Os01g0868200

From RiceWiki
Revision as of 05:12, 25 June 2012 by 127.0.0.1 (talk) (Created page with "{{JaponicaGene| GeneName = Os01g0868200| Description = Zinc finger, DHHC-type domain containing protein| Version = NM_001051454.1 GI:115441278 GeneID:4325051| Length = 609...")
(diff) ← Older revision | Latest revision (diff) | Newer revision → (diff)
Jump to: navigation, search
Gene Name

Os01g0868200

Description

Zinc finger, DHHC-type domain containing protein

Version

NM_001051454.1 GI:115441278 GeneID:4325051

Length

6097 bp

Definition

Oryza sativa Japonica Group Os01g0868200, complete gene.

Source

Oryza sativa Japonica Group

 ORGANISM  Oryza sativa Japonica Group
           Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
           Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; BEP
           clade; Ehrhartoideae; Oryzeae; Oryza.
Chromosome

Chromosome 1

Location

Chromosome 1:39371803..39377899

Sequence Coding Region

39373013..39373510,39375171..39375404,39376033..39376326,39376419..39376604,39377646..39377708

Expression

GEO Profiles:Os01g0868200

Genome Context

<gbrowseImage1> name=NC_008394:39371803..39377899 source=RiceChromosome01 preset=GeneLocation </gbrowseImage1>

Gene Structure

<gbrowseImage2> name=NC_008394:39371803..39377899 source=RiceChromosome01 preset=GeneLocation </gbrowseImage2>

Coding Sequence

<cdnaseq>atggcgcagccgcagccgcagtcgcagcggcagcgcgtctacgaagcctggaaggggaataataggttcttctttggtggtcggctaatatttggacctgatgctaaatccctgcttttttctgttgcactgatttttgtcccggttgcggtcttctgtgcgtttgtagcacggaatcttcgtcatcaatttcctgcatacaatgcagggtacgcaattcttgccgtagcaatagtgttggcaatctatgtgctttcgttacttttcatcaccgcagctcaggatcctggtattgtacctcgtgcatctcatccaccagaagaagagtttcactatgacaatttatctcttgcggacacacctggcagactagtcttccctcgtgtaaaagatgttatggtaaatggggtgcctgtgaaggtcaagtactgtgaaacttgcatggtttttcggcctcctcggtgttcgcactgttccatttgcaacaattgcgtggaacggtttgaccatcattgcccctgggtagggcaatgcattggaaagcgcaattaccgatactttttcctatttgtttcttcggcgagtatcctatgcatttatgtatttgctatgtcagcattgtacataaagattctcatggatggagactatcccacagtgtggaaggctttgaaacactcccctgcttctcttgcattactaatatattgtttcatctgtctttggtttgttggtggactcacaggatttcatacatatctcatcagcacaaaccagaccacatatgaaaatttccggtacagagcagatggcagaccaaatgcctatgatcgaggatgtatgaataactttctagaagtcttctatactaaggttccaccttccaaacacaagttcagggaacctatacaagaggaagcgcgagctccaccagctaaccgtgctgtggagagagaagaagagccggttggtgctcggacaaaagtggaagatgaccttgacataggtggtgatctcttgaagatctcacaacgacataattatgatggcattgatattgaaatgggaggtggagacagaaatagtaggaatgaggctgtctcaaactccaaattgatatcaaagacggatgcacaagctcctacagtggaagatgaggtacagcacccgagtcggggtgaaagaagtcgaagttcggacctcgcatcagaaggcatcacaacaagtgctccagtctcccaacctgcattcccatttcggagagaagctctttag</cdnaseq>

Protein Sequence

<aaseq>MAQPQPQSQRQRVYEAWKGNNRFFFGGRLIFGPDAKSLLFSVAL IFVPVAVFCAFVARNLRHQFPAYNAGYAILAVAIVLAIYVLSLLFITAAQDPGIVPRA SHPPEEEFHYDNLSLADTPGRLVFPRVKDVMVNGVPVKVKYCETCMVFRPPRCSHCSI CNNCVERFDHHCPWVGQCIGKRNYRYFFLFVSSASILCIYVFAMSALYIKILMDGDYP TVWKALKHSPASLALLIYCFICLWFVGGLTGFHTYLISTNQTTYENFRYRADGRPNAY DRGCMNNFLEVFYTKVPPSKHKFREPIQEEARAPPANRAVEREEEPVGARTKVEDDLD IGGDLLKISQRHNYDGIDIEMGGGDRNSRNEAVSNSKLISKTDAQAPTVEDEVQHPSR GERSRSSDLASEGITTSAPVSQPAFPFRREAL</aaseq>

