Os01g0844800

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Revision as of 05:10, 25 June 2012 by 127.0.0.1 (talk) (Created page with "{{JaponicaGene| GeneName = Os01g0844800| Description = Similar to Pumilio RBD (Fragment)| Version = NM_001051317.1 GI:115441004 GeneID:4327511| Length = 7428 bp| Definiti...")
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Gene Name

Os01g0844800

Description

Similar to Pumilio RBD (Fragment)

Version

NM_001051317.1 GI:115441004 GeneID:4327511

Length

7428 bp

Definition

Oryza sativa Japonica Group Os01g0844800, complete gene.

Source

Oryza sativa Japonica Group

 ORGANISM  Oryza sativa Japonica Group
           Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
           Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; BEP
           clade; Ehrhartoideae; Oryzeae; Oryza.
Chromosome

Chromosome 1

Location

Chromosome 1:38034800..38042227

Sequence Coding Region

38035268..38035927,38036810..38038350,38038937..38039078,38039210..38039317,38039402..38039614
,38039701..38039811,38040644..38040838,38041462..38041636,38041777..38041814

Expression

GEO Profiles:Os01g0844800

Genome Context

<gbrowseImage1> name=NC_008394:38034800..38042227 source=RiceChromosome01 preset=GeneLocation </gbrowseImage1>

Gene Structure

<gbrowseImage2> name=NC_008394:38034800..38042227 source=RiceChromosome01 preset=GeneLocation </gbrowseImage2>

Coding Sequence

<cdnaseq>atgatcagcgctagcgctgtggcgatgcgtggggagatgggtggcggtggcggcggcggcgatgagggagagctggaggacgagcttgatgccctcctcggaaccggtggcgctggcgcgcgtcggcgaggtgaggacgcgggagagagggaacgggagctcaacatgttcaggagcgggtcggcgccgccgactatagagggttcgctgaacgccatcagcgggctgctccgcggcggtggagaggcagccgttaccgttgcagcgattcccgacgctgagacgttgaacgggcatggtggtctcctctcggaggatgagctccgggctgacccggcctatctatcctactactactcgcatggcaatctgaacccaaggttgccaccgccggtgctatccaaggaggactggcggtccacacagagactgaaggcgggggtggttggaggaattggtgacggaaggaaggtatcgccggaggagactggacatgagccgacggtggggaggcctgtgttctcgcagaatgttggttttgatcaggaggaggctgcaaggaatgatgtaggtggtgctgcagagtgggtggatggtggaggtgatgggctgattggtttgtcgcttgggcggcagcgcagctttgctgatatccttcaggacaatattggccgcagaactcctgcttcagagcatccctctcgtgcagttagtcgcaattcttttcttgacaatcaggaactactaaattctgctgatagccagtactccatgcataatgatattctggaagcacaacgtgctgtcggaaatgtgcaaaatgtcagtggccttcccagtattaatgcatccgcatctcaaacttttgcatctgttctgggttcatctatttcaaggaatgccacaccagattctcattatgtccctagggtccctagtcctggccttccacctgtcggtgttaggattaattctaatgagaagaagctgaattgctcatcatcattcaacactgcatcttcaaaagcagttgagcctgatgatattttagctgcaatatcaaacatgaacatgtcaaaagatggtactttgggtgacagtaacagcattagtcaatcaaagttccaaagtgagataagtgaccaccagaatatttctcttgatccaaaagctctccaagttaataagaatcagcattcgctgatgttggaagctgatactgattatttgggtataccaccaatttcacaaccttcaaatccttccttttctgatattaacaagaatgtctcaggtttagcgaacataagaaattctactaacacacgtatagatggacacgcggagatgcaaaggtcttctactttgtctactcggtcatatcagaagtccccaacatcttccaatgcgagcccaggtggttctcctgctcaacaccagaatattgacaatataaattcagcctttttgaactatggactcggtgggtatccactcagcccgggtttgccttctatgatgatgaactgtatgggctctggcaatatgcctcctttgttcgaaagtgcagctgctgcatctgctatagcttcattcggggcagattcgagaaaccttggtaacaatattttgtcgtcacctaccttaagtctatctgatgtgcataaccttggcagaactggtaaccaaacagccacaggtcttttgtcgcctctttctgatccattttatgtccagtacttgaaggcaactcaatatgcagcacaaggaactgccaactgcagtgatccttccttggaaagaggtttcatgggtagtcaatatggtgatttaactgctgttcagaaagcttatattgaagctttgcttcagcagcagaaacaatatggaatgccacttggtaagtcaaccacgtcaaaccatggctattatggcaatttggcttttggcatgggcatggcataccctggaagccctttgggaagtcctgttgcttctccatctggtcctggcagtccacttagactcagtgagcggaatatgagatttccttctaacttgagaaacttgggtggctggaattctgatccaagtggctatatgaatgataacttcccatcttcactattggatgaattcaaaagtaataaggccagaagttttgaacttgctgagattgccagtcatgtggttgagttcagcgctgaccaatacggaagccgtttcatacagcaaaaacttgaaaccgcaacagttgaggaaaaagacatggtttttaaggagatcatgcctcaggctctctcgttgatgaccgatgtatttgggaactacgtggtgcagaagttctttgagcacgggagtgcagcacagcgtagggagctggctgatcaactatttggacatgtgttagctctcagccttcagatgtatggatgccgagttatccaaaaggcaatagaagtggttgacctggaccagaagacaaaaatggttactgagcttgatggccatatcatgagatgcgtgcgtgatcaaaatggaaaccatgttatccaaaaatgtattgaatgtgtaccggaagattcgattcagtttatcatctcaacattctatggtcaagttgttccattatccactcatccctatggctgcagagtcatacagagagtactggagcattgcactgatccaaaaacacaggaaatagtcatggatgaaatattgcaatctgtgtgcatgttggcacaagatcaatatggaaattatgttgttcagcatgttttggagcacgggaagcctcatgagcgatctgtcattattgaaaaactagctgggcagatcattcagatgagccaacagaaatttgcctcaaatgttgttgagaagtgtttaacatttggcggacctgcagagcgggaagttcttataaatgaaatgctcggaactactgacgagaatgagcctcttcaggccatgatgaaggatcagtttggtaactatgttgtacagaaagtactggagacttgtgatgatcagcagcgtgagttgatcctgtcacgagtaaaggttcatttaagtgcactgaagaaatatacatatgggaagcacatagttgcccgggtagaaaaacttgttgctgccggtgagaggaggattgggcttcaggcacaatatccttcataa</cdnaseq>

