Os01g0869000

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Revision as of 05:12, 25 June 2012 by 127.0.0.1 (talk) (Created page with "{{JaponicaGene| GeneName = Os01g0869000| Description = Protein of unknown function DUF639 family protein| Version = NM_001051458.1 GI:115441286 GeneID:4324926| Length = 57...")
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Gene Name

Os01g0869000

Description

Protein of unknown function DUF639 family protein

Version

NM_001051458.1 GI:115441286 GeneID:4324926

Length

5764 bp

Definition

Oryza sativa Japonica Group Os01g0869000, complete gene.

Source

Oryza sativa Japonica Group

 ORGANISM  Oryza sativa Japonica Group
           Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
           Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; BEP
           clade; Ehrhartoideae; Oryzeae; Oryza.
Chromosome

Chromosome 1

Location

Chromosome 1:39411318..39417081

Sequence Coding Region

39411369..39411701,39411788..39412043,39412542..39412654,39412900..39413587,39414017..39414153
,39414581..39414743,39415119..39415276,39415407..39415511,39415694..39415841
,39416404..39416644,39416745..39416895

Expression

GEO Profiles:Os01g0869000

Genome Context

<gbrowseImage1> name=NC_008394:39411318..39417081 source=RiceChromosome01 preset=GeneLocation </gbrowseImage1>

Gene Structure

<gbrowseImage2> name=NC_008394:39411318..39417081 source=RiceChromosome01 preset=GeneLocation </gbrowseImage2>

Coding Sequence

<cdnaseq>atgctccagctgcggctccagcccccgcgcttcacgccgctcccccgccgcagggtcgctggcggggggcaccaccgtcgccgccgcgccgcggcacccccgccgcccctcgccctccgctcccagtggcggatccccgacgtcgacgcagatgcggtgcaggagcgggtgcggtcgtggctgtcgcgggcgaggggcgccatcgccgacgcggcgaacgcggcgcgggagaaggggaggagcaaggaggaggcggaggggaggaagaagcggcggaaggaggcgctggaggagcaggcgctcgtcgcggtgccggagatcaccgtcgaacggcgggtcggtcgtggctggctctcgctagacgctgtcgtcaccatcgagcagtttgccaggttgaatgggttaacggggaggaaggtgcagaggatctttgaagctcttgctcctagtcatgttcagaatgatgctcgaaatctggttgagtattgttgcttccgctatttgtcaagagataactctgatttgcatccaagtttaaaggagcttgcattccaaaggctaatatttatgactatgcttgcgtgggaagatccatatggtgaagatgatgacacagagtcttcactagataactattctatactgggaagacttgttggagaagatgcctttgtccgaattgcccctgctgtggcaggtgtagctgatgtttcaacggctcattatctcttcagggcccttgtcggttctgaaaaggggctttctttagatatatggacaacataccttggtgaacttctgaaagttcatcatgggaggcaaacacataaaagtggagatcattttttgtccgatgagcaagtcctatgcataggctctagtagaaaaagacctgttctgaaatgggaagaaaacactgcgtggcctggacacttaaccttgaccaacaaggcactctattttgaggccattggactgacaagtaccaataaaccattgaagcttgaccttacagatcgtaattcaagggttgagaaagcaaaggttggaccatttggatccagattgttcgactctgccgtatctgtttcatctggttcagtgtcaaatgagtggacattggagtttgttgattttggtggagagatgagacgagatgtatggctcgcattcattagtgaaatcatttctgtgtataggttcattaatgaatatggaccaagggatgatgatccagcaattcatcatgtatatggtgcccacagaggcaagaaaagagctgtaagtagtgcagcaaatagtattgcaaggcttcagtctctgcaatttatacgtagactttatgaagatccagccaagttagtacagttctcatacctgtcaaatgcaccttttggtgatgttgtgcttcagactttagcggttaagttctggggcgggccacttgttacgaactccaaagcagcaagtcaaagagcatctcagtggcatagaccttcagaagactcatctagcgcccatgctcatatttttgacatagatggtagtgtatacttgcgcaagtggatgacatctcccagttggacatccagccactcggccaacttttggagaaactcctcagttaagcatggtgtaatattgagcaaatctttagttgtagctgataaaaatcttgtagaaaaggctatggttgcctgtaaagagaagagcaaaatagttgaaaggacacaggccacaattgttgccgctactattgaaggtattccaagcaacattgacctcttcaaggagcttatacttccttttgcaatagtgagtgaaaaattctacaagctcaaacgctgggaaaattctcgtacaaccgcttgttttctacttgtggtttatactattatcttcaggaacatgctttcttatgttcttccattttccttgatgatgttggctctttccatgcttgccctgaaagggctgaaagaacaaggtcggttgggtagatcttttggcaaagtgacaataaaagatcaaccaccttcaaacacaatccaaaagattatagctcttaaagaggcaatggcttcagtggagaattatcttcagaacctgaatctctctcttcttaaaatacgcacaatctttttagcaggccaacctgaggtaacgactcaggttgctcttgttcttctagcatcatctgctgttcttcttgtggttcctttcaaatatgttcttgcattttttatgtttgatcaattcacgagggaactagaattccggagggagatggtcaaggcgttcatgagcttcatgaaggaacggtgggaatctatacatgctgctcctgtggtcgtgttaccatatgaggacggtggcgaacaacataacaagacactcccaccaaaatctacgcagcaaacacaatctggtagtgtacaatctactgatacgtatatgaatttaagcaatggaacttacactcttgatatttga</cdnaseq>