Gene Sequence

<dnaseqindica>4390..4887#2496..2729#1574..1867#1296..1481#192..254#cacagtagccgctttcattcaccatcgattcctctctcggctgcttgccttctctctctctcttcttcgcgtcgatttcgtgcacttcagtttcttgcgtgcgagcatcgatttcttcctcgccggctcgcgcggattcgatgggttgttgattggaggagagcctcgggagggcctggagtccgctgcccatggcgcagccgcagccgcagtcgcagcggcagcgcgtctacgaagcctggaaggggaataatgtgagaattgttcttcctctcgtgtatactcgtctcgtttccgcttcccctttctggtattgagttggttttacagtttctagggatcgtatcggtgttctcgtttagggtcttgggaggattttaggatttttacctcttaaattgttgtttgtatactagttttctttattgttaggttaggagggggatcggtttgtgctctgttctaggattcgaaggtttgtgctccgttataggattcgaatttcgaagcgttcgtgaggttttgctgtttcttcagcttaccaattttacattttgtatcaacatttattttttttctcttgcggggatttccctttttttttttttttgagaaacacagtataaacgcatgcgctcacaacttacgcacactcacccctatgaacgcacacacgcacaccctacccctatgagcacctccggccacatgcgcctcgctgtgataccttttcttttcaggtgtgttgtgatactatttgtttcattaatcataacatatagtctagcaaacacagattactgccaagtttgtaggctttgtggaatcgagttgccctagctgtttgaacttgtcgattcgtttaattagttcagtagtgcctagttttaagaagcaatgtatactatgatatcactacttgtttggaatgccctatgttgttccaatgcaatactatgcttcatttttggcgtggagataacggatgcgaaaaaatctgaatgcgaatgtcagagtggctgtgatggggacatcactcgtaccgaccctgtctgcaatcaccatactgtcagttgaatcggattgatttgtgttgtctttttttagataattgatggtctatggaattgatgctccagaacattaataacattttttttaagcttacatacattgcttaggcctttttacttcagctgcaatttgctccatctttgaaagtgtgtggcactctgtatgtcttcatggtggaatggattcattgttgtgaactgatcgatgcttctaatctgcagaggttcttctttggtggtcggctaatatttggacctgatgctaaatccctgcttttttctgttgcactgatttttgtcccggttgcggtcttctgtgcgtttgtagcacggaatcttcgtcatcaatttcctgcatacaatgcagggtacgcaattcttgccgtagcaatagtgttggcaatctatgtgagtattttggtctatttcttgtaggtatctttcacactgggcattttaagatttaatgacacaacaaatgcgcattctttttcttgcaggtgctttcgttacttttcatcaccgcagctcaggatcctggtattgtacctcgtgcatctcatccaccagaagaagagtttcactatgacaatttatctcttgcggacacacctggcagactagtcttccctcgtgtaaaagatgttatggtaaatggggtgcctgtgaaggtcaagtactgtgaaacttgcatggtttttcggcctcctcggtgttcgcactgttccatttgcaacaattgcgtggaacggtttgaccatcattgcccctgggtagggcaatgcattggaaaggtaacttttttttgtgtgttataagctagtaatattaagtagtgagatgattactcttacactacagcaaattcagcaactgcttgattaaaatctaaaggcagagtatttagttgtccgcaataaacttataccgcttgtctacatgatttccctgatattatctccttgcttttaatcaacttatttttaacaaagtaaactttctacggttattgattgctggacagcaatgtcatctaagagcagagttgctcaacataatgttacaggcaatcactacctaatgtacatgtagcattcactggaattgtactgattcacttcccagtcagtagttggtgacttgacacccctcaatattcatgttatagacaatgtgattgcaaaggcaaactgtcagtttcatatttactaaaaatgctcctatatattcatacgagctacctggttttaacctttttggttaatttgatatttataagaaaattattcatccatagtgtaaatatgagtttctcataggcatatctacaattgatagcatccaatgtcaaaaatgttttgattgagttgctccattttttagttgcttatcttaatttccttctacttttccattgtgcagcgcaattaccgatactttttcctatttgtttcttcggcgagtatcctatgcatttatgtatttgctatgtcagcattgtacataaagattctcatggatggagactatcccacagtgtggaaggctttgaaacactcccctgcttctcttgcattactaatatattgtttcatctgtctttggtttgttggtggactcacaggatttcatacatatctcatcagcacaaaccaggtcagcctgtttatgtgaagtttatctttctttttgctagttgatttgcctgtgctcctgatcaaagatttatgtttttgcctgtttgtttctaccatcgcaacatcatctagtcatattatgcttagtgcttataatgagagattttgaaaaaaaaatatttatttgattaattggttgggaaagagggcgttttcagtttctccattactatttttgtctgaatctgggattcctcttcttaatttagtactgtggtgtcagtgtgtgtgtgcatttgtgagggtaagggactaagggtgccagcttctattcttttgctcatgggaaagcacaaaccctttgattcgatgagttcagttcagggctttaggtattacacttacaggaactctttttttcgtgcttccttgtctcaagcacacattttaaatcttgaaaacaactatcgaggaagctgatgatacatatttaggtcctttttggaggtccaatccaagccaggatcttggcccactgcccaatccccagaaattgggcctcataaatgggcctttaatcaggattcaggggttgggattagagcagaaattggattccttaaaatgcttatttatgcttctgcatttactggactgtatgtacagatataaacaacgttggattatctaagtagatctaaaggcagctaattccaaggggctgtttggttgcttcccaaacattgccacactatagttaggcaagtttgacttttgggtgtaaatgtttggttgaagccaaagatttggcatgccacacttttctactctcatggcccacatgtcatacactcacttgttaacaaaaatttgccacaagtgtggctttcttttttggtgccacaaaaactatggcataccacacttgtggcatagaagtttggtaaagtgagtaatccatccaaacagcctcaggactccatccttaaatacaagcattcataaacatttttggagagacaaggagaagaaaaaatgactttggtgcccctcattaaatgagggatggttgggggtaagatgggaaaaaaaatgaatgagaggtgattgatggggaaaatagtactctaggaatccttatacttttgacaaattttaaatgcttggaatgcttatatttgtggaagaagggagtagttcctaaataatacttagggcccctttgaatcaaaggatttatgtaggaatttcataggattcaaatcctataggaaattttcctatttggccctttgattcaaaggattgaagctttccaaatcctatgaaattcctatggaatgacacattgcatgtagattttggaggaaatttagcaagagctccaacctcttggaaaatttcctttgagtctatctctctcatccgattcctgcgtttttcctgcgctccaatcaaacgaccattcctgtgtttttcctgtgttttgcaatcctctgttttacacttcaattcctgtcagaatcctatgtttttcctattcctccgttttttctaccctgcgattcaaagggcaagcattccaagcatttgaaacaaccccttttagatgcctcttctcctgaacataaatatttttacattgcatgatctctgatacggatgctttggcttttcagaccacatatgaaaatttccggtacagagcagatggcagaccaaatgcctatgatcgaggatgtatgaataactttctagaagtcttctatactaaggttccaccttccaaacacaagttcagggaacctatacaagaggaagcgcgagctccaccagctaaccgtgctgtggagagagaagaagagccggttggtgctcggacaaaagtggaagatgaccttgacataggtggtgatctcttgaagatctcacaacgacataattatgatggcattgatattgaaatgggaggtggagacagaaatagtaggaatgaggctgtctcaaactccaaattgatatcaaagacggatgcacaagctcctacagtggaagatgaggtacagcacccgagtcggggtgaaagaagtcgaagttcggacctcgcatcagaaggcatcacaacaagtgctccagtctcccaacctgcattcccatttcggagagaagctctttaggcagtttctatgaagtctgaatagatgccagtggcatggatcattaagctgatgaactgattcattcaagtcacatctgcacagacaggaacaaatgcccttcatgaacttcaacggcattcatcagtgctttccaccatttttcatgtatgtacctctgttttcaaagaagtgggcgattacttcgctgtgggtcttttttctgctagtctcatctgatagtgccaggatgattctttttgtaaaaaaaaactgatccatgatacttaggatgctacctgtaattctattgctctgaatttctcctgtgcgcgtatcagttgtcgttcctcatgcacactcttaccctcatatcgtctggaggatgtcgatttcatctagaatgcaaccccattttgtacccttacaaacaatacaattttcttgatagggcaatcatcacttcgttccattttgagaccactctagtgggacaattctgttcacataccgtactatttctccaatatgctgtgctgttgaattcggattgtcagcaacaggtctttctacctctacaacttgacattccaggctcatctggtggtcaatgcagaggacattggcatcatcaccgacatgttgccatcgcaaccagattcagagctgccttttgaatgctggtcgtgccgttgttctactggaatcctgtaatcaatgatatggcgacatcgatccctctcgttggcttctggattcagacttctgcattggactcactctagctgagactggaagcatctcctggtaaatgccgaactccgaagaccttaaggttgtcttctctgtatggttttgcaacccagagaaaatttgcagctgtgatgttgtagatatcttaattgtctcgtggttaccaaagttcagtttggtgcaaaaatttgaccacgacatctcagttactatctgcattttcaggagcgtttgatgcctctgataaaacgccattgctgtctgtcagaaatggaatgttgacccaagagtcgtcgcgtcgcatgggatatcaatttgacgctgacattgcgtatgctggtgataatgcgttagagcgtcagtcagtggagtgcactttcattgtcttccttttaaaaaaaaatacaagaagagaaaaaaagcagagtgtaatttgagcaggtaaggagtcttaccgtgctctctgcttcgcttcctt</dnaseqindica>

External Link(s)

NCBI Gene:Os01g0868200, RefSeq:Os01g0868200