Os10g0512700

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Revision as of 08:44, 21 June 2012 by 127.0.0.1 (talk) (Created page with "{{JaponicaGene| GeneName = Os10g0512700| Description = Similar to SH3 domain-containing protein 3| Version = NM_001071580.1 GI:115482903 GeneID:4349099| Length = 3510 bp| ...")
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Gene Name

Os10g0512700

Description

Similar to SH3 domain-containing protein 3

Version

NM_001071580.1 GI:115482903 GeneID:4349099

Length

3510 bp

Definition

Oryza sativa Japonica Group Os10g0512700, complete gene.

Source

Oryza sativa Japonica Group

 ORGANISM  Oryza sativa Japonica Group
           Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
           Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; BEP
           clade; Ehrhartoideae; Oryzeae; Oryza.
Chromosome

Chromosome 10

Location

Chromosome 10:20206916..20210425

Sequence Coding Region

20207145..20207261,20207375..20207449,20207571..20207726,20207851..20207913,20208010..20208210
,20208424..20208525,20209399..20209550,20209652..20209721,20209855..20209971
,20210113..20210172

Expression

GEO Profiles:Os10g0512700

Genome Context

<gbrowseImage1> name=NC_008403:20206916..20210425 source=RiceChromosome10 preset=GeneLocation </gbrowseImage1>

Gene Structure

<gbrowseImage2> name=NC_008403:20206916..20210425 source=RiceChromosome10 preset=GeneLocation </gbrowseImage2>

Coding Sequence

<cdnaseq>atggaggccatccggaagcaggcgtccaagctccgggagcaggtcgcccggcagcagcaggccgtgatgaagcagttcgggggcgggtacggcgcggacggcgcgttcgccgacgaggccgaggcgcagcagcactccaagctcgagaagctctacatctccacgcgcgccgctaagcacttccaaagggacatagttcgcggggtggagggatacattgtcacagggtcgaagcaggtcgaaatcggtaataagttatgcgaggatggcaagaagtatggagcggagaacacttgcaccagcggaagcacgctgtcgaaggcggcgttgtgtttcgccaaagcacgctcactgatggagaaggagagagggaacctgctgaaagcactgggtactcaggtggcagaaccgttgagggctatggtgatgggagctcctttggaagatgctcgccatcttgcccaaagatacgacaggatgcgtcaggaagccgaagcacaggctattgaagtctcgaagcgccaaatgaaattaagagaaacatctgggaatggtgatatgatttcaagattagaggctgctgaatcaaagttgcaagagttaaagtcaaacatgggggttctaggcaaggaagccgttgcatcaatgactgctgttgaagctcaacagcaaagactgaccttgcaacgactaattgcaatggtcgaatctgagagaagttatcaccagagggttctgcagattcttgatcaacttgaaagagagatggtatctgagcgccaaagaattgaaggagcacctcctccagctgttgagagttctatgccaccaccaccttcatatgaagaaattaacggtgttttcatgaggaatccaacagtcgctgaattggtggaaactgtggaattcttcttggctgaggccatccagtcttatcgtgctgagagtgaaactgagctcaacctggcagctggtgactatatagttgtccggaaggtgtcaaacaatggatgggcagaaggtgaatgcagagggaaagctggctggttcccttacgactacatcgagaaaagggaccgtgtgcttgcaagtaaagtcgcccaggtcttctag</cdnaseq>

Protein Sequence

<aaseq>MEAIRKQASKLREQVARQQQAVMKQFGGGYGADGAFADEAEAQQ HSKLEKLYISTRAAKHFQRDIVRGVEGYIVTGSKQVEIGNKLCEDGKKYGAENTCTSG STLSKAALCFAKARSLMEKERGNLLKALGTQVAEPLRAMVMGAPLEDARHLAQRYDRM RQEAEAQAIEVSKRQMKLRETSGNGDMISRLEAAESKLQELKSNMGVLGKEAVASMTA VEAQQQRLTLQRLIAMVESERSYHQRVLQILDQLEREMVSERQRIEGAPPPAVESSMP PPPSYEEINGVFMRNPTVAELVETVEFFLAEAIQSYRAESETELNLAAGDYIVVRKVS NNGWAEGECRGKAGWFPYDYIEKRDRVLASKVAQVF</aaseq>

