Os01g0836400

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Revision as of 05:09, 25 June 2012 by 127.0.0.1 (talk) (Created page with "{{JaponicaGene| GeneName = Os01g0836400| Description = SAC3/GANP family protein| Version = NM_001051266.1 GI:115440902 GeneID:4327459| Length = 9684 bp| Definition = Oryz...")
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Gene Name

Os01g0836400

Description

SAC3/GANP family protein

Version

NM_001051266.1 GI:115440902 GeneID:4327459

Length

9684 bp

Definition

Oryza sativa Japonica Group Os01g0836400, complete gene.

Source

Oryza sativa Japonica Group

 ORGANISM  Oryza sativa Japonica Group
           Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
           Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; BEP
           clade; Ehrhartoideae; Oryzeae; Oryza.
Chromosome

Chromosome 1

Location

Chromosome 1:37601127..37610810

Sequence Coding Region

37601460..37601513,37603081..37603896,37604033..37604557,37604860..37604958,37605949..37606052
,37607109..37607286,37607362..37607832,37607971..37608111,37608878..37608937
,37609401..37609531,37609653..37609818

Expression

GEO Profiles:Os01g0836400

Genome Context

<gbrowseImage1> name=NC_008394:37601127..37610810 source=RiceChromosome01 preset=GeneLocation </gbrowseImage1>

Gene Structure

<gbrowseImage2> name=NC_008394:37601127..37610810 source=RiceChromosome01 preset=GeneLocation </gbrowseImage2>

Coding Sequence

<cdnaseq>atggcggcccagggcggggaggcggctgccggatccgacgccaagcccactgcgggcacaggcatggagcagccaagtccatctccatatcaaccttcagcttctgatcatcatttgtggtcttcttcgactggtgctccctggaactattcaatgaataactctaaccaaaacacagtttattatgacccacaaagggatgtgtcagttccaggatctactgaaaatgtgacaagtggtgcaactcatgtggtccaatcagctatgggcattactggtgcaactgattcttatgctccttactcgaattctgttcaacccggttacaatgctccacagtatccaaactattactataactgtccacaaagtacaaatgaatcttctgttcaacaaggagtagatcaaagttcaggtgctgcttatcagcctcttacttcatttcagaattcaggatcttatgttggtcctacaagtaacacatattataatgctggtgctcatcagactgcaccgggatatgctaccagcaacaattattatcaaagcaattcctggactggcggaagttctggagataatcatgtacaatcatatcagagctatactccatcagatactaatgcagcccagagttctagttcactacccaacaattcttaccattatcatcagcagtataatcaatggccttattattatgatcagtccgcaccaagttctggtggtcctgcagttgctgtcagcagtgtttctgatgcaaacactgccagcgtcagttctggttatgtttatccgagcacccaaccacctccaccaggcactacatggagaagtgatgctggtgcaactgctgtccctcccccgcaggcaccaggaaccccagtgtttcaaaatcagcatgtcaaccaggcagcaggtcccccagggtatcaaaaccagtatgtcaaccaggctccaggcaccccaggattccaaaaccagtatgttaaccaggcaccagctgtcccaggatttcagaaccagtatgctaacctagcaccaacatatcaaccgggcactacatactatagtcagttaccactaagtaaccaagcagatcaacagaaggcttcacgttggcagggtccaatttcaaacgtttcttcagtcaatcatgtttctgaaagttctcaaccaacttttcagggttctgcgacatcagatgctctcagggtaaacaaaatccagatcccaacaaatcctcgaatagctccaactcttcctatggcaatgcccaaagtagagaagagaaatttagaagctgattcatcaaaaaagcctgcatatgttagtgtcgcagtgcaaaagaatgatgtgaaagcagctcaagatggtcacgaagctgtaacgcagggatcaatccctgtttcgcttcgtacttatgttgggcggaatgtttcccgttgcaaggatgatgcccagaggtctgccgtgcagaacatcttgaaagagataatcaccaaggcaactgctgatggtatccttcatactaagaactgggacattgagccactggttcctttgccagaaaacattacaagcacaaatttgacaagctctgcaaaggatttgagccccttctccttctcaacttctaggaggagccctagtagacgtgcaaaaagcaggtgggaacctgttgtagaagaaaaggttgcaaataaggtggaattgatttccaaagaatcagcaaagaccaatacctacaatagttcagaaacaactaaaagagcgggtagaagttgggatattgggaagtttctccaatcccgtcaggctcctttaagtcaatataatcagagacctagtaaaaagaagcggattggtggtaactcaagtctaactgaaaatggaaatgtttcaagtgacagtgataaggagcaggatctgacaaaatattatgctaatgcaatcacaatagcaaattcaccagaggagaagaaacgccgggagcatagatccaagcgttttgaacgtagtcagggtgctgcatcctcaaaatctaggagctctgttccagataaggatggaacatccaatacatatgctaggagatctatgccaatgcttcttagcagaagtaatggagatgatgttagcttcgctgtggaggatttggattgggatgcactgactgtcaagggaacatgtcaggaaattgagaaaagataccttcgtcttacatcagcacctgatcctgccacagtaaggccagaagatgttttagagaaagctcttcatatggttgaaacatctcagaagaattatctgtataaatgtgaccaactaaaatcaattcggcaagatcttactgttcagaggattcagaacgagctgactgtcatggtttatgaaactcatgcgcgcttagcacttcaatctggagatttacctgaattcaatcagtgccaatcgcaactgaagagattatatgcagaaggaatcaaaggctgtcatttcgaattctctgcttacaacttgttgtgtgtcatgttacactctaataacaaaagagacttgctttcttcaatggcaagcttgccaaaggaagccaagcaagacagaactgtcaaacatgctcttgcagttcattccgctgtttcatctggaaactatgttctatttttcaaattatacaagaccgcacctgacttgaattcttgtcttatgggtaaatatgatctccctctctctgtaatttga</cdnaseq>

