Os01g0839900

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Revision as of 05:09, 25 June 2012 by 127.0.0.1 (talk) (Created page with "{{JaponicaGene| GeneName = Os01g0839900| Description = Thaumatin, pathogenesis-related family protein| Version = NM_001051291.1 GI:115440952 GeneID:4327387| Length = 1001 ...")
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Gene Name

Os01g0839900

Description

Thaumatin, pathogenesis-related family protein

Version

NM_001051291.1 GI:115440952 GeneID:4327387

Length

1001 bp

Definition

Oryza sativa Japonica Group Os01g0839900, complete gene.

Source

Oryza sativa Japonica Group

 ORGANISM  Oryza sativa Japonica Group
           Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
           Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; BEP
           clade; Ehrhartoideae; Oryzeae; Oryza.
Chromosome

Chromosome 1

Location

Chromosome 1:37785742..37786742

Sequence Coding Region

37785941..37786684

Expression

GEO Profiles:Os01g0839900

Genome Context

<gbrowseImage1> name=NC_008394:37785742..37786742 source=RiceChromosome01 preset=GeneLocation </gbrowseImage1>

Gene Structure

<gbrowseImage2> name=NC_008394:37785742..37786742 source=RiceChromosome01 preset=GeneLocation </gbrowseImage2>

Coding Sequence

<cdnaseq>atggcttctgccaagctgcttctcctggtcgccacctcgctcctgagctgcggcgtcatcctcgccgactacgcgccgatgacgctgaccatcgtgaacaactgcccatacccggtgtggccaggaatccaggccaactccggccacgacgtcctcgagggcggcggcttcttcctcccggcgctctcccaccgctccttcgccgcgccggcccacccttggtccggccgcatctgggcgcgcacgggctgcactggcgccggcgcgcagctccactgcgccacgggcgactgcggcgggcggctccagtgcgcgggcctcggcggcgcggcgcccgcgacgctggcgcaggtctccctccaccacggcaacgaccagacctcctacggcgtgagcgtggtggacggcttcaacgtcgggctgtcggtgaccccgcacgagggccggggcaactgccccgtgctggcgtgccgcaagaacctgaccgagacctgccccagcgagctgcagctgcgcacgccggcggggagcgtcgtggcgtgcaagagcggctgcgaggccttccgcaccgacgagctctgctgccgcaacatgtacaacagcccgcgcacctgccgctcgtccaagtactcggagttcttcaagcgcgagtgcccgcaggccttcacctacgcgcacgacagcccgtcgctcacccacgagtgcgccgcgccgcgcgagctcaaggtcatcttctgccactag</cdnaseq>

Protein Sequence

<aaseq>MASAKLLLLVATSLLSCGVILADYAPMTLTIVNNCPYPVWPGIQ ANSGHDVLEGGGFFLPALSHRSFAAPAHPWSGRIWARTGCTGAGAQLHCATGDCGGRL QCAGLGGAAPATLAQVSLHHGNDQTSYGVSVVDGFNVGLSVTPHEGRGNCPVLACRKN LTETCPSELQLRTPAGSVVACKSGCEAFRTDELCCRNMYNSPRTCRSSKYSEFFKREC PQAFTYAHDSPSLTHECAAPRELKVIFCH</aaseq>

Gene Sequence

<dnaseqindica>59..802#accaccaccactccatcacagtctgctcattagctcgagacctggtcagctcgccgccatggcttctgccaagctgcttctcctggtcgccacctcgctcctgagctgcggcgtcatcctcgccgactacgcgccgatgacgctgaccatcgtgaacaactgcccatacccggtgtggccaggaatccaggccaactccggccacgacgtcctcgagggcggcggcttcttcctcccggcgctctcccaccgctccttcgccgcgccggcccacccttggtccggccgcatctgggcgcgcacgggctgcactggcgccggcgcgcagctccactgcgccacgggcgactgcggcgggcggctccagtgcgcgggcctcggcggcgcggcgcccgcgacgctggcgcaggtctccctccaccacggcaacgaccagacctcctacggcgtgagcgtggtggacggcttcaacgtcgggctgtcggtgaccccgcacgagggccggggcaactgccccgtgctggcgtgccgcaagaacctgaccgagacctgccccagcgagctgcagctgcgcacgccggcggggagcgtcgtggcgtgcaagagcggctgcgaggccttccgcaccgacgagctctgctgccgcaacatgtacaacagcccgcgcacctgccgctcgtccaagtactcggagttcttcaagcgcgagtgcccgcaggccttcacctacgcgcacgacagcccgtcgctcacccacgagtgcgccgcgccgcgcgagctcaaggtcatcttctgccactagaatccagcgcgccaaggcgtactcggtaggatcccttccggggtgtctgtgactgtgttctaatgttcgattagctcgcgggtttagatgctggagtcgttacttacgttcgattagcccgtaatcggtgtgctgctgcttgtgttggctgcagggatgtctgtgactgtaatggtgttactgccaggtttccagcctg</dnaseqindica>

External Link(s)

NCBI Gene:Os01g0839900, RefSeq:Os01g0839900