Os01g0842600

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Revision as of 05:10, 25 June 2012 by 127.0.0.1 (talk) (Created page with "{{JaponicaGene| GeneName = Os01g0842600| Description = Similar to AAA-metalloprotease FtsH| Version = NM_001051309.1 GI:115440988 GeneID:4327502| Length = 5416 bp| Defini...")
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Gene Name

Os01g0842600

Description

Similar to AAA-metalloprotease FtsH

Version

NM_001051309.1 GI:115440988 GeneID:4327502

Length

5416 bp

Definition

Oryza sativa Japonica Group Os01g0842600, complete gene.

Source

Oryza sativa Japonica Group

 ORGANISM  Oryza sativa Japonica Group
           Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
           Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; BEP
           clade; Ehrhartoideae; Oryzeae; Oryza.
Chromosome

Chromosome 1

Location

Chromosome 1:37938310..37943725

Sequence Coding Region

37938596..37939060,37939135..37939362,37939901..37940668,37940838..37941320,37942471..37942598
,37943127..37943195,37943276..37943480,37943593..37943655

Expression

GEO Profiles:Os01g0842600

Genome Context

<gbrowseImage1> name=NC_008394:37938310..37943725 source=RiceChromosome01 preset=GeneLocation </gbrowseImage1>

Gene Structure

<gbrowseImage2> name=NC_008394:37938310..37943725 source=RiceChromosome01 preset=GeneLocation </gbrowseImage2>

Coding Sequence

<cdnaseq>atgagcctctcctccctctcccgcgccctcgcccggtccgcgcgctcctcccggcagcgccagggttctctgctcggggggcatggcgggctccgtgcttcgtcgccgccgctgccctgcggcgagttgggttttctgcgcagctatgtgacgtcagttatcgggaatcgggcagcggtggcctccggggcagggaagggtggggactggaggttcctgcttgctagccggcagttccggcggctattctccgacaagtcgaagaaaaaccacgggaagcattcggaggaggagaataaaggtaaaggggatgagagtgacaagtccgactcaaagaagcaatccagttcaggtgatcaatggaatttcgaggagagcattaaacaattcaaggacatgattgctcctttattcctttttggcctattattgttatctgcatcagcatcttcatcagagcaggagataagcttccaagaattcaagaataagttgttggaacctggtttagttgaccacattgttgtttcaaacaagtcaattgctaaggtttacgtcaggagttcaccttcaattgatcgaattcaggatagtgatatccatataactacaagtcatcttcctgggatagagtctcctagcagctacaagtattacttcaatattggaagtgttgactcctttgaagagaagttacaagaggcccagaaagcattggagatagatccacactattatgtcccaatcacttacactactgaagcaaaatggtttgaggaagtaatgaagtatgtcccaaccgttctaattattggattaatatatttgcttgggaaaaggatacaaaatggatttactgttgggggtggtcctgggaaaggaggccgtagcattttcagtattggaaaagttcaagtgacaaaattggataaaaactccaaaaataaggtgttctttaaggatgtagctggctgtgatgaagccaaacaagaaattatggaatttgttcatttcctgaaaaatcccaagaaatatgaagaactgggagcaaaaataccaaagggtgctcttcttgttggtcccccaggcacaggaaagactctccttgctaaagctactgcaggagagtctggtgtgcccttcttgtctatttctggttcagacttcatggaaatgtttgttggtgttggaccatccagggtgcggaacttatttcaagaagctcggcagtgttcacctagtattgtattcattgatgaaattgatgcaatcggccgtgctagaggccgtggaggtttttctggtggacatgatgagcgtgaaagcacattgaaccagttacttgtagagatggatgggtttggaactacatctggtgttgttgttcttgctggtaccaataggcctgacatcctggataaggctttgctaagaccaggaagatttgatcgtcagataagtattgataaaccagacataaagggtcgtgatcaaatatttcgcatctaccttaaaaagctgaaactggacaaggaaccatcattttattcacaaagattagctgctttgacacctggatttgctggagctgacattgccaatgtttgtaatgaggcagctttaattgctgcaagaagtgagggcacactcattacaatgcaacattttgaatctgcaattgatagggttatcggaggcttggaaaagaaaaacaaggtgattagcaagttggagcggcgaactgttgcttaccatgaatctggtcatgctgttgctggatggtttttggagcatgccgagccactactgaaggtcacaattgttcctcgtggaacagctgctttaggttttgctcagtatgtgccaaatgacaatcttttgatgactaaagagcagctttttgacatgacctgcatgacactaggtggccgagctgctgaggaggtcttgattggaaagatctcgactggtgcacagaatgatctggagaaagttactaagatgacttatgcccaggttgcagtatatggcttcagcgaaaaggttggccttctttctttccctcaaagggaggatggttttgagatgagcaaaccatatagcagccagacggcatccatcattgacactgaggtgagggaatgggtcgctaaggcctatgaaaaaactgttgagcttataaaacaacataaagatcaagttgcacaaatcgccgagctgctgcttgagaaagaggttctccaccaggatgatcttgtccaggttctaggggaacgcccattcaagacactcgagccaactaattatgatcgattcaaacaaggttttcaagatgaagacagcaataggaatgctgaattgtcaaatgcagatggagcatcatcccttggagaggctgtggcatcataa</cdnaseq>

