Os10g0520000

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Revision as of 08:45, 21 June 2012 by 127.0.0.1 (talk) (Created page with "{{JaponicaGene| GeneName = Os10g0520000| Description = Spectrin repeat containing protein| Version = NM_001071618.2 GI:297610796 GeneID:4349137| Length = 2743 bp| Definit...")
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Gene Name

Os10g0520000

Description

Spectrin repeat containing protein

Version

NM_001071618.2 GI:297610796 GeneID:4349137

Length

2743 bp

Definition

Oryza sativa Japonica Group Os10g0520000, complete gene.

Source

Oryza sativa Japonica Group

 ORGANISM  Oryza sativa Japonica Group
           Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
           Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; BEP
           clade; Ehrhartoideae; Oryzeae; Oryza.
Chromosome

Chromosome 10

Location

Chromosome 10:20559711..20562453

Sequence Coding Region

20559711..20559771,20560115..20560156,20560244..20560617,20560689..20560787,20560864..20561158
,20561264..20561472,20561558..20561749,20561964..20562233,20562445..20562453

Expression

GEO Profiles:Os10g0520000

Genome Context

<gbrowseImage1> name=NC_008403:20559711..20562453 source=RiceChromosome10 preset=GeneLocation </gbrowseImage1>

Gene Structure

<gbrowseImage2> name=NC_008403:20559711..20562453 source=RiceChromosome10 preset=GeneLocation </gbrowseImage2>

Coding Sequence

<cdnaseq>atgacggagatggatagacttgttcgtgtttactacggtggtagagtggtggaaccttatgttggtggacatgttgagtttgaggatatgtcattgaagaccattttgtttcccacccacccaactctagatgaactaaggtcacgagtgaaagaagttcttggatggaccaaggataatgtggagattcgtttttatgggagatacgatgttggtcaagggcataagtatatattaaatgtgataggtcagttggaatgggaagtttactttgatttgatgtggatgtggttaagactaccggttggaaggcctaagtggaggcaaagcttcactccttggccctacaatgagccagacatggagaagacagtggcctacctttttgagagtactgccactacacatgctcaccgggatgtggcatacaagcattatgtcaatgagatggactgcttgcagcctcaacatattgagtggttaccataccacacaaatgaggcttcaagcctgaccctgaactcgatgtgcaatcgagactctgactatttcatgtaccagtgcccattgatttgtttctgggcagttcagtaccaccttccgcaccgtgtcatgcgacagttcgggaagaaacaagattggccagttgaggacatctcaactggagttgaattacacaagtatgacagggtgagaacaaagaaggtgaaagactgggggctagagcataatagatacattgatgaatggagaacagccggaaggaacgataggtacatcgagactatacaccaaaatcatcttttctcagagtaccttcgttggctgcataggacatatagactgttcctccgccctacttggacggaagccgacaaagaggatgaccgcgactccgatgagaggcggaatccctatgatgtccggactagagttggatatcaaatggagcacgccccacttagagacagagtctcgagagagctcctcaggagtgtgaatgaaatagggcatgccctccaagctccgaggggtggtgaggacacggagaacacgctccgcaatgttttagagaaagttcgtcaaaggtgccggaaacttgcagcaagattaggttgcaggtcggttggattggacgacgtgtaccaaccggggagactaccaccaccactacctcaatccgcgcgtccaagtactgctcgacactccatcaggatagaagtgcgtgaaggagttggtggctcgtcgtcgtcacgcattaagcaagggaggggaaaggggaaggcgccggctccacctagcgacgacgatgacgacgaggacgaggaggatgaggactacgtcgcatcagacgccgaggagatagacatgtcacagcttcccgatgcgcctcaggggacgcaacccacgcaatacaacttgcgatccactcgggcagcgaaaaagaggtacactccgggctcgcaagcaattcggcgccaacggaaaaaggaggcagagggcagcgccaaccaccctggcgccacggttgggaagggcggcgccagctag</cdnaseq>

Protein Sequence

<aaseq>MTEMDRLVRVYYGGRVVEPYVGGHVEFEDMSLKTILFPTHPTLD ELRSRVKEVLGWTKDNVEIRFYGRYDVGQGHKYILNVIGQLEWEVYFDLMWMWLRLPV GRPKWRQSFTPWPYNEPDMEKTVAYLFESTATTHAHRDVAYKHYVNEMDCLQPQHIEW LPYHTNEASSLTLNSMCNRDSDYFMYQCPLICFWAVQYHLPHRVMRQFGKKQDWPVED ISTGVELHKYDRVRTKKVKDWGLEHNRYIDEWRTAGRNDRYIETIHQNHLFSEYLRWL HRTYRLFLRPTWTEADKEDDRDSDERRNPYDVRTRVGYQMEHAPLRDRVSRELLRSVN EIGHALQAPRGGEDTENTLRNVLEKVRQRCRKLAARLGCRSVGLDDVYQPGRLPPPLP QSARPSTARHSIRIEVREGVGGSSSSRIKQGRGKGKAPAPPSDDDDDEDEEDEDYVAS DAEEIDMSQLPDAPQGTQPTQYNLRSTRAAKKRYTPGSQAIRRQRKKEAEGSANHPGA TVGKGGAS</aaseq>

