Os01g0820000

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Revision as of 05:07, 25 June 2012 by 127.0.0.1 (talk) (Created page with "{{JaponicaGene| GeneName = Os01g0820000| Description = Similar to Cinnamate-4-hydroxylase (Fragment)| Version = NM_001185699.1 GI:297720532 GeneID:9270590| Length = 8712 b...")
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Gene Name

Os01g0820000

Description

Similar to Cinnamate-4-hydroxylase (Fragment)

Version

NM_001185699.1 GI:297720532 GeneID:9270590

Length

8712 bp

Definition

Oryza sativa Japonica Group Os01g0820000, complete gene.

Source

Oryza sativa Japonica Group

 ORGANISM  Oryza sativa Japonica Group
           Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
           Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; BEP
           clade; Ehrhartoideae; Oryzeae; Oryza.
Chromosome

Chromosome 1

Location

Chromosome 1:36717823..36726534

Sequence Coding Region

36717823..36718423,36718730..36719524,36726208..36726373,36726399..36726534

Expression

GEO Profiles:Os01g0820000

Genome Context

<gbrowseImage1> name=NC_008394:36717823..36726534 source=RiceChromosome01 preset=GeneLocation </gbrowseImage1>

Gene Structure

<gbrowseImage2> name=NC_008394:36717823..36726534 source=RiceChromosome01 preset=GeneLocation </gbrowseImage2>

Coding Sequence

<cdnaseq>atggtactttgggttgggcttcttgggccttgctggacgtgtcttctgtgtgtcatcttccttagtctgagtatcctcctcgcgtgccaccagctcgccctcttcagttatctgctcttcttctccatcatcttcaccagcttctcttcttcttcttcagcgacatcatcgtcaggtggaacaggtggacacctgacactctctcgcctgctaccgtcgtcgccgcctcccctgtgttcccctccgcacgcctccctcctgactacgggcactgttggtgacggcggtggcggctgggtcagttgccaccgcttcccacgcggccgtcgtcgtcgccatggacctcctcttcgtggagaggctcctcgtcggcctcctcgcagccgccgtggtcgcgatcgccgtgtccaagctccgcggccggaagctccgcctgccacccggccccaccccggtgcccgtcttcggcaactggctgcaggtcggcgacgacctcaaccaccgcaacctggcggcgctggcgcggaggttcggcgacatcttcctcctccggatggggcagcgcaacctggtggtggtctcctcgccgccgctggcgcgggaggtgctccacacgcagggggtggagttcgggtcgcgcacccgcaacgtggtgttcgacatcttcaccggcaaggggcaggacatggtgttcaccgtgtacggcgaccactggcgaaagatgcggcggatcatgacggtgccgttcttcaccggcaaggtggtgcagcggcaccgcgccgggtgggaggccgaggccgcggccgtggtggacggcctccgcgccgaccccgccgccgccgcctgcagctcatgatgtacagcaacgtgtaccgcatcatgttcgaccgccggttcgagagcgcggacgacccgctgttcctccgcctcaaggcgctcaacggcgagcgcagccgcctcgcgcagagcttcgagtacaactacggcgacttcatccccatcctccgccccttcctccgcggctacctcaggatctgcgaggaggtcaaggagacccgcctcaagctcttcaaggacttcttcctcgaggagaggaacgatcgagacgacgctgtggtcgatggagtgggcgatcgcggagctagggtgaaccacggggagatccaggagaagctgcgccgggagctggacacggtgctcggcccggggcgtcagatcacggagccggacacgcacaggctcccctacctgcaggccgtggtcaaggagacgctccggctgcgcatggccatcccgctgctggtgccgcacatgaacctccgcgacgccgagctcgccgggtacggcatccccgccgagagcaaggtgctcgtcaacgcgtggtacctcgccaacgaccccgggcggtggcggcggccggaggagttccggccggagaggttcctcgaggaggagaggaacgtcgaggccaacggcaacgacttcaggtacctgccgtccggcgccgggcggcggagctgccccggcatcgtcctcgcgctgcccatcctcggcgtcaccatcggccgcctcgtccagaacttcgagctgctgccgccgcccgggaaggacagggtcgacaccaccgagaagggtgggcagttcagcctccacatcctgaagcactccaccattgtcgccaagccgagagcgttctag</cdnaseq>