Protein Sequence

<aaseq>MSLSSLSRALARSARSSRQRQGSLLGGHGGLRASSPPLPCGELG FLRSYVTSVIGNRAAVASGAGKGGDWRFLLASRQFRRLFSDKSKKNHGKHSEEENKGK GDESDKSDSKKQSSSGDQWNFEESIKQFKDMIAPLFLFGLLLLSASASSSEQEISFQE FKNKLLEPGLVDHIVVSNKSIAKVYVRSSPSIDRIQDSDIHITTSHLPGIESPSSYKY YFNIGSVDSFEEKLQEAQKALEIDPHYYVPITYTTEAKWFEEVMKYVPTVLIIGLIYL LGKRIQNGFTVGGGPGKGGRSIFSIGKVQVTKLDKNSKNKVFFKDVAGCDEAKQEIME FVHFLKNPKKYEELGAKIPKGALLVGPPGTGKTLLAKATAGESGVPFLSISGSDFMEM FVGVGPSRVRNLFQEARQCSPSIVFIDEIDAIGRARGRGGFSGGHDERESTLNQLLVE MDGFGTTSGVVVLAGTNRPDILDKALLRPGRFDRQISIDKPDIKGRDQIFRIYLKKLK LDKEPSFYSQRLAALTPGFAGADIANVCNEAALIAARSEGTLITMQHFESAIDRVIGG LEKKNKVISKLERRTVAYHESGHAVAGWFLEHAEPLLKVTIVPRGTAALGFAQYVPND NLLMTKEQLFDMTCMTLGGRAAEEVLIGKISTGAQNDLEKVTKMTYAQVAVYGFSEKV GLLSFPQREDGFEMSKPYSSQTASIIDTEVREWVAKAYEKTVELIKQHKDQVAQIAEL LLEKEVLHQDDLVQVLGERPFKTLEPTNYDRFKQGFQDEDSNRNAELSNADGASSLGE AVAS</aaseq>

