttctacacacaaactttcaactttttcatcacatcattctaatttcaattaaactttcaattttagctgcccttatttcattctctttatgtttgcctgcactctcgcagacagtcaatgatgtgctggttgggatcacgtactctgcactgtcacgatattactaacggaagtcaggtgaccaattttggctgatacagcagctgctgattggctgataactttttaagtccctatcacatcggatgtttgaacactaattataaatattaaatgtagactattaataaaacccatccataatcttggactaattcgcgagacgaatctattgagcctaattaatccatgattaacctatatgatgttacagtaaatattctctaattatagattaattaggcttaaaaattttgtctcgcgaattagctttcatttttgtaattagttttgtaagtagtctatatttaatactctaaattagtgtctaaatacagagactaaatttaaatctctggatcaaacaccaccttaaattgcggcctggctgatacagtagtactagttctttactcccatgttgcttgttctcctttgcaccacgttgcttgttctcctttgcaggtgacacggacactgacgaggatatacgtttgagaacgatcctccttgtcaatttgaggccaaccacaagcctgcatgtaataattacacttgggctcaagattggccatttaagctcacaggaccaaacattgttgttgctagtatatttgtagtggtagcaattttggactggtagaatctattatgatttctttcccatttctatggccacaggcatacgtagatatgatcaattctggcagagaggatgaagtgaaatggggaaacgcacttggtttcataatcctcccgttcttcataggcatgcacaaggatccactagactacgttcgtaaagccaagaaggttgttgataggaagaagagctcgttagaagtggtattcactcatttagctgcagaagtgatcctcaaactttttgggctcaaggtaaatttgtcctttatcgtaccatcgcctcatcaggaacttgatccttatattattaacttggcaggcaatgcgataatcactttgtttctattgacaagcactggtttaattcaaaaaacaatcgagaattcaggatactccaagtataactgaatacctgatttagtatttgctgcctaaccatgctaatttagttatcaagaaaatacaattcgtaggtgtacaagattgtgatattcactagaaattgtgtacagtcccagttgttggcagtggctaacttccttgtttcctagaaagagcattacaccgccaaattttgagtcatgcgccaaaaaaacatcccctgtggatttctttgttcctaatatcattgcaacttgtgaatcaaacaggcagcagctgctatcttccatcgtatgatctctcatactaccatatcattctccaacatgatcggcccagttgaacaggtggagttttgtgggcatccagttgtcttcattgcccctagcggctatggacctccagaagtaagttcctgaaatgtatatttgccctagaattaaataattgcattaacttgttagtatgtcagatcctcaaatctatgacagggaagggtttttttgccactaaggaatgatgataccttgtttttgctatgagcatctcacttttgtcactagggctaaaaaacaaatgaatgacgaacgtcagaacatgcgatgatccttggcttagtggcaaaaacagtatgaaaaaaaaaaacccaaaaaattcccatgaaatatagcctggtagctgtctaccatatatcattaagtcatcgcgaaaataaggtaatctgactgaaactaattgctttgatccgttgaaaaaagaagtaattaagcccttgtatgacacttttataacaaggataacaagtgcatagtgatgaataatccttcagcgttgtagatggtgaaagtatttttttcactttgtcatggaatctgggtacagatgtgatgagcaagacctaatttacatctaactgtttggtttgcttgtgtaggccttaaccgtgaattttcaaagttacgttaacaccatgatggtaaatcttgccgtggacgaggcacaatttccagattgtcatgagcttttggatgatttttccgaatccctcaggcagataaaggatgcagctttgagcctaggaaagcatcacaccaaggcttaa</dnaseqindica>

External Link(s)

NCBI Gene:Os01g0770100, RefSeq:Os01g0770100