Os01g0788800

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Revision as of 05:04, 25 June 2012 by 127.0.0.1 (talk) (Created page with "{{JaponicaGene| GeneName = Os01g0788800| Description = Homeodomain-like containing protein| Version = NM_001051018.1 GI:115440406 GeneID:4325864| Length = 6521 bp| Defini...")
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Gene Name

Os01g0788800

Description

Homeodomain-like containing protein

Version

NM_001051018.1 GI:115440406 GeneID:4325864

Length

6521 bp

Definition

Oryza sativa Japonica Group Os01g0788800, complete gene.

Source

Oryza sativa Japonica Group

 ORGANISM  Oryza sativa Japonica Group
           Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
           Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; BEP
           clade; Ehrhartoideae; Oryzeae; Oryza.
Chromosome

Chromosome 1

Location

Chromosome 1:35227746..35234266

Sequence Coding Region

35227836..35227925,35230026..35230183,35230907..35231024,35231108..35231296,35231596..35231931
,35232056..35232157,35232284..35232478,35232581..35232743,35232902..35233167
,35233258..35233353,35233448..35233864

Expression

GEO Profiles:Os01g0788800

Genome Context

<gbrowseImage1> name=NC_008394:35227746..35234266 source=RiceChromosome01 preset=GeneLocation </gbrowseImage1>

Gene Structure

<gbrowseImage2> name=NC_008394:35227746..35234266 source=RiceChromosome01 preset=GeneLocation </gbrowseImage2>

Coding Sequence

<cdnaseq>atggaaatgaatcaacagcataatgagggcaacgaatctttcgtggccttgatgaacggttttgctggtgacgggacggcaacactaccgaatgatggggagcagagaatgagtattccagcaagagaattatttgcagcaattgaggccgactcaggcttgttgcctgtgaacagtagcaacactaatgaaaaaaggaagaggcgtctacagaggctcactggcaaacagtcggaggtacttgaggggtttttcagcatctgtgggcatcccgatgatggacaaaagaggcatctgagtgagacaacaggtcttggtttagatcaagtgaagttttggtttcagaataaaagaacacaagtaaagactatgtgctggaaggaagagaactataagttgtcggtggagaatgaaattctgagggatgagaacaggagagttaagatagctcactgcactgctgtatgcctcacttgctgtaattcatcagtacagaaccagcttgccgttgagatggaaaggttaatggggcagagtgagtggctgcaacaagagattgcacggtcgaatggaacacccccggctgcaaaccttgcctttcaacttaattcatcagcagactatgtattttcagggcaacatgaccaacaaatgattgctgaactagccaaaaacgcaatgcacgcattgattattttggccgaatcccatgtcgctctatggtttcccgtccctggctgttcttatgaagtattgaacaagatggcttatgaccaagcatatcctggggataacagtgcaaacgccattggattcaagacagaggctactcgtgcagtttctatggtgatgatggactacaaaagcgttgtggatttcctcatggatccttacaactaccgaactttctttcctgaagttatttccggggcagtaaccaacaggatctacacgtggcctaccagtgatggttataatggggttatacaactgatgactgtcgagatgatgttcccatcgcccctggtaccggctaggaaatgcacattcctgcgctattgtaatgtgctgaacgaaggattagtggtcgtcattgatgtgtcattggacgatggcagtatcttctccaaatgccgtaaaatgccatcagggtttctgatccaatccataaggccaaacagctgcaaggtcactgccatagagcacgtccttgcggatgacaccggtgttcatgagctctaccagccttgtatgaatggactcgtcttcggagctcggcgctgggtggcgaccatggcgcggcagtctgcacgcatgagagatgttcatcacaacaagacagctccgcaagtcagcacgaaggggaggaagaatctaatgaagctagcggacgacctgctcgcgagcttcgccggcggcatcgccgccactggcggaggaacgtggaccgtcgtgatcggcgccggcacggagaaggacatcagggtcgcgtacaggaggaccaccgagggcagcagcagctacaacgcgatcctgtccgtcaccgcgtccctgcgtctgccgctgcccatgaggaaaaccttcgatctgctcaggaaccttactcaccgctgcaagtgggacgtcctggtgcacggcagcgtggtgaaggaggaggtcaccatcgccagaggcgtcgggaacgacgacactgtcaccgtcctccactgcaagcgcgccggcagggaggacaggggaaggaccatgatcctgcagaacaacgggtacgacgcgtcgggctcgttcatggtctactcccagatcgacagcgagctgatgaacaccatggtcctgagccccagcgacctgccgcccgggcggggcgggccgtccctctaccccaccggcttctcccttctccctgacgtcgaggctgcccaggacagcagcggcatcgccctcggcgaggttgggggaactctcatgaccatgggcttccagattccggtgaagctcgccagtggggatcgcatgtattcccggtctgcggcatcggcaatcaggctcatgactgacaccattgccctcgtcaagaagacgctgatgaacgagcattctggtatctacggggttagcccgttccacccctag</cdnaseq>