Protein Sequence

<aaseq>MISASAVAMRGEMGGGGGGGDEGELEDELDALLGTGGAGARRRG EDAGERERELNMFRSGSAPPTIEGSLNAISGLLRGGGEAAVTVAAIPDAETLNGHGGL LSEDELRADPAYLSYYYSHGNLNPRLPPPVLSKEDWRSTQRLKAGVVGGIGDGRKVSP EETGHEPTVGRPVFSQNVGFDQEEAARNDVGGAAEWVDGGGDGLIGLSLGRQRSFADI LQDNIGRRTPASEHPSRAVSRNSFLDNQELLNSADSQYSMHNDILEAQRAVGNVQNVS GLPSINASASQTFASVLGSSISRNATPDSHYVPRVPSPGLPPVGVRINSNEKKLNCSS SFNTASSKAVEPDDILAAISNMNMSKDGTLGDSNSISQSKFQSEISDHQNISLDPKAL QVNKNQHSLMLEADTDYLGIPPISQPSNPSFSDINKNVSGLANIRNSTNTRIDGHAEM QRSSTLSTRSYQKSPTSSNASPGGSPAQHQNIDNINSAFLNYGLGGYPLSPGLPSMMM NCMGSGNMPPLFESAAAASAIASFGADSRNLGNNILSSPTLSLSDVHNLGRTGNQTAT GLLSPLSDPFYVQYLKATQYAAQGTANCSDPSLERGFMGSQYGDLTAVQKAYIEALLQ QQKQYGMPLGKSTTSNHGYYGNLAFGMGMAYPGSPLGSPVASPSGPGSPLRLSERNMR FPSNLRNLGGWNSDPSGYMNDNFPSSLLDEFKSNKARSFELAEIASHVVEFSADQYGS RFIQQKLETATVEEKDMVFKEIMPQALSLMTDVFGNYVVQKFFEHGSAAQRRELADQL FGHVLALSLQMYGCRVIQKAIEVVDLDQKTKMVTELDGHIMRCVRDQNGNHVIQKCIE CVPEDSIQFIISTFYGQVVPLSTHPYGCRVIQRVLEHCTDPKTQEIVMDEILQSVCML AQDQYGNYVVQHVLEHGKPHERSVIIEKLAGQIIQMSQQKFASNVVEKCLTFGGPAER EVLINEMLGTTDENEPLQAMMKDQFGNYVVQKVLETCDDQQRELILSRVKVHLSALKK YTYGKHIVARVEKLVAAGERRIGLQAQYPS</aaseq>