Protein Sequence

<aaseq>MLQLRLQPPRFTPLPRRRVAGGGHHRRRRAAAPPPPLALRSQWR IPDVDADAVQERVRSWLSRARGAIADAANAAREKGRSKEEAEGRKKRRKEALEEQALV AVPEITVERRVGRGWLSLDAVVTIEQFARLNGLTGRKVQRIFEALAPSHVQNDARNLV EYCCFRYLSRDNSDLHPSLKELAFQRLIFMTMLAWEDPYGEDDDTESSLDNYSILGRL VGEDAFVRIAPAVAGVADVSTAHYLFRALVGSEKGLSLDIWTTYLGELLKVHHGRQTH KSGDHFLSDEQVLCIGSSRKRPVLKWEENTAWPGHLTLTNKALYFEAIGLTSTNKPLK LDLTDRNSRVEKAKVGPFGSRLFDSAVSVSSGSVSNEWTLEFVDFGGEMRRDVWLAFI SEIISVYRFINEYGPRDDDPAIHHVYGAHRGKKRAVSSAANSIARLQSLQFIRRLYED PAKLVQFSYLSNAPFGDVVLQTLAVKFWGGPLVTNSKAASQRASQWHRPSEDSSSAHA HIFDIDGSVYLRKWMTSPSWTSSHSANFWRNSSVKHGVILSKSLVVADKNLVEKAMVA CKEKSKIVERTQATIVAATIEGIPSNIDLFKELILPFAIVSEKFYKLKRWENSRTTAC FLLVVYTIIFRNMLSYVLPFSLMMLALSMLALKGLKEQGRLGRSFGKVTIKDQPPSNT IQKIIALKEAMASVENYLQNLNLSLLKIRTIFLAGQPEVTTQVALVLLASSAVLLVVP FKYVLAFFMFDQFTRELEFRREMVKAFMSFMKERWESIHAAPVVVLPYEDGGEQHNKT LPPKSTQQTQSGSVQSTDTYMNLSNGTYTLDI</aaseq>