Protein Sequence

<aaseq>MAAQGGEAAAGSDAKPTAGTGMEQPSPSPYQPSASDHHLWSSST GAPWNYSMNNSNQNTVYYDPQRDVSVPGSTENVTSGATHVVQSAMGITGATDSYAPYS NSVQPGYNAPQYPNYYYNCPQSTNESSVQQGVDQSSGAAYQPLTSFQNSGSYVGPTSN TYYNAGAHQTAPGYATSNNYYQSNSWTGGSSGDNHVQSYQSYTPSDTNAAQSSSSLPN NSYHYHQQYNQWPYYYDQSAPSSGGPAVAVSSVSDANTASVSSGYVYPSTQPPPPGTT WRSDAGATAVPPPQAPGTPVFQNQHVNQAAGPPGYQNQYVNQAPGTPGFQNQYVNQAP AVPGFQNQYANLAPTYQPGTTYYSQLPLSNQADQQKASRWQGPISNVSSVNHVSESSQ PTFQGSATSDALRVNKIQIPTNPRIAPTLPMAMPKVEKRNLEADSSKKPAYVSVAVQK NDVKAAQDGHEAVTQGSIPVSLRTYVGRNVSRCKDDAQRSAVQNILKEIITKATADGI LHTKNWDIEPLVPLPENITSTNLTSSAKDLSPFSFSTSRRSPSRRAKSRWEPVVEEKV ANKVELISKESAKTNTYNSSETTKRAGRSWDIGKFLQSRQAPLSQYNQRPSKKKRIGG NSSLTENGNVSSDSDKEQDLTKYYANAITIANSPEEKKRREHRSKRFERSQGAASSKS RSSVPDKDGTSNTYARRSMPMLLSRSNGDDVSFAVEDLDWDALTVKGTCQEIEKRYLR LTSAPDPATVRPEDVLEKALHMVETSQKNYLYKCDQLKSIRQDLTVQRIQNELTVMVY ETHARLALQSGDLPEFNQCQSQLKRLYAEGIKGCHFEFSAYNLLCVMLHSNNKRDLLS SMASLPKEAKQDRTVKHALAVHSAVSSGNYVLFFKLYKTAPDLNSCLMGKYDLPLSVI </aaseq>

