Os01g0781401

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Revision as of 05:04, 25 June 2012 by 127.0.0.1 (talk) (Created page with "{{JaponicaGene| GeneName = Os01g0781401| Description = Leucine-rich repeat containing protein| Version = NM_001185662.1 GI:297720458 GeneID:9268622| Length = 8944 bp| Def...")
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Gene Name

Os01g0781401

Description

Leucine-rich repeat containing protein

Version

NM_001185662.1 GI:297720458 GeneID:9268622

Length

8944 bp

Definition

Oryza sativa Japonica Group Os01g0781401, complete gene.

Source

Oryza sativa Japonica Group

 ORGANISM  Oryza sativa Japonica Group
           Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
           Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; BEP
           clade; Ehrhartoideae; Oryzeae; Oryza.
Chromosome

Chromosome 1

Location

Chromosome 1:34872028..34880971

Sequence Coding Region

34876345..34880217

Expression

GEO Profiles:Os01g0781401

Genome Context

<gbrowseImage1> name=NC_008394:34872028..34880971 source=RiceChromosome01 preset=GeneLocation </gbrowseImage1>

Gene Structure

<gbrowseImage2> name=NC_008394:34872028..34880971 source=RiceChromosome01 preset=GeneLocation </gbrowseImage2>

Coding Sequence

<cdnaseq>atggcggaggtggtgttggctggcttacgtttggcagcaacaccaatctgtgtgaagctcctctgtaatgcttcgacgtgccttggcgtggacatgacgcgtgagctccatgaactggagaccatcatcataccacagttcgagctggtgattgaagcagctgagaaaggaaaccacagagccaagctggacagatggctccgggagctcaaacaagccttctacaatgctgaggaccttctggacgagcatgagtacaacatccttaagtgcaaagcgaaacacaaggattctctagtgaaagattccacccaggttcatgactcttccatcagcaatattttgaagcagcctatgcgtgctgtgtccagtaggatgtccaatctgcgcccagagaacagaaagatactttgccagttgaatgaactgaagaccatgctggagaaagccaaggagttccgtgagctgattcacttacctgctggtaatagtcttgagggtcccagtgtaccaacaattgttgttcctgtagtgacatcgctattgccgccaagagtatttggtcgcaacatggatcgcgatcgcataatacatcttcttactaagccaatggctactgtttctagctcagtcggctactctggtttggccattgttgcacatggaggagcaggaaaatccaccttagcacaatgtgtttacaatgacaagagggtacaagaacattttgacgtcaggatatgggtctgcatctcacgcaaacttgatgttcatcgccatacacgtgagattatcgagtcagcaacaaatggagagtgccctcgtgtggacaatcttgatactctccagtgcagattgaaggacataatgcaaaaatcagagaaattcctgcttgtgttggatgacgtctggtttgatgaatccgtcaatgagagggaatgggaccagttgcttgatcctcttgtttctcagcaggaggggagcagagttttggtgacttctagacgagatgtacttccagctgctcttcactgtaaggatgttgttcatttggaaaacatggaagatgccgagttcttggctctattcaaataccatgctttctctggaacagaaatcagaaatccacagttgcatgcacggctagaagaggtcgcagagaagattgctaaaaggttaggacaatcgcctttagcagcaaggacagtaggctcccagctgagcaggaataaggatattgccatatggaaaagtgctctaaatattgaaaacttaagtgagcccatgaaagctctgttgtggagttataataaattagattcacgtctgcagagatgttttctgtactgcagcttatttccaaaaggtcacaagtataaaattgatgagatggttgacctttgggtggcagaggggctagttgattcacgcaaccagggggataagagaattgaagatattggcagggattacttcaatgagatggtgtcaggatctttctttcaaccagtttctgaaagatatatgggtacatggtacattatgcatgatctgcttcatgatttggcagagtcactgactaaagaagactgcttcagattagaagatgatggggtgaaagagataccagccactgttcgacatctatctatttgtgttgacagtatgaaattccataagcaaaagatctgcaagctacgttatttacgcactgttatctgcattgaccctctcatggatgacggagatgatatttttaatcagctattgaagaatctgaagaagctacgtgtactacatttgtcgttttacaacagtagcagcttgcctgaatgtattggtgagctgaagcaccttcgatatttgagtatcatcagcacattgatttctgaactgccaagatcattgtgtactcttttccacttggagctacttcatttgaatgacaaggtcaagaatttgccggacagactctgtaatttaagaaagttacgacgtcttgaagcatatgatgacagaaacagaatgtataaattgtatagagcagctctccctcaaattccttacataggcaagctatctttgctgcaagatattgatggattttgcgtgcaaaagcagaagggatatgagttgcgacaactgagggacatgaacaagctcggtggtaatttgcgtgtcgttaatcttgaaaatgtaactggaaaggatgaagcctcagagtcgaagttgcatcagaaaactcatcttagaggtttgcatctctcctggaatgatgtggatgacatggatgtttcacatttggagattctagaaggtttgaggccgccatctcaattggaggaccttacaatcgaaggttacaaatccaccatgtacccaagctggttacttgatggatcctattttgagaatctagagtcttttacgcttgctaattgctgtgtgataggaagcctaccacccaataccgagatctttaggcactgtatgacacttacccttgagaatgtcccgaatatgaagacactaccttttcttccagaaggtctcacaagcctatcaattgaggggtgcccactgcttgtgttcactactaataacgatgaactggaacaccatgattatagggagagcatcacgagggcaaacaacctggaaacacaacttgttttgatatgggaagcgaattccgattcagatattaggagcacattgtcgtccgaacactcatccatgaagaagttgacggaattgatggatactgatatgtcgggaaatcttcaaaccattgaaagcgctttagaaatagagagagatgaagccttggttaaagaagatatcatcaaagtatggctctgttgccacgaggagaggatgagattcatttattcaaggaaggctgggttgccgttggttctaccatctggactatgcgtactctctctttcctcctgtagtattacagatggagctttagctatttgccttggtgggcttacttcacttagaaatttgttcttaacagagattatgactttaactacgcttccaccggaagaggtcttccaacatttgggcaatcttagatacttggtcattcgttcctgctggtgtctcagatcattcgggggcttgcgatctgctacctctctttcagaaataagattattttcctgtccttctttacagttggcacgtggcgcagaatttatgcaaatgtcccttgagaagctatgtgtatacaactgtgtgctttcagctgacttcttctgtggtgactggccacatctggatgatattctcttatctgggtgcagaagctcgtcgtccttgcatgttggtgatcttacctccctcgaatcattctcactatatcattttccagatttatgcacgctggaaggtttgtcttccctgcagcttcaccacgtgcatttgatagatgttccaaagcttactaccgagagcatctcacagtttcgcgtccagcgttcgctctatattagcagttctgttatgctcaaccacatgctctctgctgaaggtttcgttgttccagagtttctctctcttgaaagctgcaaggagccatccgtttcattcgaagaatctgcaaacttcacatccgtcaagtgcctgaggttatgtaattgtgaaatgaggtcaccaccaggaaatatgaagtgcctatccagtctaacgaaactcgatatctatgattgccccaacatatcatctataccagatctgccgtcctccctccagcatatatgtatatggggttgtgagctcttgaaggagagctgcagagcacctgaaggagaaagctggccaaagattgcgcatatccgctggaaggaattcagatga</cdnaseq>

