Os01g0807900

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Revision as of 05:06, 25 June 2012 by 127.0.0.1 (talk) (Created page with "{{JaponicaGene| GeneName = Os01g0807900| Description = Similar to Dihydropyrimidinase (Dihydropyrimidine amidohydrolase) (EC 3.5.2.2)| Version = NM_001051108.2 GI:297597814...")
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Gene Name

Os01g0807900

Description

Similar to Dihydropyrimidinase (Dihydropyrimidine amidohydrolase) (EC 3.5.2.2)

Version

NM_001051108.2 GI:297597814 GeneID:4327558

Length

10311 bp

Definition

Oryza sativa Japonica Group Os01g0807900, complete gene.

Source

Oryza sativa Japonica Group

 ORGANISM  Oryza sativa Japonica Group
           Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
           Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; BEP
           clade; Ehrhartoideae; Oryzeae; Oryza.
Chromosome

Chromosome 1

Location

Chromosome 1:36051498..36061808

Sequence Coding Region

36057815..36057904,36057998..36058171,36058856..36058910,36058998..36059267,36059469..36059680
,36059864..36059984,36060262..36060349,36060422..36060500,36060680..36060767
,36060900..36060940,36061065..36061117,36061211..36061367,36061450..36061641

Expression

GEO Profiles:Os01g0807900

Genome Context

<gbrowseImage1> name=NC_008394:36051498..36061808 source=RiceChromosome01 preset=GeneLocation </gbrowseImage1>

Gene Structure

<gbrowseImage2> name=NC_008394:36051498..36061808 source=RiceChromosome01 preset=GeneLocation </gbrowseImage2>

Coding Sequence

<cdnaseq>atggcgatgccctgccgcctccacggcgacatcctgctgctcctgctcggcgccgtcgccgtcgcggtggctcacccggcggcgaacgagttctgcgcggccgtcggtggaggaagcggtggctgcggcgtcggcggcggcggcggaggggacgggaggaggatcctgatcaggggcgggacggtggtgaacgcgcaccgggtggaggaggccgacgtgtacgtggaggacggcgtgatcgtcgccgtgcggcccaacatcccggttggtgatgatcatgtaaaagtgattgatgcaactggaaaatatgtcatgccaggtggaattgaccctcacactcacctggagatggaattcatgggaactgtaaccattgatgatttctttagtggtcatgctgcagcattggctggtgggacaacaatgcacattgacttcgtcattccagtgaatggcaatttaactgcaggtttggaatcctacaaacagaaggcagaaaaatctgccatggattatggatttcatatggccattacaaagtggaatgatgatgtttcgagggaaatggaaacgatggttaaggaacatgggatcaattctttcaagttcttcatggcgtataaaggttcattgatggtcacggatgacctactcctgcaaggcttacagaaatgcaaatctcttggtgccttggctatggttcatgcagagaatggggatgctgttgctgagggacagcaacgaatgatcgatcttgggataactggcccagaaggacatgctctctcaagacctccagttttggaaggggaagcaactgctcgggcaattcgattagccaagtttgtcaatacaccattgtatgttgttcatgtgatgagcattgatgcaatggatgagattgccaaggctaaaagagaagggcagagagtcattggtgaacctgtggtttctgggctagtacttgatgattcttggctttgggatccggacttcatgatagcttcaaagtatgtaatgagtcctcctatccgagaagcaggacataataaagcacttcaagttgctctttcatcaggaattttacagcttgtaggaactgatcattgcaccttcaactccacacagaaagctttcggctctgatgatttcagaaagattcctaatggtgttaatggtatcgaggaaaggatgcatattatttgggacagtatggtggagactggccgaatttctgtcagtgattatgtgagagtgacaagcacagaatgtgccaagattttcaacatataccctcggaaaggagcaattctggaaggatctgatgcagatattatcatcctgaatcccgagaggagctttgtcatgggtgcccacacacaccattcaaggtccaacacaaatgtgtacgagggcaggaaaggaaagggaatggtagaagtcacgatctcaagagggcgagttgtgtgggaggatggcattctgaacgttgttcccggttcaggaagatacgtcagaacaccgccttacagctacctgtttgatggcattgaaaagtcagacgctgcctacagagcctcccttcgtgcccctgtgaaacgtggcaaggctgctgcttaa</cdnaseq>