Gene Sequence

<dnaseqindica>334..387#1955..2770#2907..3431#3734..3832#4823..4926#5983..6160#6236..6706#6845..6985#7752..7811#8275..8405#8527..8692#actcgtccccctccgccgcacccgccgacccctcctctctcgtccccggcccgacggaggtggaaaaaaaaaagaaaaagaaaaaaaaactcaaaccgccgcactcgcacatccggctcgccatagtccccctcttctccaacgaaatcttcgccgtgtcaacccgcgcctccgatttctccagcttttctttcccgggattgcgcgcgtgctccctcccgctcgatccggctccgcttgcccgtgctagccgcggactcggggggtggctctcacctgttgtgaggccgctagggtttcagctcgagctctggagccgtagggcgccgggatatggcggcccagggcggggaggcggctgccggatccgacgccaagcccactgcggtatgcttcctctgctcctgattcggcgtcagtccctagcttgtgagttgtgaggcctctgccgccgcatccttttggagttgtgattatttcctgcacttgcgcggtgtgattcgcctctgctttgggttaggatgcagtgggtggtatccataatctagttgattacttcagtgttttctgcttgggcgtgttgccttgagaaacttaggtttagtgcaacggttggatatctagttgtagccggtggaagatgtttagggatgttttttttttgctaatttacttgttcacgaatttaggaaaaccaaggactgaaatagtcgaagtaggttgatgccatatattacaatgttgttgtttactactacctccttccccaaatgtttgacgttggttagttccaacgtcaaacagaaaagaatggagggagtactactgttgctttgcttatagcataatggctgcgcactcttcctatctacgtacctagttgacaagccgtcatggttgttggtcaatttgctgtggtttagccgtttagtcccccggaggttaatacatgaggcgcttataatgttgtccgttgccagcgttttggatgtaactgaatagcttgtttcattctgaaattgataacgttgtttgtctgcactctacataaattgtatgcttcattctgtactctttaatgttcagtggatatggctgatatggagctgccacgaataaagttttaaatgttattaattagagcgtgcccacctatttacaaggcgttttctttccctttttgaaaccggcatgcctaatgtttcggatatagcagtaaacaggtttcggaaagctaggatcaaagatctactggtgaaaccatttagcacgtgaggacctgctttttaggagtctgttttgtgaagtaatgccctaagtgtgaggacctgtgatgccatctgcttattctgtaagacataaatttataaagatgggcataaatgtaactgtacttatgtaggtttgtgttaaatttgttgtgcatctttgcttgaacggcaggttaaagccagttgatgctgtagtttgtgtatattctaatattgcatttattagacagtttctgctgtcatttgtttgccacgtcatccttttagattttctctgccacatctgacatgtcattatgtactatattgtgagataaagcatgaaaggggaattctgccttgtatagataaaggtggttttgtacaaaacaagtaaggggaattgtacataaaggttttttttgtataaagactgtcttataaaacaagtcattactgtgtgaatattaccttggcattctttttgcatctcatgctgtttttttttctgtgggtcacgtggcacaatagtgtactcctaatgtttttctgcctgtttctacactttgctacatggggatcgatatttctttccatgattttccctgttttgccagagaagcgtcatattgtgttgtaagttttttttttcacatcatacattgttccaacctgaaattttgtttgttctaaacaaataatagggcacaggcatggagcagccaagtccatctccatatcaaccttcagcttctgatcatcatttgtggtcttcttcgactggtgctccctggaactattcaatgaataactctaaccaaaacacagtttattatgacccacaaagggatgtgtcagttccaggatctactgaaaatgtgacaagtggtgcaactcatgtggtccaatcagctatgggcattactggtgcaactgattcttatgctccttactcgaattctgttcaacccggttacaatgctccacagtatccaaactattactataactgtccacaaagtacaaatgaatcttctgttcaacaaggagtagatcaaagttcaggtgctgcttatcagcctcttacttcatttcagaattcaggatcttatgttggtcctacaagtaacacatattataatgctggtgctcatcagactgcaccgggatatgctaccagcaacaattattatcaaagcaattcctggactggcggaagttctggagataatcatgtacaatcatatcagagctatactccatcagatactaatgcagcccagagttctagttcactacccaacaattcttaccattatcatcagcagtataatcaatggccttattattatgatcagtccgcaccaagttctggtggtcctgcagttgctgtcagcagtgtttctgatgcaaacactgccagcgtcagttctggttatgtttatccgagcacccaaccacctccaccaggcactacatggagaagtgatgctggtgcaactgctgtccctcccccgcaggtattatttcttcattagtacttgggaacctgtgactctgagcacttcctatgtcctattcattgtatatttttttattcaggtttttcccacaagtagttttgcgttgccaaatttaacagttagcaattgacaggcaccaggaaccccagtgtttcaaaatcagcatgtcaaccaggcagcaggtcccccagggtatcaaaaccagtatgtcaaccaggctccaggcaccccaggattccaaaaccagtatgttaaccaggcaccagctgtcccaggatttcagaaccagtatgctaacctagcaccaacatatcaaccgggcactacatactatagtcagttaccactaagtaaccaagcagatcaacagaaggcttcacgttggcagggtccaatttcaaacgtttcttcagtcaatcatgtttctgaaagttctcaaccaacttttcagggttctgcgacatcagatgctctcagggtaaacaaaatccagatcccaacaaatcctcgaatagctccaactcttcctatggcaatgcccaaagtagagaagagaaatttagaagctgattcatcaaaaaagcctgcatatgttagtgtcgcagtgcaaaagaatgatgtgaaagcagctcaagatggtcacgaagctgtaacgcaggtgagtaacgattctatttacttgtttttgttttggtgattatcaacgatactattattatccttcagggacaaggaaccaactttgtggaaatttaaacatgcttactccttaacatttccatttttgaaattatatttgtacattcctggctctcaaataagtggcagtgcccagattcaaaatttgtcaaatctctaatgtacttaatgcctgtcgatttctcatgtggtcatgccaaatataacatgcacagctttacatctacctgttttgtttacacaatttcctgatctgtttagggatcaatccctgtttcgcttcgtacttatgttgggcggaatgtttcccgttgcaaggatgatgcccagaggtctgccgtgcagaacatcttgaaagaggttcagtaatctgttgtttttaattctttttaaacactatatcttggtttctgtctggctggattctagttatagacgcaaccttcagttcatgagacctttagtaactatgggaatgggtaaaatagttagggttgttccatactgaagttaacacactaacatcaacgacagcaataaataaatagataggtagatatatacaaggtacataaacaaagatccacaaagaaacaatggcacagaggccagacaagcaaatagaaaacagagtagatcacgtaggtgaattcctgaagcctcttggagatttggcagaaatttcttgttagtttttacctgagaaggttcatttctgctgtaagcattctcttccacctatgcttgtttggaggaatcttgtcaaagatgtatctgttctttagatttggcagaaacttcttgttagcttaacctgagaaggttcatttctgctgtaagcattgtcttccacctatgcttgtttggaggaatcttgtcaaagatgtatctattctttataaccatatatgccagcaaccagaagggaaaaaattctttatacacttctttacaagatgtatatgcacgccttgtggagtttaaccataaaagtagagagctcctatggatctctatcaactcccagcaagctagactgaattcacaggagacacacagatgatcataatcttcaatataattgatttgcgaagaatacatgcttcactctccactttggaattcttcattttaagcatgcgcgttgcgtttgttttaccgtggagaagtagccataggaatattctatacttaggcatgcattaatttttccacaaaaagtgacttcatatttaagctcttaagttgattttcattatgcgcccattggagcttgccatgaaatatatgttcttacaaacttcataaagagtctcctaagtcccaagtttttcccttccgataattcagataatcaccaaggcaactgctgatggtatccttcatactaagaactgggacattgagccactggttcctttgccagaaaacattacaagcacaaatttgacaaggtgtgctgctcttccctccatttcctccttccactagtgatgatgtagcttttcatgtggcagtaaccatcaaatcatatgcttgtattcttgtatagcacctttttggttagtagtattctttaggagtatttcctgcagcttgatttgaattatttggatattggaaagcaaattttgttgccattgatttataactatgtaaagatgctttgctttgttcactatgaaaaaaatctcacatttttctcttaatgcttgaacatacaagtactgtaaaaactgagaacaacagcactgtgctagatgcaatatatgccacttaagaagcatcatgggcaggatcaccaaatcataattcctcccccacctccccacatagaactattaagatcaagaaattattggaataacatctgttctttgttttgttgttcaacacatgataagggtaagtgggttacttgcttaggcaggtaaaaacattgtagagtctactaagaatgcatggtagtaggcacattgacatgtcagttcagtggatgcctcggagcaccagtgcatattgtgttggagggcctagcttcttcctgaagatgcttttctggaataagctggtggggacggacttcagctggccagtactataggggcttaagcctctctaacaaacctcaaaatctacccgttagagtcttatagaggatataggctcatgccatatggtggttttaagcttacagagttcatcaaaacaacaccataaccaaacaactaatcttggtcattgagataatcagataaacttgggatttatgaaaaataccaatataccattgccattgtagcactgaggcatcgtgaagttgcaaaatgccatgcaaatatgcttgggttataaatgccatagtcatcaaaatccatgctattcatgtccatttaggagaaaggtaatatcacatatgatggtactttccacactttatcgtatttgcaagttcatgattatcttaatgatatagagctaaatttctcaatcctttttttctttggcagctctgcaaaggatttgagccccttctccttctcaacttctaggaggagccctagtagacgtgcaaaaagcaggtgggaacctgttgtagaagaaaaggttgcaaataaggtggaattgatttccaaagaatcagcaaagaccaatacctacaatagttcagaaacaactaaaagagcggtaagatctcagtatgggttcatataacatgcatgcctttcatttatgagaaatacttagctaaatactttgcagggtagaagttgggatattgggaagtttctccaatcccgtcaggctcctttaagtcaatataatcagagacctagtaaaaagaagcggattggtggtaactcaagtctaactgaaaatggaaatgtttcaagtgacagtgataaggagcaggatctgacaaaatattatgctaatgcaatcacaatagcaaattcaccagaggagaagaaacgccgggagcatagatccaagcgttttgaacgtagtcagggtgctgcatcctcaaaatctaggagctctgttccagataaggatggaacatccaatacatatgctaggagatctatgccaatgcttcttagcagaagtaatggagatgatgttagcttcgctgtggaggatttggattgggatgcactgactgtcaagggaacatgtcaggaaattgagaaaagataccttcgtcttacatcagcacctgatcctgccacagtgagaatgctctgctaatattaccttgtaaactgcctagattggaaaaacatattgttgataggaaattgtctctagatgttgttttcttccttttgctactccttgctttagttttgtttcatcataccttttcaggtaaggccagaagatgttttagagaaagctcttcatatggttgaaacatctcagaagaattatctgtataaatgtgaccaactaaaatcaattcggcaagatcttactgttcagaggattcagaacgagctgactgtcatggtagcctttcttagcccactttgtgtgttatatactgcattatactcctgttcactatgttagtccattttcacgggaaatatcatttcacaatgtatccgagaaaaataatactccctccatcccaaaatataaggcacaaccatttttttctgtctcataatataaggcgtgcatgcatgcatacattaattatcttctcctggttcttttaatttggtttattttaattcatgtaccattaagtctctcaatcacattgcttgcatgtatggatatgattcaattaaggaggtgattaaattttttcttggtctttgtgttagtagtggttgtgccttatattttgggatggatggagtagttgctatttgcactccttttcccaaatttagtaatgtgatcatgtgaatacatagttgctgtgtgctattcaatgtggacgcacatgatcatttcttatcaatttttttcttaaactgctgcttcattggcctatttgcatggttggctaggacagatattacaggacggagtagtttctaacagtttggcgtgcctcgattattctgtttgttttaatgttttgattcatgaaggaaattatttagttaatattattttggcatgccatccttttttactctattatctatctttgatttttcatgtcaacgctgttccaacttcccgccatttgtttcatcttgcctgctttttttggtagcttccatattacttgttttattctctctttttttttcaggtttatgaaactcatgcgcgcttagcacttcaatctggagatttacctgaattcaatcaggtttgcttatcttgttctgaatgtctgtccttattcctgacataagaataataaacaagtgtcatgtgctattgtagtttcattacgcacgtctactaacagccttgttagaaattacccgctctcagcggtttgagccaagttaacgtacataatactctggtgaaataaagccccccatgtccttattagtttctagttgaaagtcttgacccccccccctccctctttttttttaacagaagcatatatgtagcacatggtctatactactaccaattgcaactgccgtagaaatgcagtaaattagccatgttaaagtgttggtactttgcaaattgtgtcttttctaaaactggatgctctattcttgaattattaagttttgtttgtctagttgcctcacagaagaaagaaacctacagcctaatttttttattgtttctgctgcaactctttgcagtgccaatcgcaactgaagagattatatgcagaaggaatcaaaggctgtcatttcgaattctctgcttacaacttgttgtgtgtcatgttacactctaataacaaaagagacttgctttcttcaatggcaaggttggttatttcacatgagttggttaatatgagtccattagggttgcataatatgagcacatatgagttggttatttcatagttacatgaaccttatttgatatacatccatatctaatagcttgccaaaggaagccaagcaagacagaactgtcaaacatgctcttgcagttcattccgctgtttcatctggaaactatgttctatttttcaaattatacaagaccgcacctgacttgaattcttgtcttatgggtaaatatgatctccctctctctgtaatttgaagtgttcatctaatttcattgagatggtgtttttgctttgcaacttgcatgattggtgctgtagatctctatgttgaacggatgcgctttgaggctataaaatgcatatctaaatcatatcgcccaactttacctgtaaaatatgctgcacaagttttgggattcatggcaattgacgaagtttgtgaagctaaaagagctgatggattggaagaatgtgaagaatggttaaaagcgcatggtgctgttctttcagtagataacaataacggagaattgcagatagacacaaaggtaaaacacgcagcaggtttttgcaatgtgtttgtgttgtattggcttttgaaacactgcactacctctattgttcgacaggtttcttctacttccctatacatgccggaacctgataatgctgtttcacatggtgatgcatcacttgctgtggatgattttttggcacgaacatcataggtgatgccatgctgagcatttttatcactcatgtggcactgaacttcgaaggtatttctcgattgcatgtagcaatgcctgtagaggaatgttctgttaaatgcagggtaggaccttgaaatggatcagctgaagggggaagcacggtcccttgtcgaagagaacagaatgcacatgagcaggtcgctttctattatactcaaaacgtgctctgggcctctgaatctcagatgctgtgggatcgttggcatgttgctagctctacagccctgcagcagttccattttgacaaacaaaattctggaggcagcattaaccgaaaaaaaaaaaccctcctcgaagtatacattggcgggcattacttttgtaccgtcccagccagacgacaagtgtacatgttgagatgtagtcgtaccttcaggcttcagtgtattgtacaatttttgtttacatcggtgaccctgatgttactcatttcattgatcaactgcaaatagttaatacaaatttggaagtac</dnaseqindica>

External Link(s)

NCBI Gene:Os01g0836400, RefSeq:Os01g0836400