Os01g0866300

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Revision as of 05:12, 25 June 2012 by 127.0.0.1 (talk) (Created page with "{{JaponicaGene| GeneName = Os01g0866300| Description = Similar to VAMP-like protein YKT61 (AtYKT61) (Geranylgeranylated protein 1) (AtGP1)| Version = NM_001051440.1 GI:1154...")
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Gene Name

Os01g0866300

Description

Similar to VAMP-like protein YKT61 (AtYKT61) (Geranylgeranylated protein 1) (AtGP1)

Version

NM_001051440.1 GI:115441250 GeneID:4325070

Length

3777 bp

Definition

Oryza sativa Japonica Group Os01g0866300, complete gene.

Source

Oryza sativa Japonica Group

 ORGANISM  Oryza sativa Japonica Group
           Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
           Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; BEP
           clade; Ehrhartoideae; Oryzeae; Oryza.
Chromosome

Chromosome 1

Location

Chromosome 1:39270668..39274444

Sequence Coding Region

39270775..39271009,39271600..39271697,39272379..39272492,39272949..39273014,39273247..39273333
,39273810..39273860

Expression

GEO Profiles:Os01g0866300

Genome Context

<gbrowseImage1> name=NC_008394:39270668..39274444 source=RiceChromosome01 preset=GeneLocation </gbrowseImage1>

Gene Structure

<gbrowseImage2> name=NC_008394:39270668..39274444 source=RiceChromosome01 preset=GeneLocation </gbrowseImage2>

Coding Sequence

<cdnaseq>atgaagatcacggcgctcctcgtgctgaagccgtcgtcctccggcgggggagcatcctcgtccggcggcggcggcgggtcgggcggccccgaggcggtggtgctggcgaacgcgacggacgtgagccacttcgggttcttccagcggggcgccgcgcgggagttcatcgtcttcgtcgcgcgcaccgtcgcccagcgcacccagccaggccagcgccagtccgtccagcacgaagaatacaaggtccactcacacaacaggaatggtctttgcgcagttgcatttatggatgatcactatcctgtacgaagtgcattttctcttctgaataaggtacttgacgaataccagaaggctttcggggactcttggaaagctgctacaaaagatgcaacagatgctgcccaacagtggcctttcttgacagatgctttgacaaagtttcaggaccctgcagaggctgacaagttaatgaaaatccagagggacttggatgaaacaaaaattatcctacataaaactattgagagtgtgctccaaagaggggaaagattggatagcttggttgagaagagttcagacctgagtgctgcttcacagatgttctacaagcaggcaaagaaaacaaaccaatgctgtactatactctga</cdnaseq>

Protein Sequence

<aaseq>MKITALLVLKPSSSGGGASSSGGGGGSGGPEAVVLANATDVSHF GFFQRGAAREFIVFVARTVAQRTQPGQRQSVQHEEYKVHSHNRNGLCAVAFMDDHYPV RSAFSLLNKVLDEYQKAFGDSWKAATKDATDAAQQWPFLTDALTKFQDPAEADKLMKI QRDLDETKIILHKTIESVLQRGERLDSLVEKSSDLSAASQMFYKQAKKTNQCCTIL</aaseq>

