Os01g0834700

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Revision as of 05:09, 25 June 2012 by 127.0.0.1 (talk) (Created page with "{{JaponicaGene| GeneName = Os01g0834700| Description = Zinc finger, CCCH-type domain containing protein| Version = NM_001051257.1 GI:115440884 GeneID:4327416| Length = 479...")
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Gene Name

Os01g0834700

Description

Zinc finger, CCCH-type domain containing protein

Version

NM_001051257.1 GI:115440884 GeneID:4327416

Length

4793 bp

Definition

Oryza sativa Japonica Group Os01g0834700, complete gene.

Source

Oryza sativa Japonica Group

 ORGANISM  Oryza sativa Japonica Group
           Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
           Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; BEP
           clade; Ehrhartoideae; Oryzeae; Oryza.
Chromosome

Chromosome 1

Location

Chromosome 1:37523430..37528222

Sequence Coding Region

37523634..37523808,37523918..37524004,37524465..37524605,37524706..37524794,37526097..37526285
,37526396..37526526,37526611..37526713,37527711..37527896

Expression

GEO Profiles:Os01g0834700

Genome Context

<gbrowseImage1> name=NC_008394:37523430..37528222 source=RiceChromosome01 preset=GeneLocation </gbrowseImage1>

Gene Structure

<gbrowseImage2> name=NC_008394:37523430..37528222 source=RiceChromosome01 preset=GeneLocation </gbrowseImage2>

Coding Sequence

<cdnaseq>atgccgccgaagaaggcagcgccatcgaaggcggacctggccaagaagcagaaggtcgtggaggacaagacgttcgggctcaagaacaagaacaagagcaagaacgtccagaagtacgtccagtccctgcatcaggccgtccagcccaagcccgacccgaccaagaccgccgccaagaagaagaaggaggaggagaaggcgcgcgagaaggaactcaatgatctattcaaggtcgccgtcagccagcccaaggtcccagttggtgtcgatcccaagtccatagtgtgtgaattctttaaggttggccagtgccagaagggttttaagtgcaagttctcacatgaccttaatgtccaaagaaagggtgaaaagattgatatttacactgacaagcgtgatgcagaaaccatggaagactgggaccaggagactcttgagaaggttgttgcgtcaaaaggagcagagtaccagcagaataaacctactgatattgtttgcaagtactttcttgatgccgtggagaagaaacagtacggttggttttgggtttgcccaaatgggggcaaagattgccactacaggcatgcacttccacctggctatgtactgaagtcccaaatgaaggccttattggaggaagagagtgaaaagattgctatcgaagatgagattgaagatcagcgtaaaaaggtaaaaacaacaactcctatgaccacagatttattcatggaatggaaaaggaagaaggcagaagaaagagaagctggtctggctgccttgagggcagagagggctaagaatgatcgcatgagtggccgtgagctgttcatggctgattcaagtgtgttcgttgatgatgctgaagcatatgatgtatatgaaagacaggaagaatcagaggctaatgaagaaccgagcaataaaaaccaggatgaggggccaagttcatcaacttctaatggcaaggaggtggaagagtccgatgatgaagatataaatattgatgatgacctggacattgatgagttaaacgagcttgaagcaagcctgtcaagaacttccattcagattcgagaacctggcgagggaacatcatcttga</cdnaseq>

Protein Sequence

<aaseq>MPPKKAAPSKADLAKKQKVVEDKTFGLKNKNKSKNVQKYVQSLH QAVQPKPDPTKTAAKKKKEEEKAREKELNDLFKVAVSQPKVPVGVDPKSIVCEFFKVG QCQKGFKCKFSHDLNVQRKGEKIDIYTDKRDAETMEDWDQETLEKVVASKGAEYQQNK PTDIVCKYFLDAVEKKQYGWFWVCPNGGKDCHYRHALPPGYVLKSQMKALLEEESEKI AIEDEIEDQRKKVKTTTPMTTDLFMEWKRKKAEEREAGLAALRAERAKNDRMSGRELF MADSSVFVDDAEAYDVYERQEESEANEEPSNKNQDEGPSSSTSNGKEVEESDDEDINI DDDLDIDELNELEASLSRTSIQIREPGEGTSS</aaseq>