Protein Sequence

<aaseq>MVLWVGLLGPCWTCLLCVIFLSLSILLACHQLALFSYLLFFSII FTSFSSSSSATSSSGGTGGHLTLSRLLPSSPPPLCSPPHASLLTTGTVGDGGGGWVSC HRFPRGRRRRHGPPLRGEAPRRPPRSRRGRDRRVQAPRPEAPPATRPHPGARLRQLAA GRRRPQPPQPGGAGAEVRRHLPPPDGAAQPGGGLLAAAGAGGAPHAGGGVRVAHPQRG VRHLHRQGAGHGVHRVRRPLAKDAADHDGAVLHRQGGAAAPRRVGGRGRGRGGRPPRR PRRRRLQLMMYSNVYRIMFDRRFESADDPLFLRLKALNGERSRLAQSFEYNYGDFIPI LRPFLRGYLRICEEVKETRLKLFKDFFLEERNDRDDAVVDGVGDRGARVNHGEIQEKL RRELDTVLGPGRQITEPDTHRLPYLQAVVKETLRLRMAIPLLVPHMNLRDAELAGYGI PAESKVLVNAWYLANDPGRWRRPEEFRPERFLEEERNVEANGNDFRYLPSGAGRRSCP GIVLALPILGVTIGRLVQNFELLPPPGKDRVDTTEKGGQFSLHILKHSTIVAKPRAF</aaseq>