Protein Sequence

<aaseq>MAEVVLAGLRLAATPICVKLLCNASTCLGVDMTRELHELETIII PQFELVIEAAEKGNHRAKLDRWLRELKQAFYNAEDLLDEHEYNILKCKAKHKDSLVKD STQVHDSSISNILKQPMRAVSSRMSNLRPENRKILCQLNELKTMLEKAKEFRELIHLP AGNSLEGPSVPTIVVPVVTSLLPPRVFGRNMDRDRIIHLLTKPMATVSSSVGYSGLAI VAHGGAGKSTLAQCVYNDKRVQEHFDVRIWVCISRKLDVHRHTREIIESATNGECPRV DNLDTLQCRLKDIMQKSEKFLLVLDDVWFDESVNEREWDQLLDPLVSQQEGSRVLVTS RRDVLPAALHCKDVVHLENMEDAEFLALFKYHAFSGTEIRNPQLHARLEEVAEKIAKR LGQSPLAARTVGSQLSRNKDIAIWKSALNIENLSEPMKALLWSYNKLDSRLQRCFLYC SLFPKGHKYKIDEMVDLWVAEGLVDSRNQGDKRIEDIGRDYFNEMVSGSFFQPVSERY MGTWYIMHDLLHDLAESLTKEDCFRLEDDGVKEIPATVRHLSICVDSMKFHKQKICKL RYLRTVICIDPLMDDGDDIFNQLLKNLKKLRVLHLSFYNSSSLPECIGELKHLRYLSI ISTLISELPRSLCTLFHLELLHLNDKVKNLPDRLCNLRKLRRLEAYDDRNRMYKLYRA ALPQIPYIGKLSLLQDIDGFCVQKQKGYELRQLRDMNKLGGNLRVVNLENVTGKDEAS ESKLHQKTHLRGLHLSWNDVDDMDVSHLEILEGLRPPSQLEDLTIEGYKSTMYPSWLL DGSYFENLESFTLANCCVIGSLPPNTEIFRHCMTLTLENVPNMKTLPFLPEGLTSLSI EGCPLLVFTTNNDELEHHDYRESITRANNLETQLVLIWEANSDSDIRSTLSSEHSSMK KLTELMDTDMSGNLQTIESALEIERDEALVKEDIIKVWLCCHEERMRFIYSRKAGLPL VLPSGLCVLSLSSCSITDGALAICLGGLTSLRNLFLTEIMTLTTLPPEEVFQHLGNLR YLVIRSCWCLRSFGGLRSATSLSEIRLFSCPSLQLARGAEFMQMSLEKLCVYNCVLSA DFFCGDWPHLDDILLSGCRSSSSLHVGDLTSLESFSLYHFPDLCTLEGLSSLQLHHVH LIDVPKLTTESISQFRVQRSLYISSSVMLNHMLSAEGFVVPEFLSLESCKEPSVSFEE SANFTSVKCLRLCNCEMRSPPGNMKCLSSLTKLDIYDCPNISSIPDLPSSLQHICIWG CELLKESCRAPEGESWPKIAHIRWKEFR</aaseq>