Protein Sequence

<aaseq>MAMPCRLHGDILLLLLGAVAVAVAHPAANEFCAAVGGGSGGCGV GGGGGGDGRRILIRGGTVVNAHRVEEADVYVEDGVIVAVRPNIPVGDDHVKVIDATGK YVMPGGIDPHTHLEMEFMGTVTIDDFFSGHAAALAGGTTMHIDFVIPVNGNLTAGLES YKQKAEKSAMDYGFHMAITKWNDDVSREMETMVKEHGINSFKFFMAYKGSLMVTDDLL LQGLQKCKSLGALAMVHAENGDAVAEGQQRMIDLGITGPEGHALSRPPVLEGEATARA IRLAKFVNTPLYVVHVMSIDAMDEIAKAKREGQRVIGEPVVSGLVLDDSWLWDPDFMI ASKYVMSPPIREAGHNKALQVALSSGILQLVGTDHCTFNSTQKAFGSDDFRKIPNGVN GIEERMHIIWDSMVETGRISVSDYVRVTSTECAKIFNIYPRKGAILEGSDADIIILNP ERSFVMGAHTHHSRSNTNVYEGRKGKGMVEVTISRGRVVWEDGILNVVPGSGRYVRTP PYSYLFDGIEKSDAAYRASLRAPVKRGKAAA</aaseq>

Gene Sequence

<dnaseqindica>6318..6407#6501..6674#7359..7413#7501..7770#7972..8183#8367..8487#8765..8852#8925..9003#9183..9270#9403..9443#9568..9620#9714..9870#9953..10144#agtctcagagtcagaggcaagagaaccgcaaaacacaggacgcgctccgctcctctgccgccgccgccggagctctcacctccaggggctctcgccacgagccgccggagctcaacccgtgccgccgcacgggcgccggcggacggctggaggccgctgctgcatccttctaccgcccgcattgcttttgctccctcctcctcggctcctccctgtccaaacaccggcaggtgagtaccctaacctaaatccctgcaccccgtccaaaagtgtagtgtgatatctcttcgtgttcatgtgagtgggaaattggatgatgctattggagtgaattaatcacaatgtatagtactagcctactagggacgatgccattatggttaaattggggatatattttgataggtttatatggagaacaatggatgcacccatgcttataaagggattgagatgattaaggagatgggactacatgatactaactacagtcgtagttcttagggtaaacacactttattagacttgaaaaatgactcccaattggccaacctcattttagcaaagaaaatgtagagcataaagattattgcatcaaatcgttgcctcaattaaggccatatatgttgttccaagctgataagttaaaggaagggataatcgcagcatcaagatcacttacagaaaaggtattaccttctatatctgctcaggcacaatgacatccccgtcaatctctatatctctgatgtgagctatctttgcatgatactccccaccttcttggcattgttgcttaatttgtggacatcccttgatgtaaagctcgttgagccccatcggcaggccttcttttggcaagctttcaaccccgggacagttactaatccgtagtgtttcaagtgaggagatgttgtgcagaccaggaggtaagcattgaagatcatcacagcatgatatctccaaaaattgaagtgtgtgaggtaaaccctctgctggaaagttattgatatcaggacaatcagcaatttcaaaatgccttagatgaggaaggtaacttaggccatttagaagcacacttgctaatggagtgcatgagtttagacggatatcttcgattgaagtgggaagcaagcctccctccagtgctgtccaaggcaccagacaagggcactcgtagatgtgcaggcttctgagtgatattaatggacggaaacactcctctggcagtgaaacaagcccttcacaatgggctattgttagacttttgagagctgttggtctgtatgcaagtaaacctacacgtagagatgttagatttgggcaatcattgatgtatagagatgttggtgaagatggacaagaattattctgaagctctggaagtgactcaagccctgattcagaaatccacagtgttcttagtgttgatggaataggaggtaacttcttcaactgtgggcacttgatgagaccaagttcagttaattgtggaaacaattgatcagcaacatcaaaaatccactcgctcagatttggcatatcttccaatagaagatcttctaaagctggaaaaccttttggttgtccaaatcctgtgaactcactgctgagttgtgtcacctcagttactccagctatgacaagatattttaaaaagggaagctggcctaaagctggaagccttgtgcttctacagttgcatatatgtatggtttgcagcttgggaagaaatgaactagccagccagcttgggaacctcaccccagggaaccctttaatcactaattccttgagatcgagatgtggttgaagaccttctagaacttcttgctgctctgaaggattgctttcacagtcctcatcccatataaggtgtagagttcgaagatgctctttgtttctcaactttgcacaaactgcatcttgcccattaggtacattattgaggccacgaatagaaagttgtccttgcagctcatccatgttatttagttctgtgacgttgtgccctgagcgcttctgaactacaaattcttctagttcctgtaggcataccaaacttccaattccatgtatcctggacagtagtcttgtacttgcttctaagtggcgcagattaatgagcctagtgatgccttgtggcacttcccttagaaaattgcagtcactcagctttagtatttgcaagttatagagcttaacaagagatgctggtaatgtttcgatttcagtgctactgagatctaggaagcgcagttgtttcagattccctatagattctggtaactctttaaggccttgtccatgcatatcaagcactctaagatattcaagtttcataaatagaccatgaggcaattgagacatccttgacttgtatccatggataatagtcagtgtccttagcttcctaaacccatacagtggattgaagtgcatgcacttggcatccttgcatggaaatgaaagatgacgggtcttaatggcattgtcatgtcttctcccataatctaagtggtcgcagtcttccatggagatagattttgcaaggtcgtgcattgcatcatgcatcacatagttattctcatatggctggaagaaagacctgcttaataactcattaaagtatgcatttccagtatcttccattctcttctttctagactgtctgatgaaaccaagtgctagccagatcttaaccagtttctctctcctgaacatataatccttaggatatacagaacagaatgcaaagcactgcttaagatgtggtggtaaatggttgtaacttagacgtagggctggcaggatgttattcttatctgccggtaactcccatatgtcattttgcagtatgtccttccactcctcttcatctgttttgcaaaacaggaggctccctaatgcctttgatgcaagaggcaatcccttcagcttcttcacaatttccattcctatcgcctccaactccggatgtgcgctgcagtcaccatccctaaatgcatggctcttgaatacagaccagctgtcatcatctgatagtttctgtaacttgtagggctctattcctcccatgattctgccaacattctcatttcgtgatgtcaccactatcttgcttccaaaccctcctgaaattaaggctgctctatagctgtgccatttatcaaggtcttcattccagacatcatccaagacaagcaagtacctcttgccccgcaatactctggagagtgtttcctgtagcatattcatgttagtactagcaacagattggtcatagtcagaagcctcaagagtttcttgtgttagctttctctcatcaaaactttcagacacatagatccagatcctcaagtcaaagtgttctcttactctgtcatcatggtacaccatctgcataagagtagttttaccaagcccacccatgccaacaactggaatgacacataagttgcaggaattatgtccattatcagagagcaccagcctcaccatttcttctctgtccctctccctaccaaatacagccgaactatctacaagagaacttgattgcggacgctctgaggtatcataccgtctcatttcacatatcatctggagcccaatggtgtcgcgttcttgcgcaatcttatctaatctctccaatatgatgttaatcttatgctttatcctatgctggtacagattcctactcaagaaggaggaagaaagaaaacttgcctttgtggggaatatcacctgcctctgcttcatgcgcatacttttggctgaatagctgtccagcagatcatcaaggtcgtacgcgatatccttgagcttcgctagccatcccctcacagatgcatctgtcaactgcttctcctcagcgtcgtcaaggaaagcctgtaactgagacagtgtggaagagaggctctctagcttgccatgtatgcctctccaagatatgaaatgatcaagggttgcttctgacaatttctggaagagggtttgcatgaaggctcctaaaattgcttctgctgccatggcagttttttttttttgtctgtgtgttcccctcttttgcccttttagcctgtaagaagtagaagtgaagaaagactgaattaacaagggtttgggacgttgacctgtaaggtggtgtttttccacgcaatttcagacacgatatgccccgtaaacaatctctttccatagatcattaatcacttaaaagcttatgtgcgcgttggaactttttaccccatacaactgtgaagtgatgttgatattgtattgttcctttctttccactcagttggttgatacttgatacagcgtacaagtccggttcacatggtctttcctgacattatcttataaaaataatctggtctttgcaagcgtgttgaattttgatgactgtacacttcttgtgaagtttgtgatcatgttaaaaagaaggaagtttatacttttgatcgtgcagtccacagcagagttcaaatttcggtctttttttgtgaatttggtaacattttgttcaaatttgaccaacatttgtttaaaattttggaaattttagaccgaaatttctaaagtcggaaattttgatatatcggtggcctctgatagaatcggccaaaccgaaaaattaaaccctgatccataatcacttggtgtatgggccgggggatttgcaattatgacactgcaaacattaacttttgctataatgacactggacccacatttcatagacacaaatggacctatttgtcatccactcggagtgtcaaaacagcggagcccccatgtttgcagtcccaatattgcaattttctcgtctggcccgtgggaatcaaaacaaaaaagagttagttcggagtacaagacaattctttaaaatctggaggagagttttcttgactcgggagtcggggacactcttgtctagacagtcggcttctagtggtggttgatgtagctaacttttggtcatatgttcatacctattagacttacagtgttaatacctgttcattaaaatttctttggaaataaaaatgtgtgatactattgaggaacttatatcacttcaattaagaacaaataaggatccaaactttggtatggccttccgccagctgagcttcgcttagcttaactccttttctttcaagatggcactgaagaaaaagtgacaaacatgtggttaatcctataattcgagaaaggggaaactacaccatgctgttcagcaaaatgcatcacctgaagctttagggttagtgagacagacataagcccaattcatacagatataatgggggtcaagtacaaaccttgcctttgcattatctaatgcagaaggtatagatcctccgtgcaccttaagtagagatgtgttttcttcaaatagatcagaatatgttctaatgaattggttgccacaatttacataaattcattatgaatacaatgactttggaggctccaaaggttatacagttaataactagtaaatattttgctcatcagtgtttcctcagttttactgggatctcccctgacgtgacaacattagggaatatcattgccatgttctggatcttctcaacactaggatacgaagaaggtcgtcaaggcaacttcgacgaacatagcaggtttagtaaccatgtcagaaaagcattttgcaactacccattattactgtcctgttactgctatactagcttaacgctgctgattctttggctgctggaacagttcaatgtgcaggagcaccatgatctgtttgaaccacggtatattctctctgattccgtcaaagtaaatacgtaggcactgcaattctgatgtgctcatggattcactcacttagcagatctttgcagcaagtgcagccattgtcaaagacaggcagcacgtagttgaagcttgcaggagttttgctctatccaagatgtcacaaacacagcctgagttcttacggcgctggatgacagtgacgttctgaagatggtttgcagatcggatttatagcaagaagattatcggatggatttggtgacgagggcctgcgcgagattccaactaacccaggattttctctgttttttttttctttcgtttttgtttaataataatccgtttaattgatgtgttagtcctccccgcatacgtcgcacgcgctgctgattggataagagaatcgaacgaacgtgacaactggtttagtggttttttttttctctgcttcttctcttctctccgctcttctgcgtctctgaggatccgaggaagtggcggtcggaggaggaggagccatggcgatgccctgccgcctccacggcgacatcctgctgctcctgctcggcgccgtcgccgtcgcggtggctcacccggcggcgaacgaggtggggtgcgctcggatttctctgtcgctcgatcgccagcgtgtttggttggtttggttggtctgatgtgattttgggttttggactctgaagttctgcgcggccgtcggtggaggaagcggtggctgcggcgtcggcggcggcggcggaggggacgggaggaggatcctgatcaggggcgggacggtggtgaacgcgcaccgggtggaggaggccgacgtgtacgtggaggacggcgtgatcgtcgccgtgcggcccaacatcccggtgagtgtggctgctgatctctgagactttgctctggggttggggagattcggattggctcctcttgggattcggactgcgcattgacttgccgtcttcaagactgcaacaaccaatgagccatcagtagaggctagactgtagccatgttcgttgatgccaaattgccaagtgactctggaactggcttatactccctccatctcaaaatataagaacctataaccagataagatatttctatttcctagtagttgaccagattcgtaatactcagaaatatctatatgttcatattcgtgttactaggaaatctctcatccgatttaggttcttatattttgggacggatgtagcatcttaagatgaacagttttgtagtaataggtcactgcaatttactatggtaaatgtaaaagtaactgctatggtaaatgtaaaacaaaggtcatggagatatgaagtgacagtataaacagtaaactggaaaaaatgaacacagttatctttccttctttcttgagatgagtgagaagccatctgaaactagcaattttttttatggaactgtgaattggggtccataaatagagggaagttgtgttggagcagctttttatcaaaccatgtcctctcttaatgtttcaaccttgctattgaaaagtctcatgttttcatatctaggttggtgatgatcatgtaaaagtgattgatgcaactggaaaatatgtcatgccaggtaaattcttacggttttgataaacattttggaattagttattacttgctcttcgggtttatcattcttctggcaaatgtcacacaggtggaattgaccctcacactcacctggagatggaattcatgggaactgtaaccattgatgatttctttagtggtcatgctgcagcattggctggtgggacaacaatgcacattgacttcgtcattccagtgaatggcaatttaactgcaggtttggaatcctacaaacagaaggcagaaaaatctgccatggattatggatttcatatggccattacaaagtggaatgatgatgtttcgagggaaatggaaacgatggttaaggaacatggtcagtacttctttttgtgctgtcagttattttcatcagaaataagaaattccattctggttcatgaagcaactcctatgtttcaacctgaaatcaactttgcaaatttcctgtagtctgcaatgtctatcagaacatgatgctttggtactatattgtatcgtagtctaagtgccagaatttaaattgccaatatttcagggatcaattctttcaagttcttcatggcgtataaaggttcattgatggtcacggatgacctactcctgcaaggcttacagaaatgcaaatctcttggtgccttggctatggttcatgcagagaatggggatgctgttgctgagggacagcaacgaatgatcgatcttgggataactggcccagaaggacatgctctctcaagacctccagttgtaatttcacactaactcttcgcatttactgttatgcctatttatcttgatatgttggacagatcaagtgttttcttatacaatattcaagtcaatttggtgaactagacacaccatgaaatttgtgtattttctctcacaaggaaggatagataccattgagctgcttcttgttccctgcagttggaaggggaagcaactgctcgggcaattcgattagccaagtttgtcaatacaccattgtatgttgttcatgtgatgagcattgatgcaatggatgagattgccaaggctaaaagagaaggtctgccaccttacctttcagttgcaatcaaattactcatgcatgcaagcaagccagagtttttatatgaatgaatatgttcctagaaagatacattgtatatgttcatttgcacttttaagtagtctggtttcaaataacaagctggcctgggtcctgggaactgaaaagtcgcattggattgatcatgccccagatatctacattgatataaatttggcaagatatctcaatttgacaaacaaagcatatattgatacaaattcatactttgcagggcagagagtcattggtgaacctgtggtttctgggctagtacttgatgattcttggctttgggatccggacttcatgatagcttcaaagtaaataaaagcacaaatttaatgctttgtttatgcaattgtggtttcttttatctcatatcacatttctaggtatgtaatgagtcctcctatccgagaagcaggacataataaagcacttcaagttgctctttcatcaggaattttacaggtgatacttttcataccctcagtttgacatcacggagttactttttcatcttagctaatatttggaggtcagttagcaaattataggggcgcactgtttgcttgcagaaacttataccttgctaaggggtagaaaacttcacatggatgactatctaactgctcttcatttctatgcagcttgtaggaactgatcattgcaccttcaactccacacagaaagctttcggctctgatgatttcagaaagattcctaatggtgttaatggtaatccttgtgggttgtgaatttcaacgttgacaaataagtatataaaagaacttttgattttataaggaattcgtgtttggtttgaataaacccagctaaggcatctctctcttaaacgcttgaccccaggtatcgaggaaaggatgcatattatttgggacagtatggtggtaagttgatattttgaatggtgtttttaatggaaaatattctacagtatcaaaaaaaaagtcagcaatccagtggttccatttccagtatatctcttatctgacattcatacaatgtatgcaggagactggccgaatttctgtcagtgattatgtgagagtgacaagcacagaatggtatattgaagaaattcactagctatcattttaaacaacaaattccccactattcaacgaagtacaatgatcaaattactcaaatcttttcagtgccaagattttcaacatataccctcggaaaggagcaattctggaaggatctgatgcagatattatcatcctgaatcccgagaggagctttgtcatgggtgcccacacacaccattcaaggtccaacacaaatgtgtacgagggcaggaaaggaaaggtcggtccctcgttactcacaactgcatttgcaaaagcttgaattcaacttatgttttctttttctctctcaatcggtgtagggaatggtagaagtcacgatctcaagagggcgagttgtgtgggaggatggcattctgaacgttgttcccggttcaggaagatacgtcagaacaccgccttacagctacctgtttgatggcattgaaaagtcagacgctgcctacagagcctcccttcgtgcccctgtgaaacgtggcaaggctgctgcttaacgatgcccgctgctgatgaactacagaactagtttctccaaggtgaacgacgtctgctccatgcgtaacttccttgtgtttgtgtatacagatctcattattcatatcattttctgataggtaagaatgtaaaattacctgatactacctccgttttttaatagatg</dnaseqindica>

External Link(s)

NCBI Gene:Os01g0807900, RefSeq:Os01g0807900