Gene Sequence

<dnaseqindica>5381..5713#5039..5294#4428..4540#3495..4182#2929..3065#2339..2501#1806..1963#1571..1675#1241..1388#438..678#187..337#agaagcgtcatctgcctctctccgctagtccgcttcccaaactgtagcaagcaagcaagcagtgcgagacaacgtgcagctcccactcccagccaatggaatcgagggaaagtttggcacgcccgcctccgtaccaccactagctcccccccaccgatcgtcggcggctgcggcggcgacgccaccatgctccagctgcggctccagcccccgcgcttcacgccgctcccccgccgcagggtcgctggcggggggcaccaccgtcgccgccgcgccgcggcacccccgccgcccctcgccctccgctcccagtggcggatccccgacgtcgacgcaggtgagcgcccgcaccacccccaccatgtgtgtttgtgtgtgcgtcggtcgccgcgctgatcgctggggtttggtgtggtgtggtgtggtgggcctggcagatgcggtgcaggagcgggtgcggtcgtggctgtcgcgggcgaggggcgccatcgccgacgcggcgaacgcggcgcgggagaaggggaggagcaaggaggaggcggaggggaggaagaagcggcggaaggaggcgctggaggagcaggcgctcgtcgcggtgccggagatcaccgtcgaacggcgggtcggtcgtggctggctctcgctagacgctgtcgtcaccatcgagcagtttgccaggttggtaaaagttatctccgattgcgcttccacggttgattgttcattgtagccacgatgataatagtaatgactagatttgtagaaaaacgagtggacctatctcaatcagttcgtatatcattacagttatgcttcacctactttatgatggtctgagagttgctagatcccatgatcaatgtgagtatgtgacttagtatgtagcgacagtcaatttttggtttggctaaattcagatggtagattttgatagatacctaccttgctgtctgtggaacaaggactagcagcatggatgacaggagcagccatgctcactggcatggctttgatcctagcaacttgcatcccacaaatttacatatggaatcaggttgattggtccatgtatggtcttgtcattctaaatttcgtgtatgttgctgattgggtaagtgagaaatggattcaattggtaacagttcaaaagggcagttggagaagtatatatataatatgagctcatggatggtctgggatctgtcctgaatttcacccatttacatgatttttttttcaggttgaatgggttaacggggaggaaggtgcagaggatctttgaagctcttgctcctagtcatgttcagaatgatgctcgaaatctggttgagtattgttgcttccgctatttgtcaagagataactctgatttgcatccaagtttaaaggtaaaatagttactaattcagtattgttgtttcgatgaagtgtaatatgtgctacagtgctccacactccttaagccaagttccctgtcagttaacacaacattattgcatgcttgttgcacttgttattttttagccagttctagtttttggtaagtacctttacttgaattgttcggcaggagcttgcattccaaaggctaatatttatgactatgcttgcgtgggaagatccatatggtgaagatgatgacacagagtcttcactagataactattctatactggtgaggtgtaattcatctgtatatgtacgcgttgttgtccttgtggaaaacttaaattcatgcaatatcactgagttcctttactggaattacaagaaatgaatttctgagtttgtatgttaacatgtagggaagacttgttggagaagatgcctttgtccgaattgcccctgctgtggcaggtgtagctgatgtttcaacggctcattatctcttcagggcccttgtcggttctgaaaaggggctttctttagatatatggacaacataccttggtgaacttctgaagtaagatcacctttacatcttcggctgatttttctgattgtaatcacacttaagcttctcaagtttcaggaaatgtatttctaacttcaggttacatgatacatctctttatttagacttttggcttagatcttaggccagcaagaaatttgattgcttggctgttgatggctcttaccaccatcataaatcaaaataataatgtatttatatgtcactttaatctggtaaagcgtgatcatgttgtcagattctgtgtccaatttgaactattaattatagttcacaatttcaactatcattttcatatgctcctagggagtattactctatatgctgaatgtttggcttctgtgatcactggtacctgtgcagagttcatcatgggaggcaaacacataaaagtggagatcattttttgtccgatgagcaagtcctatgcataggctctagtagaaaaagacctgttctgaaatgggaagaaaacactgcgtggcctggacacttaaccttgaccaacaaggcactctattttgaggtatgaattaatacttggaatgtgtgtatttttttaagagtgatttcctctgttatttaaaaatatgcatcacttgttgttgctatccgtacagatggcccttttgtcaagcatgcttaagcatcatactgatctcggttctctctaatatttcccatgttatgatagcaaaggaaaaaaatgttctatgttctgtaataccacttgatgttgttttaacactcacgtaaatataaatagataagctgtacaatgatagaacatcttctttcatcaaataagtcagttaaaaaatgaaagttttgttgatcatgtaatttgtgaatcatggtcccctttaacaattctacttgtggcttcttttggaatttcgcaagatgtgatgactttgggcccaactcctccacctttacattgatattggcaggccattggactgacaagtaccaataaaccattgaagcttgaccttacagatcgtaattcaagggttgagaaagcaaaggttggaccatttggatccagattgttcgactctgccgtatctgtttcatctggttcagtgtgagtatgcctggttactctctagaggaaccattttcactattgaaaaaaaaaatgaccccacggtgaccattttcactattaagttgctatctacaaattgctaggagaacactagaactgattactgccaaattgattggtgtaaccataccaaactacaccatagtactccatttgtgaaatcactgctggccactattagctaacaaatacttggcatttcactatagtcaggaggatctgttatttctttgatttgttaccatttctctattggtgcaatattgttaaacatattgattattctattggtttgtagttgtattataaattgtagatttgtgttagcatattgtccgcgctatttaattgtaatgataaaatgcatttagtgtaatctcaaagtaactgattgattgttgacaggtcaaatgagtggacattggagtttgttgattttggtggagagatgagacgagatgtatggctcgcattcattagtgaaatcatttctgtgtataggttcattaatgaatatggaccaagggatgatgatccagcaattcatcatgtatatggtgcccacagaggcaagaaaagagctgtaagtagtgcagcaaatagtattgcaaggcttcagtctctgcaatttatacgtagactttatgaagatccagccaagttagtacagttctcatacctgtcaaatgcaccttttggtgatgttgtgcttcagactttagcggttaagttctggggcgggccacttgttacgaactccaaagcagcaagtcaaagagcatctcagtggcatagaccttcagaagactcatctagcgcccatgctcatatttttgacatagatggtagtgtatacttgcgcaagtggatgacatctcccagttggacatccagccactcggccaacttttggagaaactcctcagttaagcatggtgtaatattgagcaaatctttagttgtagctgataaaaatcttgtagaaaaggctatggttgcctgtaaagagaagagcaaaatagttgaaaggacacaggccacaattgttgccgctactattgaaggtattccaagcaacattgacctcttcaaggtacatgtctgtcatccagttgcatggcttacaaaaacaatatggtttatttaggtttcgttatacttgtggtttgtcctggcatggttactctcatttcaatcagagatttagctttggaaatattatttctttgctgaagttttggtagaaaaaataccgatttattttcagttgagttggaaatctcttgttcttaggcagggggttcatgtttataatgtatctcttgtttcatgaatcaggagcttatacttccttttgcaatagtgagtgaaaaattctacaagctcaaacgctgggaaaattctcgtacaaccgcttgttttctacttgtggtttatactattatcttcaggtaattcacttaacgcatgtatccttttcttgttgagttgttgtactgctccaatgcattgaatatcaacttaaagtaattcagagtagggattatatgtgttgtgaaaaggggtgtagattgttttccttgctaaggtagttatcgtgtttgactcttctttttttttttgttgtgcctggttgtaaattataattcaaaagtattgctgcattaataggaaaatatactcaatatttgaaaattcaccctgccatataaattgaatatcttcaaatttcactgattgggacatttgccaactgcatccaaactgtgtacagttaatccaaaatgaaagttttgagcaattatagacaaaatgcttggcagggcattgatcatcatttgctggttcatttacatgttttatctttatttccaactaaatattgtgtcttccagtattgtacaagcatcatttttctaacatttctctgtatttattatgatatgtaggaacatgctttcttatgttcttccattttccttgatgatgttggctctttccatgcttgccctgaaagggctgaaagaacaaggtcggttgggtagatcttttggcaaagtgacaataaaagatcaaccaccttcaaacacaatccaaaagattatagctcttaaagaggcaatggcttcagtggagaattatcttcagaacctgaatctctctcttcttaaaatacgcacaatctttttagcaggccaacctgaggtatgatgaaataaatctcattctcaactaaaaataacaaatacgagtaagtaattcttgataattcttgtttgatcatatgacaggtaacgactcaggttgctcttgttcttctagcatcatctgctgttcttcttgtggttcctttcaaatatgttcttgcattttttatgtttgatcaattcacgagggaactagaattccggagggagatggtcaaggcgttcatgagcttcatgaaggaacggtgggaatctatacatgctgctcctgtggtcgtgttaccatatgaggacggtggcgaacaacataacaagacactcccaccaaaatctacgcagcaaacacaatctggtagtgtacaatctactgatacgtatatgaatttaagcaatggaacttacactcttgatatttgaagttgtgagcgctttgctggtatgtacagttttgtacagtttcaatattgc</dnaseqindica>

External Link(s)

NCBI Gene:Os01g0869000, RefSeq:Os01g0869000