Gene Sequence

<dnaseqindica>4318..8190#gtgccattgactcgcggtgcgacgagacgagccaccgggatctcccgccgttcggagacctaggggagcaagggggagactagagaaggttgcgctccatgaagtcatggtgcaccttaggtatcttgaaaggttttaccaagcgacctggttattgaagcgtggagaagaggctccagtgcggcaggagaaagcagatgagtagaggtacgatctcttcaggagaaagcagagcccagctgcccaggtggtggggagagattatcaaatttttcggtggtggtttggcacgggactctgccgcttcgctgccttcaaggctcaagctcagggtgactggcggcatctgacaggttcatttcctcttgcttatgtcttttagttgcaaatcaattaccattggttgtgggtttgaattattgggcgaaatgctcatgcgttggtcttgaaatttagctttttatctatctctatgttttacattataagtcgctttaatttttttctaattatttttttaagtttgatcaagttcatataaaaatgcaacaacattttcaactcaaaacaaatatattaatataatatattcaatgctatatgtaatgaaactaatttagtgttatgaatgttactatatttttttataaagttggttaaatctaaaaaggtttaattaaaaaaaatcaaaactacttataatacaagtaaaatagagagaattgcatagaagtggaagtgtgtcggtgtctgtactggttctactcacctagtcacctccctgccactgctattctgctaatagtgttagagaatacgcacgcacagataatggcaaggacgtcatttagaagagcccactagtgcgtgtcatgttgcttatgtgcaaattttatacactttcttgactgaccaaaggttgtatgcggtcattttttttttctctcggtgctagctttaatatacggaaagccgtttagagaagatggcatgacaataatggagcatatatatataaactagctcgtaccctgcggcgttgctgcgggtagatattgtaattgcaagtgtccagagaataacaaataaaattttccatggaacaatcatgatggccaaattgtataatatatggctgaaagttcacattatctaaaacaaatatttttcgctgcggtcggagtgtatattaagaaggagagagtttaagcaaactgtacaagagaacaatcagagccaaagctcacatacagaaccaggacactggttcgccacacacacatggttcaaacttcaaacattactgggagtctgatatacatttctttcttgtcttcctgcaaatttgtgttggcactagcttcatacagacctcaactctactgatccaagaacaacatgtagggctacatcctacatgtatacccaaatacccaatacaaacacaaaatagacgaagctaccctgcaatgcaatcagtaataagatcaatagttgataccgaagccaccagccagcatttcgggtaaacatagagcaacaatgaatataagcaagtctcttaagaattacgttctcattttgataaactggcaagcacgggtgaattttgcatcaacacccaacggaaatttgattagcattccttgaaatatgtcactgttgatgaaggtaaaaaagtaaacacaaagtgaagcccatagagcttcagtttagttcaggcatcaacatagtttaactcatgaacctccaaattaaataaattatttatttcattattatatatcataccttggtacatttgtcagcctcacggcagtagattttgcccatgttgcagtaagttacacacacaaacaccaaatatgctagtttttaaactattcttgtttcactagatttaattgcatttggttttttactatgctatttcggagttgtttaatttgatagtgggggccatagagtataatgaaaaacagcaaggtaatgagaaccagagcatagtccggctagaatattttaggagtccttttaatgaggtccagcttgttaagggtagtatgtctaggggtattttagatatttcccatctctctcttgtacaaatatattttgccctttgggcctaatctaattggaacagttcattctccaatttctccaaattgtaacatggtatcagacccttgttccaaaaaccctagccaccaaatccgatcatcaccggcgcaccggcggcggtgagccgccggcgagccatcatcatcgtcctccttcatccctcaacgtttttgtctccaagcagcaagcctgcagttcgtcgtcgtcaccgtgttcctgttcgccggtcgcagccgccgccagttgcggcgccgcgcccgttcccacttctccacccacgcagccacgccgtcgtggtgttcatccacgctgctcgtcgcggggctcgttcttgccgccgttcgagagccgccgctgtggcctcgtcaatctacatcaaggcatcaagcaacatcagtttttggcccatttcttgtcagttagcatcagcaaaccatcgtcctctctgatctgcagcagcaacaacaacaactcccgttcacctcctagtagatgcagcagctagcccattgttgtctcctaatttcagcagtagaatttccatgttccattgtttgtgttgcaacatgcattctgcagattgtcatcaagcttgtattccaccacatgtgttagtcagtttttgcgcttgctaatcgctgccatccactactcactcatcaatcatcaccatgctttgttattgttagctacttattataatccaattttacttctccaaattatcatgatggcttgtagtagtcactggttaggtcattagctgcttgcttgctactgtcaacatgttcactagcatcctttgtgtcttttgctagtaatgtgcatctctgcttgcagtccatctatcaatattgcctttttgctatatccatcaatccgtgttctttactaatcaaattcctgtgtttcctaccgagtccagcaaaatccattgcatatccttcattttgtcgaagctgtgccagtccatctcttcatggtcatttcatcatcaccagctccccgtcggagctggccttcattgtcacttcatatcttcatcatctccatgtcggagcttgtcatcatcatcatcaatcagtgaaggtccgaagaacagtttgtgaagggccttcatcaatatcaatgtctcatcatcaatcaaaggaccgaagaacagcttgtgaaggtccattgtcatcatcatcaacatctccgaatcaatgaagagccgaagaacgattcgtgaaggcttcaaggtaccgagggccgaagaacagtttgtgaaggctccgaggtccatttcattgaggagggggtcttttcttcttcatcatccaagaattgacacacttcgacgacatcatcaagactttggagataggctaatatttagattgtgttctcatgtttagtttacctttcaaatgcaatgttattacatacacattgcatttgagtgggggtgttaagggtagtatgtctaggggtattttagatatttcccatctctctcttgtacaaatatattttgccctttgggcctaatctaattggaacagttcattccccaatttctccaaattgtgacacagctcatctgaatattagagaaatataaatttgccactaacatttaacaatgtcccacttgtctactccctccgtcaaaaaaaaccaaacctaagacttagatgtgatataatctagtatctgtctagattcgttgtactagattatggcttaaatactagattaagttttttttgggacggagggagtatgtctaaccaaaataacacaattgatttgcatattgtgttttgcctcgcattgtgccgaagcaatcttatctgtggcaattggtagagttcttcctctcacaccttctctgcaatacaaacgcatctggctctggtaaccttgcactcctctcttagtatttctttccttcacgctttcttgtctctgcttaagttctctatcgtttggtaccatcatgcattaattcctttttcctctatttcccactccaaacatttccataaccactcacatacacaaaaataaaaaaccagacagagagaaaaaaacttgttttgggagttctgttgttatcttcctcacagaagaaaaatctctccatcaccatctgttcttatgccctgcttctattcattcacttgttcacagctgcagtagtgctgttccatggcggaggtggtgttggctggcttacgtttggcagcaacaccaatctgtgtgaagctcctctgtaatgcttcgacgtgccttggcgtggacatgacgcgtgagctccatgaactggagaccatcatcataccacagttcgagctggtgattgaagcagctgagaaaggaaaccacagagccaagctggacagatggctccgggagctcaaacaagccttctacaatgctgaggaccttctggacgagcatgagtacaacatccttaagtgcaaagcgaaacacaaggattctctagtgaaagattccacccaggttcatgactcttccatcagcaatattttgaagcagcctatgcgtgctgtgtccagtaggatgtccaatctgcgcccagagaacagaaagatactttgccagttgaatgaactgaagaccatgctggagaaagccaaggagttccgtgagctgattcacttacctgctggtaatagtcttgagggtcccagtgtaccaacaattgttgttcctgtagtgacatcgctattgccgccaagagtatttggtcgcaacatggatcgcgatcgcataatacatcttcttactaagccaatggctactgtttctagctcagtcggctactctggtttggccattgttgcacatggaggagcaggaaaatccaccttagcacaatgtgtttacaatgacaagagggtacaagaacattttgacgtcaggatatgggtctgcatctcacgcaaacttgatgttcatcgccatacacgtgagattatcgagtcagcaacaaatggagagtgccctcgtgtggacaatcttgatactctccagtgcagattgaaggacataatgcaaaaatcagagaaattcctgcttgtgttggatgacgtctggtttgatgaatccgtcaatgagagggaatgggaccagttgcttgatcctcttgtttctcagcaggaggggagcagagttttggtgacttctagacgagatgtacttccagctgctcttcactgtaaggatgttgttcatttggaaaacatggaagatgccgagttcttggctctattcaaataccatgctttctctggaacagaaatcagaaatccacagttgcatgcacggctagaagaggtcgcagagaagattgctaaaaggttaggacaatcgcctttagcagcaaggacagtaggctcccagctgagcaggaataaggatattgccatatggaaaagtgctctaaatattgaaaacttaagtgagcccatgaaagctctgttgtggagttataataaattagattcacgtctgcagagatgttttctgtactgcagcttatttccaaaaggtcacaagtataaaattgatgagatggttgacctttgggtggcagaggggctagttgattcacgcaaccagggggataagagaattgaagatattggcagggattacttcaatgagatggtgtcaggatctttctttcaaccagtttctgaaagatatatgggtacatggtacattatgcatgatctgcttcatgatttggcagagtcactgactaaagaagactgcttcagattagaagatgatggggtgaaagagataccagccactgttcgacatctatctatttgtgttgacagtatgaaattccataagcaaaagatctgcaagctacgttatttacgcactgttatctgcattgaccctctcatggatgacggagatgatatttttaatcagctattgaagaatctgaagaagctacgtgtactacatttgtcgttttacaacagtagcagcttgcctgaatgtattggtgagctgaagcaccttcgatatttgagtatcatcagcacattgatttctgaactgccaagatcattgtgtactcttttccacttggagctacttcatttgaatgacaaggtcaagaatttgccggacagactctgtaatttaagaaagttacgacgtcttgaagcatatgatgacagaaacagaatgtataaattgtatagagcagctctccctcaaattccttacataggcaagctatctttgctgcaagatattgatggattttgcgtgcaaaagcagaagggatatgagttgcgacaactgagggacatgaacaagctcggtggtaatttgcgtgtcgttaatcttgaaaatgtaactggaaaggatgaagcctcagagtcgaagttgcatcagaaaactcatcttagaggtttgcatctctcctggaatgatgtggatgacatggatgtttcacatttggagattctagaaggtttgaggccgccatctcaattggaggaccttacaatcgaaggttacaaatccaccatgtacccaagctggttacttgatggatcctattttgagaatctagagtcttttacgcttgctaattgctgtgtgataggaagcctaccacccaataccgagatctttaggcactgtatgacacttacccttgagaatgtcccgaatatgaagacactaccttttcttccagaaggtctcacaagcctatcaattgaggggtgcccactgcttgtgttcactactaataacgatgaactggaacaccatgattatagggagagcatcacgagggcaaacaacctggaaacacaacttgttttgatatgggaagcgaattccgattcagatattaggagcacattgtcgtccgaacactcatccatgaagaagttgacggaattgatggatactgatatgtcgggaaatcttcaaaccattgaaagcgctttagaaatagagagagatgaagccttggttaaagaagatatcatcaaagtatggctctgttgccacgaggagaggatgagattcatttattcaaggaaggctgggttgccgttggttctaccatctggactatgcgtactctctctttcctcctgtagtattacagatggagctttagctatttgccttggtgggcttacttcacttagaaatttgttcttaacagagattatgactttaactacgcttccaccggaagaggtcttccaacatttgggcaatcttagatacttggtcattcgttcctgctggtgtctcagatcattcgggggcttgcgatctgctacctctctttcagaaataagattattttcctgtccttctttacagttggcacgtggcgcagaatttatgcaaatgtcccttgagaagctatgtgtatacaactgtgtgctttcagctgacttcttctgtggtgactggccacatctggatgatattctcttatctgggtgcagaagctcgtcgtccttgcatgttggtgatcttacctccctcgaatcattctcactatatcattttccagatttatgcacgctggaaggtttgtcttccctgcagcttcaccacgtgcatttgatagatgttccaaagcttactaccgagagcatctcacagtttcgcgtccagcgttcgctctatattagcagttctgttatgctcaaccacatgctctctgctgaaggtttcgttgttccagagtttctctctcttgaaagctgcaaggagccatccgtttcattcgaagaatctgcaaacttcacatccgtcaagtgcctgaggttatgtaattgtgaaatgaggtcaccaccaggaaatatgaagtgcctatccagtctaacgaaactcgatatctatgattgccccaacatatcatctataccagatctgccgtcctccctccagcatatatgtatatggggttgtgagctcttgaaggagagctgcagagcacctgaaggagaaagctggccaaagattgcgcatatccgctggaaggaattcagatgaattgtgcttcagaatcacaactagagagaaacggaaaggtgaaggttacatcaatgcattgtcagaagtattttcttttctgtattatttatttcgttaacccatgatcatgcaaacacattatttacttcaatgtttccttgtttatttattttgaacagacaccccaagattggcacatatacgtttccctgctgccatccaccgactcgccgcctccttttattcggtttctctgccactgacggcccatgatcgtgtcctgttgcttaaatggagtcttgttggtttaagaaaatctctgtgtctcttgaagactcaactatcttgtatttgttaggatacgataggcaaccaaaccataaaaaacaatagatcaatcataaaatatacgagattttaacgtggaaaaccctaccaaaacaggagagaaaaaaccacgggcgtcagccagcaaaatatctttactatatctggggtgaggttacaacgccgcacgtcggcttacaagaggtatatatatggtggaaccctagaaggaatgacgatccggcccaagcctcccggcgacgggcctccgctccactacggcagaagctggcctttattaagtgcaaatgaatttggatcataactcaacagtattttattatgtgatgtgatatactattccagtacttggattttacacttcacacaaatatacagtttgcttcaaatgtttgtctatgtagtttgcataaagtttgtatgg</dnaseqindica>

External Link(s)

NCBI Gene:Os01g0781401, RefSeq:Os01g0781401