Gene Sequence

<dnaseqindica>3165..3281#2977..3051#2700..2855#2513..2575#2216..2416#1901..2002#876..1027#705..774#455..571#254..313#agaagaagaagaaagtagcaagccggagtcgagagcctctcaacccatcggccatcgcccaccaccgccattcgccaccacctcgcctccgattcagatctccctcccccccttccattccacgcccatcggattccctcccgattccgctccattcctccccgcctccgcccccatctccgccgacctcgtcgtcgtcggcgtcctcatccaggcagtctcggcggcgattcgatcgccgccacggtcgccgatggaggccatccggaagcaggcgtccaagctccgggagcaggtcgcccggcagcagcaggtgagcccagattcgagattccctacccctcctcgtggattcctcgatcccagctcgccgtgtctccctccggtcgagatctcgtgctgccgctcgcgcgcgctctcccatggctgacacctcgggagtttcgcatcgcaggccgtgatgaagcagttcgggggcgggtacggcgcggacggcgcgttcgccgacgaggccgaggcgcagcagcactccaagctcgagaagctctacatctccacgcgcgccgctaaggtacttggatttgttcccttgcagttttacttatggtaaccagccctgccttagctatgttcttgctgccatttcgccttccattccattgcctcgcttagaaatgtgctgcccttttgcaccgccattgcagcacttccaaagggacatagttcgcggggtggagggatacattgtcacagggtcgaagcaggtcgaaatcggtaaggaaatgctggactgttgtttctcaattgttcgcgagtaccgcatcctgtttatcatttttgaatgtgggttcgcaatgtgcttttgtggtttgcaggtaataagttatgcgaggatggcaagaagtatggagcggagaacacttgcaccagcggaagcacgctgtcgaaggcggcgttgtgtttcgccaaagcacgctcactgatggagaaggagagagggaacctgctgaaagcactgggtactcaggtactgtttgatggtttcatattcataatctccatatgatatacataggcatactattatgtaagatcagtgactgatgtgttatctgttatgcttgaaattcttctgcatttaattaagtagagccggtctgatgcgttatctgctatgcttggaatttttctgcatttgatcaagtagagccagagaatgacacatagattcgattcatgcattgtctccttgattcgtatgtcagttaccatacaacaagacaaaacaccatcttgtaatatgtttttttaaccctgtctatgactcaacgtaatgtgctgtgctcgtaggataacaatatatattatggttatttgtggtaatacatccgtgctcattaatgtatctaggctctagatttgctatttagttattgaaggtgagtgatttgccaggttcagagccttgtcctagttccttttatgctcttaactatttcaaacatgcccccccccacccccaacacacacacacacaaacaaagtagaagatagaaagtggggaaacttactgcatgtactactgttcacgggtgggagaaatgacttgtagcgtctaagatttcaactgtaggctgtagctggttgctagcagcggatggctacctattggcatatgacttcattttgtgatgttatgtctttacagtttttattttgttattaacctagcacctgttaaaaacatgtatcatttgtaaaatatccattaccatgcacaggctaataactaccttattctgcaatgaatgccataatgcccttgcaaattgtaatcttgtgcatatattttactcaaatctgcatgagactgttctgacatatggattaatatcattaggtggcagaaccgttgagggctatggtgatgggagctcctttggaagatgctcgccatcttgcccaaagatacgacaggatgcgtcaggaagccgaagcacaggttatctcactatgaaacatactgtctttactacccttcatatgttgcctattgttatggtgatttctattaaacatactgtctttaccctttttatctgttggctgcctattgtgatggtggcagatttgagtttcacactgatatgttatgccacaattttattttcattgatcatataagaaacttagtaaggtactgtgagttctgcaggctattgaagtctcgaagcgccaaatgaaattaagagaaacatctgggaatggtgatatgatttcaagattagaggctgctgaatcaaagttgcaagagttaaagtcaaacatgggggttctaggcaaggaagccgttgcatcaatgactgctgttgaagctcaacagcaaagactgaccttgcaacgactaattgcaatggtatattctatgcttgtttagtttggccaattgattagttccttgtttgccttgagaaataaaatttctttacatgacactactgacttactgaaggtcgaatctgagagaagttatcaccagagggttctgcagattcttgatcaacttgaaagagaggtactgatgattttgtacagcatccttatcaaacttatacagaaaaggaacttgttaactatcgaaaaagaactgctttgttttggttatcctgattcagtctcttgtttctttacttttacagatggtatctgagcgccaaagaattgaaggagcacctcctccagctgttgagagttctatgccaccaccaccttcatatgaagaaattaacggtgttttcatgaggaatccaacagtcgctgaattggtggaaactgtggaattcttcttggctgaggtacccaatcatcacttcaccacaatgcacaagtttgtagcttactactacagtacttctaataagttttgtctgttgagattttattgctgatttctatgcatggtcatctttttgacaggccatccagtcttatcgtgctgagagtgaaactgagctcaacctggcagctggtgactatatagttgtccggaaggtacggccctatcttcccattggacatgtttctaaccataaacatatctttgctggacttttgtgggcaaagttggctacactaaacttgtgttcattaacctgctcaatcaggtgtcaaacaatggatgggcagaaggtgaatgcagagggaaagctggctggttcccttacgactacatcgagaaaagggaccgtgtgcttgcaagtaaagtcgcccaggtcttctaggcgttcaatgagccatacatacataaccctggtgttgtacactgtattatgatcgttcgtgatcttcaaagaccctctgatcagagaaatcacaaatattcttttgttctattattgtcattatcactaccccttttgtcaaaaccagtgcagccttttgtatgacatcttgttgcatggctagctttctgaatatttcaaaatatacagcggagaggacactgttcat</dnaseqindica>

External Link(s)

NCBI Gene:Os10g0512700, RefSeq:Os10g0512700