Protein Sequence

<aaseq>MEMNQQHNEGNESFVALMNGFAGDGTATLPNDGEQRMSIPAREL FAAIEADSGLLPVNSSNTNEKRKRRLQRLTGKQSEVLEGFFSICGHPDDGQKRHLSET TGLGLDQVKFWFQNKRTQVKTMCWKEENYKLSVENEILRDENRRVKIAHCTAVCLTCC NSSVQNQLAVEMERLMGQSEWLQQEIARSNGTPPAANLAFQLNSSADYVFSGQHDQQM IAELAKNAMHALIILAESHVALWFPVPGCSYEVLNKMAYDQAYPGDNSANAIGFKTEA TRAVSMVMMDYKSVVDFLMDPYNYRTFFPEVISGAVTNRIYTWPTSDGYNGVIQLMTV EMMFPSPLVPARKCTFLRYCNVLNEGLVVVIDVSLDDGSIFSKCRKMPSGFLIQSIRP NSCKVTAIEHVLADDTGVHELYQPCMNGLVFGARRWVATMARQSARMRDVHHNKTAPQ VSTKGRKNLMKLADDLLASFAGGIAATGGGTWTVVIGAGTEKDIRVAYRRTTEGSSSY NAILSVTASLRLPLPMRKTFDLLRNLTHRCKWDVLVHGSVVKEEVTIARGVGNDDTVT VLHCKRAGREDRGRTMILQNNGYDASGSFMVYSQIDSELMNTMVLSPSDLPPGRGGPS LYPTGFSLLPDVEAAQDSSGIALGEVGGTLMTMGFQIPVKLASGDRMYSRSAASAIRL MTDTIALVKKTLMNEHSGIYGVSPFHP</aaseq>