Gene Sequence

<dnaseqindica>2683..2743#2298..2339#1837..2210#1667..1765#1296..1590#982..1190#705..896#221..490#1..9#atgacggaggtttgggttgtatgatagagtatttgtaatatttcgatgtgtaatgcagtagtaaacttgttgatagttgtaggtggattaaatatttttttggagtagtagctttgggacaatttaagttatgcattggttataatatgtcggtttggactacgtttaggaatgaagatttaatttttgttgcaaagttacatttgattttttggtgtagatggatagacttgttcgtgtttactacggtggtagagtggtggaaccttatgttggtggacatgttgagtttgaggatatgtcattgaagaccattttgtttcccacccacccaactctagatgaactaaggtcacgagtgaaagaagttcttggatggaccaaggataatgtggagattcgtttttatgggagatacgatgttggtcaagggcataagtatatattaaatgtgataggtcagttggaatgggaagtttactttgatttggtaaaatagtcagtttagatctctagaggtgtttgcatcaaagttagttcgtaccgtagaaaatttggatctaaacaaatctccttcttatcattacgttgagaagaattttgtgacatattattctcatcgtggagggggtgcaagtaagagtgaggcctgttgtcgtcaggcaccatcatccaacatgagtggttgtgtgctattgattcagatgtggatgtggttaagactaccggttggaaggcctaagtggaggcaaagcttcactccttggccctacaatgagccagacatggagaagacagtggcctacctttttgagagtactgccactacacatgctcaccgggatgtggcatacaagcattatgtcaatgagatggactgcttgcagcctcaacatgtaagtactttcaatatcacttctagttagacatttacttctttaattgagatactaaccaacgacatctcttcaacttttgcagattgagtggttaccataccacacaaatgaggcttcaagcctgaccctgaactcgatgtgcaatcgagactctgactatttcatgtaccagtgcccattgatttgtttctgggcagttcagtaccaccttccgcaccgtgtcatgcgacagttcgggaagaaacaagattggccagttgaggacatctcaactggagttgaattacacaagtaaatatttcttatctttgtttgctttcattgtcaatgttcaattttgtaccatttaacccttgtcgatgctcactattgtttcatcaccttctacttgtctaggtatgacagggtgagaacaaagaaggtgaaagactgggggctagagcataatagatacattgatgaatggagaacagccggaaggaacgataggtacatcgagactatacaccaaaatcatcttttctcagagtaccttcgttggctgcataggacatatagactgttcctccgccctacttggacggaagccgacaaagaggatgaccgcgactccgatgagaggcggaatccctatgatgtccggactagagttggatatcaaatggagcacgccccacttagagacagagtcgtaagttttcttgcatttgtcaaagttacttccatttgcaccctagaccctaacatatatcttctcacgctttcagtcgagagagctcctcaggagtgtgaatgaaatagggcatgccctccaagctccgaggggtggtgaggacacggagaacacgctccgcaatgttttagaggtaaaatttatttagcactttgcattacttgagttatgcctaacaaacttctttttttttttgaaatgcagaaagttcgtcaaaggtgccggaaacttgcagcaagattaggttgcaggtcggttggattggacgacgtgtaccaaccggggagactaccaccaccactacctcaatccgcgcgtccaagtactgctcgacactccatcaggatagaagtgcgtgaaggagttggtggctcgtcgtcgtcacgcattaagcaagggaggggaaaggggaaggcgccggctccacctagcgacgacgatgacgacgaggacgaggaggatgaggactacgtcgcatcagacgccgaggagatagacatgtcacagcttcccgatgcgcctcaggggacgcaacccacgcaatacaacttgcgatccactcgggcagcgaaaaagaggtaaaatgagcttaccattctcaaatgttatttgatttcccttattttgtttttaaaatgttttaaacattggattttcaaatgtaggtacactccgggctcgcaagcaattcggcgccaacggaaaaagtaatttgtatgaagttaatctattgattggtagtatgacatatgtggtgcactatgtgatataaaatgtaatggactatgtgaggactatgtgatggacttttgacattgtttcatgtgtggaatataggatggactttttgcattgtttgatgtgtgggatatgtgatggacttttggcattgtttgatgtgtggaatatgtgatggactatgtgatggacttttggcattgtgatttgtgcaattggaacctgttttagtctgtacgaatctgtgaattgtgatttgaattgcgaactgtgaattggtacatttgtgcaatatggatcttcaatttgcagggaggcagagggcagcgccaaccaccctggcgccacggttgggaagggcggcgccagctag</dnaseqindica>

External Link(s)

NCBI Gene:Os10g0520000, RefSeq:Os10g0520000