Gene Sequence

<dnaseqindica>469..1128#2011..3551#4138..4279#4411..4518#4603..4815#4902..5012#5845..6039#6663..6837#6978..7015#agtcgggttcccccctccggactgctgcttaccgtgtgctctcccccattcccccactccccccttccgcgagcaggttcgaggtttcggtggccgaaaatggcggaatcgccggctgatcggagcccaatctgagcctggacgcgcagataccgcgccttcctggcccgatctctcgaaaccccttgaaaaatccgagccgaaatggcggccaccgccccgatcgggcttgcgaagcgcgattcggtggtgctctggcctgggggtctcgcgagctgcacttattgtgactgaaagtgtggtcggctctttgctggttggtgtgggcttgggtcgcggagagagtaaaggtgcgtgtgtgttcgccgcgagggtgcgattcttcctacgcgcttgccatttttggggggattttatggcgtgttcattttgtgcgattttggtgatttgtggtgtagggtttgtggcatgatcagcgctagcgctgtggcgatgcgtggggagatgggtggcggtggcggcggcggcgatgagggagagctggaggacgagcttgatgccctcctcggaaccggtggcgctggcgcgcgtcggcgaggtgaggacgcgggagagagggaacgggagctcaacatgttcaggagcgggtcggcgccgccgactatagagggttcgctgaacgccatcagcgggctgctccgcggcggtggagaggcagccgttaccgttgcagcgattcccgacgctgagacgttgaacgggcatggtggtctcctctcggaggatgagctccgggctgacccggcctatctatcctactactactcgcatggcaatctgaacccaaggttgccaccgccggtgctatccaaggaggactggcggtccacacagagactgaaggcgggggtggttggaggaattggtgacggaaggaaggtatcgccggaggagactggacatgagccgacggtggggaggcctgtgttctcgcagaatgttggttttgatcaggaggaggctgcaaggaatgatgtaggtggtgctgcagagtgggtggatggtggaggtgatgggctgattggtttgtcgcttgggcggcagcgcagctttgctgatatccttcaggtttgtctcgattaccagttgtgacctggtggataattctttgtatgacgttgctgctgtgagctactggtggtaattattgtgcatgttaatattttactggcttatgttggaatgctgaatttagtcaacagcaaacacacaatggattatcacggatagaattttgcagtttgttgcttcatgtttttgttagcactgggttttggatccactttgtttggcaggctattcccttgtttcttcatgttatccatttttaagttggatatgtcatgggaaaaagatgcagctgtcccataagaagttttgaatcaatgaattgttccagctcgagtataattattggcaaagccactggatgaactttaagccagttgttggaatcctgtaatgtcagctcttgaagtcttgtgagaacactgacttcatttctgatcttcctgatcatccgatagtttttatgtagtttttagtatacccgaacaacattgtgaaattatgcacctaataaagcatgccattgaaattacacatttctaaagagggaagttctatacactcatcagtgtcatgaatgctattttaccttttaatacttttatcttttcgtcatttaatagtgcagtaaatttgtgtttagtttctgctgacttcggtgaattgcatgtttgattgaggagtcatcagacatcaattggtttgatctgtcatgggttcaaaacttccaatagcttggatttattttattctattgtctttggacataattgatcccttgtaacgtagctagcattttctatctttgatagatagattactttgcaattacttctcaagctctatggtttttataaccctagagtatttttctcgttgcaggacaatattggccgcagaactcctgcttcagagcatccctctcgtgcagttagtcgcaattcttttcttgacaatcaggaactactaaattctgctgatagccagtactccatgcataatgatattctggaagcacaacgtgctgtcggaaatgtgcaaaatgtcagtggccttcccagtattaatgcatccgcatctcaaacttttgcatctgttctgggttcatctatttcaaggaatgccacaccagattctcattatgtccctagggtccctagtcctggccttccacctgtcggtgttaggattaattctaatgagaagaagctgaattgctcatcatcattcaacactgcatcttcaaaagcagttgagcctgatgatattttagctgcaatatcaaacatgaacatgtcaaaagatggtactttgggtgacagtaacagcattagtcaatcaaagttccaaagtgagataagtgaccaccagaatatttctcttgatccaaaagctctccaagttaataagaatcagcattcgctgatgttggaagctgatactgattatttgggtataccaccaatttcacaaccttcaaatccttccttttctgatattaacaagaatgtctcaggtttagcgaacataagaaattctactaacacacgtatagatggacacgcggagatgcaaaggtcttctactttgtctactcggtcatatcagaagtccccaacatcttccaatgcgagcccaggtggttctcctgctcaacaccagaatattgacaatataaattcagcctttttgaactatggactcggtgggtatccactcagcccgggtttgccttctatgatgatgaactgtatgggctctggcaatatgcctcctttgttcgaaagtgcagctgctgcatctgctatagcttcattcggggcagattcgagaaaccttggtaacaatattttgtcgtcacctaccttaagtctatctgatgtgcataaccttggcagaactggtaaccaaacagccacaggtcttttgtcgcctctttctgatccattttatgtccagtacttgaaggcaactcaatatgcagcacaaggaactgccaactgcagtgatccttccttggaaagaggtttcatgggtagtcaatatggtgatttaactgctgttcagaaagcttatattgaagctttgcttcagcagcagaaacaatatggaatgccacttggtaagtcaaccacgtcaaaccatggctattatggcaatttggcttttggcatgggcatggcataccctggaagccctttgggaagtcctgttgcttctccatctggtcctggcagtccacttagactcagtgagcggaatatgagatttccttctaacttgagaaacttgggtggctggaattctgatccaagtggctatatgaatgataacttcccatcttcactattggatgaattcaaaagtaataaggccagaagttttgaacttgctgagattgccagtcatgtggttgagttcaggtatacctagtcgtgtacttctgcaatactgatatgagtttgaatcatactaaaacccatgaaaaaacatccaattacaaataggatgaaatggtctccaaaacacaactgatcactaatttttattgcaacatgtttataattggtaacttagaatatttggacagcaccttttatggcaaataaagatgcatgtataatgtccaattgttcattgagatattatcagctaaaatttttagtaactttttactgcatgcgtctgaaagtcactttttttttactgagggagtatcatcaaagcattctgttatagtatctatcaaaacattatattattttattctcgtccactaattaacttgtcaacaaaaggtgaaaaatggaactgcatcttgtttttccatggtctgttgctcaaatgtaatgcacataactagtcattcaagcttgcagtcatcagagcatctagtttgtgtaccactgcttcactgataaataatgattgtcgactgactaatcctttttagttattgatgcattctaactctttgagctggttgtgatgttcactttgattatgcagcgctgaccaatacggaagccgtttcatacagcaaaaacttgaaaccgcaacagttgaggaaaaagacatggtttttaaggagatcatgcctcaggctctctcgttgatgaccgatgtatttgggaactacgtggtgcagaaggttttttttttttctgaaacttagtggtgcttctcattagggagctgggccgaccattttttttctcatagtactttgtcttttaaggtttgtttagcagcgtcatgacttaacctgtgttttctacatagttctttgagcacgggagtgcagcacagcgtagggagctggctgatcaactatttggacatgtgttagctctcagccttcagatgtatggatgccgagttatccaaaaggtactgcatggcttggctctgtttcttttttgtgaaaaaaaatattcttatctttcaatgatatttatattcacattactgaaggcaatagaagtggttgacctggaccagaagacaaaaatggttactgagcttgatggccatatcatgagatgcgtgcgtgatcaaaatggaaaccatgttatccaaaaatgtattgaatgtgtaccggaagattcgattcagtttatcatctcaacattctatggtcaagttgttccattatccactcatccctatggctgcagagtcatacaggttcaccattgagttcttacatttatatgtggttcttctgtctctaatattatcttgtgtaaactcacaatttcttttgtattcagagagtactggagcattgcactgatccaaaaacacaggaaatagtcatggatgaaatattgcaatctgtgtgcatgttggcacaagatcaatatggaaattatgttgttcaggtttgtatcctctggaactattttagtccatactactttttggctttgatgtagcattctagtgttcttttctactctgcaagacttaatggtcacggacttgacattttttgctttagtggcttgtatgaaaaacggacatcgatcgtttcagatgtatttaatatttatgactttgttttgcttctacagtgaggtcttatttttcttcaaggaatagaaacatgacttaagagctgggtttgcaacaccagttttgaacttctggaatgtatgagttatgcaattattcctctgtgcttgtctaaaatgatttcacaatcagttataatagatttatgctatccacactgaacaggacaaggattctgaactttatacattcaaataggttgcctgtgctgatcattttcattggatactgagttgcacggtgtagggtctaacatgtactgcaatgattatgcctaatcacatttctgcatttcatgtcactttatttacatgagttagaattagggatgaaaaatgtgatggaaatttctaaccgagtaccgtttctgtaaaagtggtaccttttccaattctagccatatataaaattttattttattttctagtttctgtcaacgtcatattgatttcgctactaaaatagttaaattgataaatatagaaaattcctgatcaactgagaattgtttctgtagagatgatattgtttatgaccgtttttcatccctaattagaatcaattggtcatccatattactctaataccttcttttaagtgatcatatgtattgatgacatcccatttacaattgcgcagcatgttttggagcacgggaagcctcatgagcgatctgtcattattgaaaaactagctgggcagatcattcagatgagccaacagaaatttgcctcaaatgttgttgagaagtgtttaacatttggcggacctgcagagcgggaagttcttataaatgaaatgctcggaactactgacgagaatgagcctcttcaggttttcattatgatatttgtgttttattggtgtccaattatctcatggattagagcttcatatttttctgggggcagtagggcaattcaatgcgccttgaaataatttttttttaatttaacatggttttttaggcaattatttatgagataccatgttaggctcggtactgcattgtgaaattgtgattaccatatcttctcgcacttggactcgcatggcaaaacttttattcaccgtagcactttgtcaagatttccaaaaaagatatcaagcttttctagaaagctatgttaaactcatttgtcaaaaacatggcgtgctggattgatcttgaacgtgcaaagcttactgaagtattaagctgaattgctgaagaactgtgttggtgtaactgacctcatataagatgtgaattactttctgtgtggtgttatttttccgatggtttagcgttttgcagattttagtcagatttcatatttactaaatcatagacttgcctttgctgagcttttcttttccccccggaaaagttgcattcaacattctgatctctctgtttttttgtttttgtttttgttttgtttttgtgttttttttttgaaaaataacacttgcaggccatgatgaaggatcagtttggtaactatgttgtacagaaagtactggagacttgtgatgatcagcagcgtgagttgatcctgtcacgagtaaaggttcatttaagtgcactgaagaaatatacatatgggaagcacatagttgcccgggtagaaaaacttgttgctgccggtggtaagcttttgtggacatcttcactgaaaaattattgaaataattttgtcttgaaaccttggtatttttagcctccctgtgttgtctggttatatttatcctttttaacacagttttcttttttcaaaatttaaatgcagagaggaggattgggcttcaggcacaatatccttcataatggcatgaaaatgacaatgtacagctaaccatggctagccagatctaccctgtgtctcctgctttgggctgctacaagccaactttaaaaataaacgtgttgtactaagaagattgtacattttgtagtttttgcttatagtcatgtcaggggtgaggctcagagtttatttacctgatgacgctgcagagaagataggcgttttgtataagtcggttaggtgtaaaaagaggaagaaagtctatattttgcgatgagactgtacaaatctgcgatcctgagagagctaccagctgttcctgtttaggataagattttaatgatctcccatgtttatcactgatgaatgtactcaatactaatgtaattgttccagcttctgaaggcatgtgccttttacaaccttgaatcct</dnaseqindica>

External Link(s)

NCBI Gene:Os01g0844800, RefSeq:Os01g0844800