Os01g0846500

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Revision as of 05:10, 25 June 2012 by 127.0.0.1 (talk) (Created page with "{{JaponicaGene| GeneName = Os01g0846500| Description = PAP/25A core domain containing protein| Version = NM_001051325.1 GI:115441020 GeneID:4327467| Length = 5709 bp| Def...")
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Gene Name

Os01g0846500

Description

PAP/25A core domain containing protein

Version

NM_001051325.1 GI:115441020 GeneID:4327467

Length

5709 bp

Definition

Oryza sativa Japonica Group Os01g0846500, complete gene.

Source

Oryza sativa Japonica Group

 ORGANISM  Oryza sativa Japonica Group
           Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
           Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; BEP
           clade; Ehrhartoideae; Oryzeae; Oryza.
Chromosome

Chromosome 1

Location

Chromosome 1:38115587..38121295

Sequence Coding Region

38116928..38117081,38118369..38118530,38118867..38119045,38119120..38119215,38119307..38119373
,38119469..38119602,38120182..38120289,38120394..38120639

Expression

GEO Profiles:Os01g0846500

Genome Context

<gbrowseImage1> name=NC_008394:38115587..38121295 source=RiceChromosome01 preset=GeneLocation </gbrowseImage1>

Gene Structure

<gbrowseImage2> name=NC_008394:38115587..38121295 source=RiceChromosome01 preset=GeneLocation </gbrowseImage2>

Coding Sequence

<cdnaseq>atgtcgatttggcgtgtccctaattatgatgtgttggagaagtgtacagaagatatcctctctctaatcaaaccagtggagggtgaccgaaacaaacgaatatatgcaattcaggagctggcagatacaatctattcagctggggccttgagaggtgcttctgtaaaaccttttggatccttcgtatcacaactttatgcaaaatcaggtgatttggatgtgtcagttgagctgttcaatgccttgaatctccctataagtaagagaaagaagcaagataccctgagagaagtaaggagagctttgcaaaagcgaggtattgctagacatatggagttcattcctaatgcaagagttccagtccttcagtatgtgagcaaccaatatggtatttcctgtgatatatccattagcaattaccctggtcgaattaaatcgaaaatcttctactggatcaatactttggatgatcgctttggtgatatggttttattggtcaaggaatgggccaaagctcaaaacattaatgatccaaaaaatggaaccctgaattcctattcactttgtctacttgttctctttcattttcagacatgtgaacctgcaatattaccaccgctgaaggagatttatgaagggaacatcatggaggacatttcagggagggcgtactataatgagaaacatcttgatgaggtttgctccataaatatagaaagattccggcgccaaaatatggggcaaagaaatcagagctctctttctcatctacttgcatcattctttcacaagtttttccgcatcgatgccctttcggataaggttatatcgacttacactggtcggttggagagaatccaggacaatccaagatggatggacaagtcatacagcttgtttgttgaagatccatttgagaaacctgataatgctgctagagcagtcggttcctttgagttccaagatattgtcaatgccttcagcaacgcgagcaataagtttgtttctgatgcgcatgcgcttactgaccgaaatggattattgtcactgctttgcacacctgatgttggatcaaaacttggtggaagagccagtgccagccgttatacaaataccttagtgagtcctcatgacagatttttatga</cdnaseq>

Protein Sequence

<aaseq>MSIWRVPNYDVLEKCTEDILSLIKPVEGDRNKRIYAIQELADTI YSAGALRGASVKPFGSFVSQLYAKSGDLDVSVELFNALNLPISKRKKQDTLREVRRAL QKRGIARHMEFIPNARVPVLQYVSNQYGISCDISISNYPGRIKSKIFYWINTLDDRFG DMVLLVKEWAKAQNINDPKNGTLNSYSLCLLVLFHFQTCEPAILPPLKEIYEGNIMED ISGRAYYNEKHLDEVCSINIERFRRQNMGQRNQSSLSHLLASFFHKFFRIDALSDKVI STYTGRLERIQDNPRWMDKSYSLFVEDPFEKPDNAARAVGSFEFQDIVNAFSNASNKF VSDAHALTDRNGLLSLLCTPDVGSKLGGRASASRYTNTLVSPHDRFL</aaseq>