Gene Sequence

<dnaseqindica>205..379#489..575#1036..1176#1277..1365#2668..2856#2967..3097#3182..3284#4282..4467#gtccaccaccatctctagaactttccatctcgcctccgcctccgcctccgcctccccccacctcctaagctccaaacccaagaaaccctcctcctccgccgcccgccgcccaatccgacccgccggagcgcgaagggagaaacagggcagccagaagaagaagaagaagaagaagaagaagaagaagaagaagaagaagggaggatgccgccgaagaaggcagcgccatcgaaggcggacctggccaagaagcagaaggtcgtggaggacaagacgttcgggctcaagaacaagaacaagagcaagaacgtccagaagtacgtccagtccctgcatcaggccgtccagcccaagcccgacccgaccaagaccgccgccaaggcacgcaggatgctcagatcgaagctcttcttaccctatttttcgattgctttgcttctctgatgttcgttgttttttttttctgtttgctgtggatgtggatgcgcagaagaagaaggaggaggagaaggcgcgcgagaaggaactcaatgatctattcaaggtcgccgtcagccagcccaaggtcccagttggtatggcctcctctccaccttgtcatcacccagtctttatgtgtgtatgtctccctcgatttagggttgagcaaatagatttaggcgcactgagttgtatttgttatgctcatgtacttaatgtgaatcagtgagtttgtatgtgattgatgtgctgtattgggtgaatctcatcaggtcaatatggaaaaaaggagtatatgtccatataatctctattcgataggataacagttgtggtatggtagtgtttctaattgtattggtgctgattgatgctaatgctgctaaggtttgattgatttgttcaaagctgtacattgtgagcacattggggctaaaacaagctgtacgtagaggaagcatagcttcactaggatgagcacagcttggtatttttgtaagatgttgcaactcatatgctggttacgatgatgatgacatacattttattatgcaggtgtcgatcccaagtccatagtgtgtgaattctttaaggttggccagtgccagaagggttttaagtgcaagttctcacatgaccttaatgtccaaagaaagggtgaaaagattgatatttacactgacaagcgtgatgcaggtaaaatacactgatatgggttttaattgctatttttgtactatttgtccataattcgtcagttcatctgtgaagattctcatatgctttttcatggcagaaaccatggaagactgggaccaggagactcttgagaaggttgttgcgtcaaaaggagcagagtaccagcagaataaacctactgatattgtatgccctactcaacatattgcctgtgatccaatcattttaagtcatccccattgtgtgaatgtgtggcatgtcattttccaacttgttatgaatgaattaaaggttctagtattttgcttcttttttgtaaatatttgtgctaggcagtgcttcactgcttctatatttgcttttgcttcttgtgttgtgtcttctaatgcatgataattggatactcaaatctgaccatgaaacagttatgttttacaatttacacagaccatcttatggttagcatcattttatcctctgaatatatgttgcatacagcagttattagggtgtcctcttggtcatatcgttagcaagccacctgtgttgattttagttctgaatgcacctggaacaactagaggaaaatctgacatatgtcatgttgcaacagtggttaacatgatatggtgtgatgaattggcatggtgggactctttcttagttgcagctcatgatatggtatgatgaattgctgcgtttgttccttgcatttgggaactaatctcccacgcacggaaaacggagtgactcattagtgcataattaattattagttttttttaaaaaatggaataatatgattttttaaagcaactttcgtatagaaatatttttgtaaaaaaacacatcgtttaacagtttgaaaagtgtgcgcacggaaaatgagggagatgagttgggaaagtaagctgccgaacacagcctaagtagtcttactgtcattccaccattgctctttacttactaggattctgtgtggcaatttggctatgtacatagtttcgcaatgtgcatgatgcaacatcatttttaagtaatagctttcacctataagttatagaagccattaagattctagtctaataaatgtttgttgattatttcattccttacaaaatgctagcctaacctattgaatgccaatatattggcagtgagggaagtttgatgatgcacagtttgaaaatatagtaaattaacaagctatgattatgctctgatgcatttgcatctgttctaacaagtcatatttattgtcttcattgcattgctgctacgatttacaaaatcagttttctgtttctttatgctgtatctgttgcatttgtaacttgtattgccttctttactctctctctctctctctctctctcctggaagatgaatttatgtagcagtgaaaccataagaactccttttgttttgcaagctgaaagatgttgtcttcaaacatgatgttgatttggtaattcttttgtcttgtaggtttgcaagtactttcttgatgccgtggagaagaaacagtacggttggttttgggtttgcccaaatgggggcaaagattgccactacaggcatgcacttccacctggctatgtactgaagtcccaaatgaaggccttattggaggaagagagtgaaaagattgctatcgaagatgagattgaagatcaggtagaattacgatcaacagtcaaaattgttctgtctggaatattgaattttgttgtcttctttccacttgttcactattatgacgatctgttgccatgtccatctaacagcgtaaaaaggtaaaaacaacaactcctatgaccacagatttattcatggaatggaaaaggaagaaggcagaagaaagagaagctggtctggctgccttgagggcagagagggctaagaatgatcgcatgaggtagtatttgctcctattagtttatcgttttgagctctcgaggcttgaggtacttactgtgatagtatttgctattgtgtccagtggccgtgagctgttcatggctgattcaagtgtgttcgttgatgatgctgaagcatatgatgtatatgaaagacaggaagaatcagaggctaatgaagaaccggtaaattttcattcatgtgctataatatttgctcctaacaaattgtttgattaatgttacaactaaagattgaaagtactaattgtttgagggagcagaaaaggcccagataccctcccccaaagattctaaagttatataatggaactatcagttttggcagatacaccttgaacttaaaattatttggggagcactccttttgtattccctttgttattttcaagactattgacatgcctgaatcacaagtgggttgtagatacccaatcagaacatatgttgggctgttgtccttcacatatctgaaatcaagtctatggaaaaatgaaacatctttttaggcacttttacagaaggcggtaactgtatctatgctcgatcgcctcctgagaaattaaatgaataggacaaacttccaataaagaagtaatctgaatcttatgccaaactgattttttcttcttccatgaatgtacttaggtttatttgttggcgtgacacttcgtagtgagattattttcttagcttatttgaatgtatttattgtgcctgaaacacctgtatgcgttgaagttgaataggtatgcctggatagaatggtcaacatgaaatacacatatcatgtatccatgtcacgttgttatgttcagttcaactcattgttttcagtaaacttggtatcgcgatgcggattgtagtatcatgcaaattgaataccaatataactacatataactgaataccaatattaaattcaaattgaaacaaaagacatctcataggatcccaatcctatggtccgattttgcttggagaaaagcgaccctacctatgatcctaatcctaacaactttggttccttcaaccccccaaaataattttgttcctttatattttccgcttgaaagggattttggcagatagtagataagtgcaggctgctctgtggcaattcaatgaatgtgttacatatatttttatttccatgttgcagagcaataaaaaccaggatgaggggccaagttcatcaacttctaatggcaaggaggtggaagagtccgatgatgaagatataaatattgatgatgacctggacattgatgagttaaacgagcttgaagcaagcctgtcaagaacttccattcagattcgagaacctggcgagggaacatcatcttgagcagtaacactctggactggaaggccattgagaagtagaacaccatttttgcgccttaaattgcctacttgctttagaaacaaaaaaggtggaaggtggagcatagatgcaagtgcaatttgtttcaaccagactgatcatctatccatgattagtgaatgatgctcagtgctgttatgacatgacaattgattttttgacgcatctgccctttatattatctttgcgggagttacgttgctacttgtgaataacatgactactttttggcctcgtgcacactataaccgatttttgatgtgaaacattgccataagttcatcagg</dnaseqindica>

External Link(s)

NCBI Gene:Os01g0834700, RefSeq:Os01g0834700