Gene Sequence

<dnaseqindica>91..180#2281..2438#3162..3279#3363..3551#3851..4186#4311..4412#4539..4733#4836..4998#5157..5422#5513..5608#5703..6119#acggggaaatacaacagaatcgaaatacagaatactgggtgaacgacacactgggagtcacttgcaacctttagggttgaatctccagagatggaaatgaatcaacagcataatgagggcaacgaatctttcgtggccttgatgaacggttttgctggtgacgggacggcaacactaccggtattttctcccaaaatttcatagttcttctcttgagaattttgtgcttgtgttccgaaagaattgggatagaagaatgatttttcacaaaatgtgagcacataagggcatacttctgttctgtaaataagtttttttttggtgagcgtcatgtttccttggtccattatctttgcatataccgagctgaatcttgaagatttgctggcatgcatggttctttgatttctagtgttatatttggtatgctcttgaaatagtttggcaagatttctgtttatatgttctctctctctatatttttttttgaaaggattagatgctcctttctaactctcgtttctcatttttactgtgtttcactaactacggctatgcctgtctattgcaacgggatctgcgggaacacaaacaaacggttttatggggttcagtataagtgttttattttgttggtgaaaagtactggttttgggtagggtggtttttttgggtataatttctttaggtgtggaagtacgatggtggagtaggatttcgttttaacaatagtagagatctcaaaatagcatatgcatgtgtttttatgttttttttacatgttatgattgaaaagaaaaggggacacatgcacaaaattcctttgaaaaccacattgagcggtaccttttcatgatccttgtgggaaaaaaaaaacaaatcctttgttgaaatcttctgtgagggcatttggtgtatgacatgtatgccacatacatgcaatgtttaacatatgtcccctgtgtttactgtggaccagtataatgaaatgctatttttaacacaatccttcgattctttctcatgtaggtaaggcgattcctacttttttgtcatgttcccttctttttcttaatttatacattccaaacaagctctaaaagacaaaagagtagtaaaggtttaaaactaactccagaccataataatccatagacacttgtacagctataatttcttcttttcttttctgtacatcctgttgtcaatcctgcctttcttcttttttacccgtaaagtttcgatacctctggactgtctaaaaaataatccttagacaagttgttttagttgtttaattaccctggcctgcttattttgatgtttaggatcactaaagccatcttttctagaagggttctattaatattaaagtccgaagggatcgcggcaacgattccccagctctgttccgccatgggggatgaatgggagacttggatagctgcaggtcttgttagccccatgtgtcactctgtagcaactcattctgtgagattttagctttctttttatgtctgtaatggtggtgcattgacgcaccgcgctaccttgtacattccctttcttactcttaatatacattggccggctattcgccggcccggcgaaaaaatattaaagtctcgtgaggtatatcataaatgagatcataaacaaggtaagtggttggtaaaaggtaattagtgagatctatagtttctgttcggtttaggattttaagttgactttttgacttgtacatttttttttgaccggaaatactgccggggctttgcccagcagtgtacacttttgttaatcggtggcttttaagtcttaagtttaaatataatatcctaactctaacttacgtaactaaaaaatctacttaaatttagcatttgacttaataatgtgtgcctataaaaaggatatttgtttgtttagatatgggccaaaacaaaggggccttaatagtacgtatacaatttcaatccagatgcctttattaaatatactagtcattggttttccttttttactgtacctaaacttatgtactaagtcagagaggaaggattagaaaaggcagtgtataaccaacgaacaaaggtgaatgttatttttggcatgttatagatgccttgtacattatcagtttctgatggcttttaaattatttgtttttttttttcagttcaatgtgccggagtattatgttttagctctctgactgactataatttgtagaatgaattgtgaatctagcactgagagtatcttgtttcttttaatcagaatgatggggagcagagaatgagtattccagcaagagaattatttgcagcaattgaggccgactcaggcttgttgcctgtgaacagtagcaacactaatgaaaaaaggaagaggcgtctacagaggctcactggcaaacagtcggaggtacttgaggggtatgtttcttgaagcacatatcatcatttattgaaagctagcaattataattgttgttgttgttgttgttgttgttgttgttgttgttgttgttgttgttgttgttgttgttgttgttgttgttgttgttgttgttgttgttgttgttgttgttgttgttgttgttgttgttgttgttgttgttgttgttgttgttattattattattattattattattattattattattattattattattattattattacatcaacaaatatttctagatatatccatctcttatatgttataactagatgatgacccgcgctttgatgcgagatgttagatattggagaaatgatgaaatgatttagattgaaatattacgaaaataatttaagaatgatgatttagcatatgtatgtttagttttagaatgaaataaattatagatataattactgtatgcttatatgttgagctttgtatgcttaatggattgatgttgcatgctgacatgtaggttttaagagtgctaataaatacaatgcttgcatgttgagttttaggtgtttagtgagaattagctttataaaaatgtttagtgggtattagctttataaaaagaaaggattctatcctggttaaatatattgtgtatgttgcagtatggtactcctttctgaggagaatttcatcatgtgggttatcttcatttttcttggatgaacaggtttttcagcatctgtgggcatcccgatgatggacaaaagaggcatctgagtgagacaacaggtcttggtttagatcaagtgaagttttggtttcagaataaaagaacacaagtaaaggtttgttctaaaacattgctatgtactgatgaacaaaaaagtttagtggaatgattaaaaaaaaattccatgacacaatgtagactatgtgctggaaggaagagaactataagttgtcggtggagaatgaaattctgagggatgagaacaggagagttaagatagctcactgcactgctgtatgcctcacttgctgtaattcatcagtacagaaccagcttgccgttgagatggaaaggttaatggggcagagtgagtggctgcaacaagaggtacatcatcttctgatatgttctcctattaaattacaattacttggcatgttgaattttcaattcagtatcttgaatggatttgttcgagctgcaaccatacatgttaaactatgttctcaatatgattcatttatttgcacaatctgatctaccttgtgattaccaatctgcaccctatctaactatagattgtggttacctcctaaatagtttgtctggaatttatttcccaagctccagagtcctatagagactgtatctagaattgaactaatgctgtgttgtttgtttgtcagattgcacggtcgaatggaacacccccggctgcaaaccttgcctttcaacttaattcatcagcagactatgtattttcagggcaacatgaccaacaaatgattgctgaactagccaaaaacgcaatgcacgcattgattattttggccgaatcccatgtcgctctatggtttcccgtccctggctgttcttatgaagtattgaacaagatggcttatgaccaagcatatcctggggataacagtgcaaacgccattggattcaagacagaggctactcgtgcagtttctatggtgatgatggactacaaaagcgttgtggatttcctcatggatcctgtaagtggtatatagattttaatagtgccttgctaaaaagatgtgaatatgaatgcccgtatcaattctttttagataatatttcaagttgcaatttgatctcaatgttaaatttttactgcagtacaactaccgaactttctttcctgaagttatttccggggcagtaaccaacaggatctacacgtggcctaccagtgatggttataatggggttatacaactggtatgtatagactagtagtatatcttatggggaaatagagtgcaggcaaaatcagcagtacttaccttttggtgatatatattcatgtgctttttagttggtactaacagttcttgagaacaacagatgactgtcgagatgatgttcccatcgcccctggtaccggctaggaaatgcacattcctgcgctattgtaatgtgctgaacgaaggattagtggtcgtcattgatgtgtcattggacgatggcagtatcttctccaaatgccgtaaaatgccatcagggtttctgatccaatccataaggccaaacagctgcaaggtattgtgacacacaaacgttataaaaaaaatggccaagaattgttttttaccaatatattcaatcccgtatctgatctgtcgtatgatatcttcttggcaggtcactgccatagagcacgtccttgcggatgacaccggtgttcatgagctctaccagccttgtatgaatggactcgtcttcggagctcggcgctgggtggcgaccatggcgcggcagtctgcacgcatgagagatgttcatcacaacaagacagctccgcaaggtaatggcaacctgtaaaatcctttcggtgcctgaaactctgaaaattgccgcattcctgtcagaacagggagccgtttccagctttgcatgaacaacgtttccatcctttcgttgttttgttgtgtgcgtgtgtgtgtgtgtgtgtgtgtgtctcagtcagcacgaaggggaggaagaatctaatgaagctagcggacgacctgctcgcgagcttcgccggcggcatcgccgccactggcggaggaacgtggaccgtcgtgatcggcgccggcacggagaaggacatcagggtcgcgtacaggaggaccaccgagggcagcagcagctacaacgcgatcctgtccgtcaccgcgtccctgcgtctgccgctgcccatgaggaaaaccttcgatctgctcaggaaccttactcaccgctgcaaggtacgtacacgaaacaaaaaaagaagagaagaaaaattagtttctttcctaattctcgcgaactcaccgcgacgccggccggccgtgcagtgggacgtcctggtgcacggcagcgtggtgaaggaggaggtcaccatcgccagaggcgtcgggaacgacgacactgtcaccgtcctccactgcaaggtaccgcaccacaaaccttaattttgctacctccaccggccatctctcgtgccgtactccggctgactccgacaatatgtgcggtgttgatcagcgcgccggcagggaggacaggggaaggaccatgatcctgcagaacaacgggtacgacgcgtcgggctcgttcatggtctactcccagatcgacagcgagctgatgaacaccatggtcctgagccccagcgacctgccgcccgggcggggcgggccgtccctctaccccaccggcttctcccttctccctgacgtcgaggctgcccaggacagcagcggcatcgccctcggcgaggttgggggaactctcatgaccatgggcttccagattccggtgaagctcgccagtggggatcgcatgtattcccggtctgcggcatcggcaatcaggctcatgactgacaccattgccctcgtcaagaagacgctgatgaacgagcattctggtatctacggggttagcccgttccacccctagattcagaaaaacaccagaggtaatcatttcattgacaagtttcctgttaaactaggctaatgaagttccatctgattcctgatattatgctagtgttgctgatgagctctcgtctgttttgtacagggagaaaagggaggtccgtgtgcagataaaaatcaagaacatgcgaaggggattcatcggctccgatcaccctgcatctcccagaatttgctgaattaattagaactttaaggttgtgttaacaacctgtaataatgtttttaaggccaaacttatatcgtgtctttgctgtaataatgtagtatgcgcctgatggatgtcgactgccgtgtaccgatgcagtttgcttcgcagagacgcggatacatttgctatcgtatggatgctcctttagaa</dnaseqindica>

External Link(s)

NCBI Gene:Os01g0788800, RefSeq:Os01g0788800