Gene Sequence

<dnaseqindica>8112..8712#7011..7805#162..327#1..136#atggtactttgggttgggcttcttgggccttgctggacgtgtcttctgtgtgtcatcttccttagtctgagtatcctcctcgcgtgccaccagctcgccctcttcagttatctgctcttcttctccatcatcttcagtaagcttttcctcctcttcttcagccagcttctcttcttcttcttcagcgacatcatcgtcaggtggaacaggtggacacctgacactctctcgcctgctaccgtcgtcgccgcctcccctgtgttcccctccgcacgcctccctcctgactacgggcactgttggtgacggcggtggcggctgggtcaggtaaggtgagcacgaggcgtgtgccctctgcctccctcctggccacgggcaccgggcgtcttcggtgaaggccacagcggctgggttggcgaggacgagcagaaggctctggaagaaccggcatctggactgcaatgcaacgcgtcgccggaaatcgggtcaatgcaagtggagcaccattcaagcaactaagaaaagtagtagttgctatgtctgatcatttgcccgtgtctttctgtctttcatcaaaatgttggggtgttggtttctgcaattctgctattgtttaaccaaattagttcctcggacctcagtcttgctaaaagtgatggggtgtatgatgtatcgctcacacagtcacactgggtagactgtttgcagcaatgacaaaggcttatgaattagtatacggcatctttggtgttctgaaatctagaatgtgatgaattgatgtgtaaaaaagattgtgattgtttgtctgaggttcatttctgcaagatatattgggtacaggggtagcagcaatcctgaaagaacacagcattaccacaagtgcagttgtgagcagcgatcatagcagaccatctcttttatttggctttgttcaatatcatcgtttctggacgttcacatttatcatatttccatgttctagagaaaaagacaagcgtgcatggagtttctatgaaaaaaaaggtaaaaagaccgaatgaacgtacagatcttcagaaatgttcagaaacgtgcagtgcaaatgttcagaaatcaacacattgtttgcaggtcttgttgaatttgcacgccaaggctttgaattatgtatgcgctagtgcgatccatggccaaaaagaaagtctagcggaatgtgtttttcgccggcaacaggctgtgaattgcaatcagccaatcacttctatctctagataaccaagctcctctggtcgccggcgtctccggcagagatcttcccagccttgatcgacgccgacgagggggcagctacaaggggaacgatgtggatgaggacgagagagcttaattagaaaggcggcgccgcggcggcgacggcaaatgcggaaggaccgctgctctgcggagccgatagaggcgtgcgagccgaaccgagttagccgacgtctgtgtccaagtcacgccgcctggagccccgcggggagcgccgtccgatccaaatgtaatccacgtggcattcatccgggccagggctccacagccaccggtttgcatccggtctccaccaaaatttttttcctgctacccgctgtgtcccggtttcacggcagcatatcaaacttatccaggccactggttttcggatccaacggtgggtgtatctctagtacacgttaccgtgcatcgcagttgcaggcttgaagtgcaagcagacaggcagagcaattcccacatggagcaaaggaacaggaaaaatcatggtgtaccggccgccgcggccggctctactccctacgtataaaaaactacggacctatttagattgtagccaaaataaatcctatcaaaatttagcaatttaataatattgttaagttttgacaaaatttcttatgtatttttcaaagtttgataaaaaaactaaatggatatatatatttgacaactttatcaaaatttggtaaggttcagtggtggatctagaacttttttttttagccgaggcaaacctaacaatagaaaacaaattaacacgtaaacacaaatacatgtagcattttatcatggatagaagtaaaattgagcgattagttaatgactgagtatgataattagtgctaatctaatggtgcaagtacagctaggctaatggctaagcaccatagttagttctaatgcttgaatgcatgcggcggagcccgggcgtctgcctgtgctggccggaccttggctccgccgctggtaaggtttatttcgtatacaatctaaaccggccctacatcaacctgatcgatgcatgccgtgtgcccatgtgcatcagcgagtttgcgcgagaaacctctaaaatgattttttagggataggtagggagctcctgcaatttcagtatagaagaagagagttgatccagtttataaggaaaatcgaaaaaaaaaacttaaactccataatgttttcgtttgcgtaacccaatcgtacgtctcacgtccgtcaaggtcaggaggaaaccggcacgatcttacgtgaaacagccaaacaggcggctgtacgtgctcggcttgttcgttcggttcgatgcagccagcagccagacctgtgcgcgcaaggttctcacgaaatcctttcgcgatgctgcaggaagacaagcagtgcactagtgaccgtacgtgtggctgtttcgcgtcgccacttgcttgctttcctagctacaacgtgaagttttgtacgctacctatctcctgttgggagacatacttgcatacatgagttacacgctcatactaacgacactattgatatttataaacgaaaaataatttataaataaaatttttatatttgtgttcttagcggtataaaagtaaatgctgaaaaataaactttgataaaaaaacccccaaaatcagctccaaatttaaggttgaaaattcaagaattggctgataaccataagcataaatgaaaagatgacacgcttgctcttccacttgccatcaaaattgttcgacatatccccaacgagcgatcgagaagacaaactccaccaaatactttctttgttttatattataagtcatttgactattttttaagtcaaacttagcaaagtttgactaaggcccagttctttttctcaactcctcgttttccgttaacatgctttttaaattattaaatggtgctttttgacaaaatgtttctacgtagaagttgtctaaggaattcaaataaacccatttttcaattttataataattaatacttaattaatcatatgctaatgagctttctcgttttgcgtgcgctgaaaatctgtctctcaactcagagatcgaaggggcttaagtttatagaaaagtttagcaacatctaaaatatcgatttagtttcactaaatctaacattaaatatgtgggactagctattcagctgtcgacagtttttaatagtgaaaactttcgaattttttgcacctcacaatctgcaatcaatgggccacacgaaacgggtctgaaccaactgaaagcacgaaaccaatccgtttagagcgtgcagacctgttaagaaaccctgaactaacttgtcagggttatgaataccacatacctaatagtagttgactaaatctcggcaggacccaccacataccatgtcctatacagaaacaacttgcggatataggaggagctccggataagaaaagacaaccagagttctacgtggaaacgacaaggactacttggattgtatccatattggtttccctagttctacttggacaaggggacacctatgggtataaatacaagaccccctaggaggagaggggacacggacaacatagacgccacaaagccacaagccaacatacgccaagacaagccgtcggatatcgacatcagagatatgcctggatcgaccctatctggtacctacagaggccggccgtagggatctagcgttgtctatgatctcgctgggcacaaactcgaggaggaaggctaccctgttgtcgactacgagtcagaccttcagaccgccatatcgacaacagttagataggctaccccaaatattgtactggtgtgattatggtgaataagagcaatattggcttcggccaacatgatatagggttattacctgacaatttaagggcccgaacctgtataaaaaccctcgtccccatctcttttacttcagtcttgcatataccttaataccaacgatgtccatactatgcaaataccagaatcgcgacatcaaacgtcgacataacccattttaaattagcacactgtaactagtctataagttctatgtaactgtaatataattaaacttattttgcatagcgcaataaaaaattaatgctctatgtgtagatgataattgacggtgactgtgcaaccaaacaaatatatcacatataagcaacagtgcaaccaaacaaatctctcacgaatcatggcgccagatcgaacggccagaaaatcgaatgtttccggcattcaaaactgttaacagctagctagcaaaaccatgaatatattttgataatatatttgttttgttgaaaatattactatatttttctataaactttgttaaactctaaaaagcttaactaaaatgttaaacaatttataatataaaacggaaaaattactatcttggtcataaaatggtactgatcgatagaatattttttagcataacaaattcggacagtgagtaatattttaggacgaagaaaatactgacacaagtcaaaatccaactcccatcccacctacccagccaccaacaaaccctttttttgcttttttaccatggtagtatcacctaagagcaggtacaatagtaggctataagccagctataaacatattttaaaaagataaaaaaagagagagaaaagcagcgggctacagatctgcagctggctgcagtacggactccaagacataatgtgtgtatgacagatgggaccaggtactaatagtatagtaagcaattattgtataaattagctattacattgactatagatattttggagctcatagtgagctatacgagctcactatgagctctaaggcttcgttcgttcttgggcgatctgggggattgagagagaaaagcatctcgttttccgcgcgcacgcttcccaaactactaaacagtgtgtttttttttaaaaaaaattatataggaaaattgctttaaaaaatcatattaatccatttttgaagtttaaaatagttaatactcaattaatcatatgctaatggctcacctcgtttcgcgtatcttcccaatctccccaatccctttctcctcaaacacaccctaagagcacccacgatggttatctataggctctctacaagatatctatatcagcatattttcctacttgaaagagattaaatgaagaaagagagcaaagctatctactaacttagagatagtctatagagaaaaacgaggcaatgcattagagagctatagatacccatatagacatactattgaggtggtttactattaatctaatctattgctgagatgtacatgttttataaaaagcacattcctttaccattgcgagtgctctagaggaccaacaactctagccagaaatatgaagaggactggacaatgaagccttgcaggccacaggatttccacgcactcgcacaccgtccaccgtgcgtgtactgccgcgcgcttgcacgctgcagcaccaccaccatggctcactcacctaacgccgtcacagttcacgtcgtttctcaagatcaccaaatgttattagatcattcataatgcgcggacgtgtcgttgagcgctaggaacggaatatccgacgtcacgtcctctgtcagcgttgccccgtaaagaacacggagccaaaactgatcacccattcttcggcctgaccgaggggaaaggggcacagctccacgttgtggaggtcggagcctcgccactcgtggctttgcgtaggcgtccacgcaccttttcccctcccgtgctttcctttctctcgtgcaagagcggtggaaaggagaacgagaacggcaggctggcaacacaagatggcagtggaagcgagaacaagcatcgggagagaagaggagcctactagggtctgtctgccgtcgcccacccgcccgccgccgaggccactcaaccacgttgccggcaagccgccaaaccggtgtcgatttctccgccaaatccgccgccaaggccactcaaccacgaaagttggccaggagaggagggccgccggttggggagatgatgaggagcgctggccgtgggaggagacggggttgccgggtgcaccgccccttcgatccgtgtcggtcaagctcgccgaccacgccacccggagctcgctagccgcctgcctctcgccgaccacgcttggactggtgtcgacattggtggagagaggaggggagggggagaggggcgccgccggcgagatagccgaagccggactgccggtgtagggagaggaaaagggagagaggggggaggtgaggggggattttatatatttgtttttttagatttttggggtgttcagtgtgaattttggacctctacacaaattacgaaaaatattagaactaaaacaaaaaatttagggactgaagtataaaaattaaagtcacttctaaagccacttacactgtgacactgtgaaggattaagattttagaccagtgatcttaatttatgtggcactctgagctcctcaaatgagagggacgcatgaatggccttagcaaccaaccaatcctccgccaccaaactcccctacctacccacagccgtcaactcttcaacggcgactcccctatataacacgcacagtcgcgtcgcgtcgcgtcgctcctccagcaacaacgaaccaacggctgagagtagagtacgtgaagttaagtgaagtgaagagacgctttgcattgcagttgccaccgcttcccacgcggccgtcgtcgtcgccatggacctcctcttcgtggagaggctcctcgtcggcctcctcgcagccgccgtggtcgcgatcgccgtgtccaagctccgcggccggaagctccgcctgccacccggccccaccccggtgcccgtcttcggcaactggctgcaggtcggcgacgacctcaaccaccgcaacctggcggcgctggcgcggaggttcggcgacatcttcctcctccggatggggcagcgcaacctggtggtggtctcctcgccgccgctggcgcgggaggtgctccacacgcagggggtggagttcgggtcgcgcacccgcaacgtggtgttcgacatcttcaccggcaaggggcaggacatggtgttcaccgtgtacggcgaccactggcgaaagatgcggcggatcatgacggtgccgttcttcaccggcaaggtggtgcagcggcaccgcgccgggtgggaggccgaggccgcggccgtggtggacggcctccgcgccgaccccgccgccgccgcctgcagctcatgatgtacagcaacgtgtaccgcatcatgttcgaccgccggttcgagagcgcggacgacccgctgttcctccgcctcaaggcgctcaacggcgagcgcagccgcctcgcgcagagcttcgagtacaactacggcgacttcatccccatcctccgccccttcctccgcggctacctcaggatctgcgaggaggtcaaggagacccgcctcaagctcttcaaggacttcttcctcgaggagaggaagtgagtactcctccatgagcgagactccatcaattagccaccagaaatcctctgctcacgtcgcatggtgggtgtttctttcttgtgtgtgtgcaggaagctagcgagcaccaaggccatggacaacaatgggctcaaatgcgccattgatcacatcctggaggcgcagcagaagggggagatcaacgaggacaacgtgctctacattgtcgagaacatcaatgttgccggtacgcgtgcctcggttcagttaacagtttcttcttcttctttttaatttattttcgttaaccatgttgcttgcagcgatcgagacgacgctgtggtcgatggagtgggcgatcgcggagctagggtgaaccacggggagatccaggagaagctgcgccgggagctggacacggtgctcggcccggggcgtcagatcacggagccggacacgcacaggctcccctacctgcaggccgtggtcaaggagacgctccggctgcgcatggccatcccgctgctggtgccgcacatgaacctccgcgacgccgagctcgccgggtacggcatccccgccgagagcaaggtgctcgtcaacgcgtggtacctcgccaacgaccccgggcggtggcggcggccggaggagttccggccggagaggttcctcgaggaggagaggaacgtcgaggccaacggcaacgacttcaggtacctgccgtccggcgccgggcggcggagctgccccggcatcgtcctcgcgctgcccatcctcggcgtcaccatcggccgcctcgtccagaacttcgagctgctgccgccgcccgggaaggacagggtcgacaccaccgagaagggtgggcagttcagcctccacatcctgaagcactccaccattgtcgccaagccgagagcgttctag</dnaseqindica>

External Link(s)

NCBI Gene:Os01g0820000, RefSeq:Os01g0820000