Gene Sequence

<dnaseqindica>1342..1495#2783..2944#3281..3459#3534..3629#3721..3787#3883..4016#4596..4703#4808..5053#actttcgccaatcgccatggtgcaagccgcctcaacctcctcgcgctttctccgcacaacccgtctccacggctcctccacctccaccacgccagcggagcccgcagcctccgcgtagccggcggcggctcctcctcctctcatcgcgctatctctctctctcggtaaacccctggcctcggttagtatctgaagtggatttctcgcttggtctactggcggggttcgctcgatactcctcctcgagttagggtttggcgaatacgaccaaccccgcggatcgcggttggatggcgactagagcggccgcgctgctctgagaatgcaatgtacctttcaagggttcggtattttagttccttgcttgataattgctactactgcgacaatctcgcggttcgtttgcgaagaaatataaagagggtgccttgctgtggctgtgcacttctctctccttctttgttttcacccgaaagttgtgattttggtgtggggttttgatgtagagaaattgatgagtaccacgggtattgccagccaaatattaattgcggaatgtggggaatggggaaagggtgttgccttcgacgtggattcgcctgctgcgacacataagcatgcatatattcgtagagtggagcggaattctgctagcattctgtagttacccagttacgttaactactgtagtgctaatgttagagttaaatgatttatatgatgaagtgatgaagtatacttttggcctgccgacttcgtctggggtttaatttacacaaaacttcaataccttgtaaactacacacccaaatatcatgcatgcaaatcacatcctaggggtggtattgcgggtgttttggttgatgtggcatgcaggtgaacgtgggggcatgatgatttagggaaagaaaattatgtgggcctttttctctttcctagatggggtgtggtatgggtgggagtactgccatgtgttaaagaaattgatgatgtggtagccacatgacccaatggccaacacctctagtaacctctttgggtgtattctgcgctggaaactggtggagggatgaaaatatattaaattgcagggtgtacattaaactagagcaaagttaagaaacaattgtagggtgtacgtaggtcgttgcactgttggtttggacttatggagcaaatattttacaatttacattagaaaaccaggacaaccattattcttgtaactgtaatgggtttgaatgcggttatatctggttatggtgcttagcgacgccactgtgtacccatataatctcttttgatcatacgtctatatcatttgttgcccaggatttcaggatgtcgatttggcgtgtccctaattatgatgtgttggagaagtgtacagaagatatcctctctctaatcaaaccagtggagggtgaccgaaacaaacgaatatatgcaattcaggagctggcagatacaatctattcagctggggccttgagaggtaactcacacctaaagttaccacataacccctgtattatttgaaaatcttccgttgggttccttgtatttattgacggtatggtgttgtgatgtttctacatcaagcttggttagacttatctatgatcttgaagagaaaatgtgttttccactttattgctgtgaatgctagcttgggcatggatttctgatagatctctgaaagaaaagacccagtcttataggtgtaaggtgcctctgcggtgcctatcgtatttcttgttatattcataaggaaccttaagttttaaagttatcatcacactttgtctgggcaatagtttgaaaatacaatgagtgacatatttatgcaatccatagtacttaaaagtgatgtgtttgttttgtgatcgatgctagaaaatggtcttcatgctgcgattgctgtatggcaatgggaactctacggcagacccatgaggttgctagcaggcaactgttgacctatgacagttcacagtacacagtaaccgttaaccaacaatttgtcatatcatgcctgacaaatgacaatcacgataagcttgtgttgctagaattaagggtgggcataattacctgaaaccaaagaaccaatccaaactaactgagaccaaatacttatgtcagagtttctaactaaccgaatttaatttggttataggccttggttaaccgaattgaccgaaatatagttaataagcgcaaaatcaacctgttaagcctattaagtatcatgtttgaacagttgaattttgatgttaagttgcaagtgctatctttgtgttctatatcatttgttgtttattttgtgactttttactgtcaaacatgtcctgaaactggggaattgctgccaaattttttactaccgaaacatgtcctgaaattgatcaatcagttcggtcatgacctaggaccgaaccaaaatgaccaaaaccaaatagcttggcctttatgattttgcattgaatttcggtcttgattttcggatggccaaaattcgagaaaaccaaagaatcaatccgaattaattgttcaaaccgaatggttacccatagccagaatggagctgctcaaatgtcacataatgtttttactggattttttttttggttacattctcttgttatacaatggatagtgtcttcctcaatgcatatattatttatgaagtttgcatgttggaaaagggtaactgttagagaagtcagcagtgcaattattttagtgtttctttttctgagttcttaactttcctttataggtgcttctgtaaaaccttttggatccttcgtatcacaactttatgcaaaatcaggtgatttggatgtgtcagttgagctgttcaatgccttgaatctccctataagtaagagaaagaagcaagataccctgagagaagtaaggagagctttgcaaaagcgaggtaaactttcttttcgattaatgaaaacagctttaaccgaaatgatagaagttttggttgtgtgttctttgtgatcaaacaaatagtcactatatgcatatacatgcaccaaggaaagcaataagtgggctttgcgcgtctttgatgcagcggccaggttatccattatctaaaaaaaaaaaggaaagcaatatatcttgtgagaggtgaagtcactgtaatgaataagttttgatcaagctattcacgatcttctttttgttccgtacttcattcaatgcaaccctttttgttgaatttacaggatattcttatctgttttcattccttatttaggtattgctagacatatggagttcattcctaatgcaagagttccagtccttcagtatgtgagcaaccaatatggtatttcctgtgatatatccattagcaattaccctggtcgaattaaatcgaaaatcttctactggatcaatactttggatgatcgctttggtgatatggttttattggtaagctctgtgtaaccaagagaattctctttttgctacaatcttcctttttgttaagccatgttttttggcaggtcaaggaatgggccaaagctcaaaacattaatgatccaaaaaatggaaccctgaattcctattcactttgtctacttgttctctttcattttcaggtgttatttcttactttacaagttacctctatttcttatttattgttccattaaagttatctatatgcgttctttattctgagccttccagacatgtgaacctgcaatattaccaccgctgaaggagatttatgaagggaacatcatggaggacatttcagataagatttcattatgggaatatggcttacctgtgatggatagtgactatctatttgtcagtgccttgctgtttaactgctgcattcacatacagggagggcgtactataatgagaaacatcttgatgaggtttgctccataaatatagaaagattccggcgccaaaatatggggcaaagaaatcagagctctctttctcatctacttgcatcattctttcacaaggtaattgaacttatggccactatattggctagtcaaccttgtctaagagagtatgacttccttctaagtactgtagttctgttgttcaaatacaggtgtatgttttattcttgtctttaggcatgtatctccacattttgttcttaactatgttaatgaatcaacactggcatttttaggccatatatggtctctcttgagcttgttcaaacatatttggtctgcttaatctaactcactgggggtgtaaatccaatgacgacgactcatatgtaacctttttagtaactagtagctatcaaattgtcagtacatgagctaatctcatcagtgatttcatgttgcttaactcaagatagtcagtaaaatacatttaaaagttatctgcaattcagcatttgtagtatgtctacgcaatgaaatttggcctgaaacttccccaataccaaggttcaagggctagtgtcaaaattgtagcctttagttttcttgctttgtatctgggattattgcatctttctttagttttttaacctgaagagctagatgggcttaaccagcaatttatattgcctgcagtttttccgcatcgatgccctttcggataaggttatatcgacttacactggtcggttggagagaatccaggacaatccaagatggatggacaagtcatacagcttgtttgtaaggctttcctttttgatgcttttggtggttatgatgattgatgttgctaaaagttttagcccaagtgctgatattctatctacttgctatttattatgtaggttgaagatccatttgagaaacctgataatgctgctagagcagtcggttcctttgagttccaagatattgtcaatgccttcagcaacgcgagcaataagtttgtttctgatgcgcatgcgcttactgaccgaaatggattattgtcactgctttgcacacctgatgttggatcaaaacttggtggaagagccagtgccagccgttatacaaataccttagtgagtcctcatgacagatttttatgatatcttgactatgtggcacctaacccatacgatgatcatcatcaccagccagccagaggaggaagcaggtcaggtcagagtccacatgggtatactaccaaccggcaaactgcagtgcattaccagaacaataatcatccacaggcatataacacgcagcggcaaacaacagttcatcaccagaaccagaacaatcaacaggtgtatgctgcagggaggcaaacaggaggtcagtaccagaatacccagcgtagcaaggagaacacatcatatcgtcattcaaattggcgagcagcaactacatggcacgagccagtttgtggatgattctacaatggagaatggcagtaacgctctcagaccggcctcaccatcagcatcagttgatcataactgatggtcctaggatagcaacagattatctttagctcttgcctgacaatatgtcaatatgcatcacatttcgattcccttaggtctcgacaaacaatatgtatgagctcatgaaatttagcgcaagttattgccagccagctcgtatggttgagcgagcctggggcttatgtgcattttgagatctagaagatgtattgctgaacatgcagctctatcacttctgatgttcaatatataactttaggccatcttccttctcc</dnaseqindica>

External Link(s)

NCBI Gene:Os01g0846500, RefSeq:Os01g0846500