Gene Sequence

<dnaseqindica>108..342#933..1030#1712..1825#2282..2347#2580..2666#3143..3193#ttctctacgatcgccgccccccaagccaaatccacgcatcgacgcggcaggagcgggcggctgctgcgagatcggcggcgccgcagatctcgcgcccaccagcggagatgaagatcacggcgctcctcgtgctgaagccgtcgtcctccggcgggggagcatcctcgtccggcggcggcggcgggtcgggcggccccgaggcggtggtgctggcgaacgcgacggacgtgagccacttcgggttcttccagcggggcgccgcgcgggagttcatcgtcttcgtcgcgcgcaccgtcgcccagcgcacccagccaggccagcgccagtccgtccagcacgaaggtaaacaacccatcgtcctcctcagatctgcctccgcacttagggtttgcttgctttctgacccgatgctcagatccggtcttcacatggacttggattatgtgggatatagacttttaccgctgatccgatagtagtccaacatagttggaacatcagcgggctgtggaactacagtattagcttgcttgtggatggagtaggtagcgttgcctgttagttcaatctgatacggtgttgggcttcatgggaactatttgcttgtttgtggataggtagtgttgcctgttagttcacaatctgatgcgctgttgggtttgtttcaacatggaactcgtttgtggataggcagtgttgcctgttagttcaatctgatgcgctgttggatttcgttgaaaagagtgaccttgtgttcgtcgtaaggatatctggtgaaaatatgggacctgattccaacgtttatgacgagttatgatgcaattgtttgtgcaatctgcagtcgatgttcattttcggtctagtgatcaggagaattcagtttgctgttgttaatgaacggtcatgtaaacaagttgtcctgatatttgcagaatacaaggtccactcacacaacaggaatggtctttgcgcagttgcatttatggatgatcactatcctgtacgaagtgcattttctcttctgaataaggtatgagcctttgttcttgacattcctgtattgcatatccttgtatttgacctaggatcagattcacaagcaataagggattgtctccttgctattctcagtgggataaaacatttgatcttctgaacaggcacaaaaaattatgttgtgcatacaagggtgatgctaagctgatgcatcttatttcacccaacattagcagtcctttttcttcacttctgttcaatatgtttctgcagtggtttgttgaaaattaatagaaacaacctatgtacaattttctatggcctggttctatgttgaacagaacatacatcttgttgtgttcggatactttgaagcttacccttctatctaggaactccttttcattcacctagctatataatggatcttcgaggctgaaacctggcacactatatcattccgaaactcctgagtcctgataacaagtatacacctgaatcaatgttttagtcaatgagtagttcagttctatttatttcatgcaaccactctacgtcatctttcatacatctacatacatgtgaatacgtgattagataatttattaatgatccatgaccctttgatctgctagagtaagtttcatgatgcaacacatcagtagttaagaattatcctaattatccagttattgatagaattcattttatgaaggtacttgacgaataccagaaggctttcggggactcttggaaagctgctacaaaagatgcaacagatgctgcccaacagtggcctttcttgacagatgctttgacaaagtttcaggtaaagctttccatgaacaaaaatacaatctgtttatggtttcattgatcagaggtaatggaaatgttctacaaatattgttacacactattgacctggggtcaggggatattttaccatctcctttatggaggacaaccgaaccttacaataaacaaagaaaagtgtaactgaagaagttcatttgttttacaatgtattcttccatcatctcaattgaaatatgctatgcttgttcttggatgaaaagagaaatgtccattagccatatgataagttatttgctgcttttggttggtgtctgaacatattatatgctttcgacttattaagacaactgcttttgtttgtgattttcttcttgtccttgttggtccaaactgccagtacttaaacacgcactgcatcctgcatgaatgttttcttatgagataacttgatttcattattttgtaggaccctgcagaggctgacaagttaatgaaaatccagagggacttggatgaaacaaaaattatcctagtaagtatttcttaccagaaaaaaaaattatagaatagctctgccattcatattggtaaataccaacacttcttgttctaacaaactcaatgacccgatcttgtgctggagcttacgatattgacttgaattcatattatctactgttatgaattgatatctcataacttatttttcatatgggtaaaactgcttgctgatgtgcattgtttatgttctaatatttgaacagcataaaactattgagagtgtgctccaaagaggggaaagattggatagcttggttgagaagagttcagacctgagtgctgcttcacaggtaatcatgtgttttcatgtttgcttttttacttgatgagtgcttcttactttttgttctcactgtgattcctcaagtacatttgtttaggactacacatatttttcacgcgcatatgtctgttgaattagtggggttttcttttctattatgaagaaattgccaaccatggaaatattgtataagcaaatccttgattatgtaaatagtatatatgaatctgttggttatggcacagctatacttatgccaggtttttggctgtagcctatgataattctagtctgtttattatgtgacgggagcaaaatatgatagaaccttaagcccctgtttgtctaggctgtcattcgtctatttcagttgtagaatcgctggaccctttttaacttacattttttgtttgttaagttttatcttgattaccgtttgtctccagaattttgttgagggatattgtttttcttttcttccagatgttctacaagcaggcaaagaaaacaaaccaatgctgtactatactctgaagtttggactttcctgtccttaagatgaagactccaggttaattttgcttatggacataagaacccactttttctgtatttactagtttcatttaggtccgttcccgtaaaataaatttcaccatatgtatgacttcttaccacacttttttgcccccttttcagaagccgaccgatactgtttagttctacagtaagatcaattgccgtgaatcgtgccaaagtaaaactgtcaaaactattattctttggtgatgaaggaaccttccagggtttatgttccagagcaactaacacattcattgaactgcatgtcccgccagcaatcgccaacatcttgtttccactggatagattgttgaattctcaaagcatgttggagtacacgctctgtttgctactcgtaatttatgttattgatatgattggtatttgatgtctctactatgactacagtattttaaaggtacactcgattacattgccggtaataggcatatagtagttgcgtaccatgtcgagttgatcatgagttcatgaccagccccgtgtgaaatcctcggttcaagttctttctgagttgc</dnaseqindica>

External Link(s)

NCBI Gene:Os01g0866300, RefSeq:Os01g0866300