Gene Sequence

<dnaseqindica>4666..5130#4364..4591#3058..3825#2406..2888#1128..1255#531..599#246..450#71..133#gggatcaaaaccctaatacggcccgcccccgcctcgatctccgtccaatgcgctcgccgccgccgccgccatgagcctctcctccctctcccgcgccctcgcccggtccgcgcgctcctcccggcagcgccaggtgagtgcccgagccgcaccccctccccttcccctctccgattggtgtggcttcttcctgcgcgtcctcgccctaatggctcgggcggcgtgtgcggatgtcgttgccgtagggttctctgctcggggggcatggcgggctccgtgcttcgtcgccgccgctgccctgcggcgagttgggttttctgcgcagctatgtgacgtcagttatcgggaatcgggcagcggtggcctccggggcagggaagggtggggactggaggttcctgcttgctagccggcagttccggcggctattctccgacaagtcgaagaaaagtaagctttctggctggttaggtggtttttggggatatctggtgactctgttaatatttaacgttgccttttttattcagaccacgggaagcattcggaggaggagaataaaggtaaaggggatgagagtgacaagtccgactcaaagagtaagtgcttattttaacctgcattcctcgctcttgtgttggatatggtttattaaggtgttgagctttgcaaaatattttgaaagagagtagacttttacataccagtggcgacttaaccttccgagtgctgccctaaaatcatgctatatcataacttgtgatttctagttttagtatactgataatagaaaacaatgttaagaagatgatatgcagagcttttgtaagtggcaatacatgttaaacagagtggggctagttgatgttttattttattgcacaaatacccctaacagtatgtaagtatcatgtatagctgaaaatgctaatatttgagttttagtgcctcataaactgcccgctcacctttaagggagaggtactagcatgagtattgtggaatacgacaacatgagcctttagcccaaagcaagttggttgcgtacaatttgtaaagtttgatgcatccgtatatagcattatactgcaaaccacatacttaatgtggtcatttctggtgtgcagagcaatccagttcaggtgatcaatggaatttcgaggagagcattaaacaattcaaggacatgattgctcctttattcctttttggcctattattgttatctgcatcagcatcttcatcagagcaggaggtctgttcctactgaaaaaccgactgttaaacatgagcaacagtagtggcttgtgtgtttcattgtcattttacctgttcacacttgtggatagaagatagctgttatcaaaatccccatttactttactgaaggtcctcgcctttggtcagccttataaatttcagaaaagaatcattccaattctgtgtggtatataaattttgtcagtgttcattttgctgcagtccaattagagaggtgatatgaggttatatataaggttactttttttatcttgaaaaaaatatttggtggtttcgctggcctagcaaagtggtaaggaaaaaaaaattatgctttcacatgtagtccttagtttatgttttatttgtacataacacaattgatgataattaattagctgcccccctccattcctaaataattttcactatactattcatatcctaagtttgacttctcatattttatcaagaaacttgtaaatatttaaaagtatactccctccatccctagatgtaagggattctagctatgaatctggacacgtgcatgtccagatccatatatttatagccagaattccttaaatttagagacagagggagtactatattatgaaattatattacatgctaaatatgatcatactgttttcattcatcaaaacatgatatatatatatatttttaaaaaagttgtggtcaaagttgtaacagcaccggttaatggtgacaagcaaatgtaaacagagggagtatgactgaagttatggttgactgaaaagatttaaatcacatagttgtactgatggagatggtatgcttttgctcgagagcattaatgtgattatttggtgcagcatgtgaccctagctacagtacttcattactgatggcatatcatatcctatcctaagagtttgatatagggcattttagcatgagcttcgtatgttgttagtgccatgttggtatgaaatgcaatatggttggtattctacatcctattaatcatctaatcctgtataactatatcatatatccacacttcagttccctaccagtttctttttctgtgcgacacatacattcatttcctagtccattataacttgtgatacccacttaattgtaattcttttcagataagcttccaagaattcaagaataagttgttggaacctggtttagttgaccacattgttgtttcaaacaagtcaattgctaaggtttacgtcaggagttcaccttcaattgatcgaattcaggatagtgatatccatataactacaagtcatcttcctgggatagagtctcctagcagctacaagtattacttcaatattggaagtgttgactcctttgaagagaagttacaagaggcccagaaagcattggagatagatccacactattatgtcccaatcacttacactactgaagcaaaatggtttgaggaagtaatgaagtatgtcccaaccgttctaattattggattaatatatttgcttgggaaaaggatacaaaatggatttactgttgggggtggtcctgggaaaggaggccgtagcattttcagtattggaaaagttcaagtgacaaaattggataaaaactccaaaaataaggttagtttttatttgctatttccatctcttgctattttgaacaaaacatgaaattcatatccttttttgtaaatgtttgttctgtagctttattcaccattgacaaagaacatacaataacatattcatataattctactgaagtaaccttgtttcttgtgtgctacaggtgttctttaaggatgtagctggctgtgatgaagccaaacaagaaattatggaatttgttcatttcctgaaaaatcccaagaaatatgaagaactgggagcaaaaataccaaagggtgctcttcttgttggtcccccaggcacaggaaagactctccttgctaaagctactgcaggagagtctggtgtgcccttcttgtctatttctggttcagacttcatggaaatgtttgttggtgttggaccatccagggtgcggaacttatttcaagaagctcggcagtgttcacctagtattgtattcattgatgaaattgatgcaatcggccgtgctagaggccgtggaggtttttctggtggacatgatgagcgtgaaagcacattgaaccagttacttgtagagatggatgggtttggaactacatctggtgttgttgttcttgctggtaccaataggcctgacatcctggataaggctttgctaagaccaggaagatttgatcgtcagataagtattgataaaccagacataaagggtcgtgatcaaatatttcgcatctaccttaaaaagctgaaactggacaaggaaccatcattttattcacaaagattagctgctttgacacctggatttgctggagctgacattgccaatgtttgtaatgaggcagctttaattgctgcaagaagtgagggcacactcattacaatgcaacattttgaatctgcaattgatagggttatcggaggcttggaaaagaaaaacaaggtattttttacggtgccaattttcatttgcctctactagttgatttatcaaattttacataagaattttgcaacctggctgccaaactatccagtatccacaatgctgctaggctacgagtacataaataaacaaaattgttgcaaatactttgttgttgggctgccatactttttgttttatcaattcaggaggtagcaaattttattatatatatgttaaacaatatcggcttggtcaatgttgtcaattctatatgagaactgcttataactgttttttcttaaattgcaaataattgctatattttattcttgatgtgactgaggcgcactttgaaaccttcacatttgctttgagagcctaggttggtttgtacaattttaaaagtgatttcagtgttctctttgttacttgttacagcagaaatcattgcataattaagtgctgttgcattggatgtaaagtattatatggggcatgaacaattggacattcatgtgtagcggttatgtacttatcaatctgtccaccacaggtgattagcaagttggagcggcgaactgttgcttaccatgaatctggtcatgctgttgctggatggtttttggagcatgccgagccactactgaaggtcacaattgttcctcgtggaacagctgctttaggttttgctcagtatgtgccaaatgacaatcttttgatgactaaagagcagctttttgacatgacctgcatgacactaggtggccgagctgctgaggaggtacacaacattttctaacttatcagtagagtttattcttaagcaaatgacttaattatgtgattttttttcaggtcttgattggaaagatctcgactggtgcacagaatgatctggagaaagttactaagatgacttatgcccaggttgcagtatatggcttcagcgaaaaggttggccttctttctttccctcaaagggaggatggttttgagatgagcaaaccatatagcagccagacggcatccatcattgacactgaggtgagggaatgggtcgctaaggcctatgaaaaaactgttgagcttataaaacaacataaagatcaagttgcacaaatcgccgagctgctgcttgagaaagaggttctccaccaggatgatcttgtccaggttctaggggaacgcccattcaagacactcgagccaactaattatgatcgattcaaacaaggttttcaagatgaagacagcaataggaatgctgaattgtcaaatgcagatggagcatcatcccttggagaggctgtggcatcataacttggacagaattgtaggtgtatatcgcatgtttgctgaacagattattaatatttctgaggcatgagaagctgtataaaggtgttcatatgccaagttatggctattttgctagattgcgatttccacttcgcgcaggcgttcaatctgttgaatctgccgataactagtggttcagttcatgaattttcagaaatttacttgacgatttgatctctgttcctgtaaggctgtaacctagcactagggcatgagaagttgtataaaggtgttcgtggtttttctg</dnaseqindica>

External Link(s)

NCBI Gene:Os01g0842600, RefSeq:Os01g0842600