Os01g0878800

From RiceWiki
Revision as of 05:14, 25 June 2012 by 127.0.0.1 (talk) (Created page with "{{JaponicaGene| GeneName = Os01g0878800| Description = Similar to 4,5-DOPA dioxygenase extradiol| Version = NM_001051517.1 GI:115441404 GeneID:4325095| Length = 3397 bp| ...")
(diff) ← Older revision | Latest revision (diff) | Newer revision → (diff)
Jump to: navigation, search
Gene Name

Os01g0878800

Description

Similar to 4,5-DOPA dioxygenase extradiol

Version

NM_001051517.1 GI:115441404 GeneID:4325095

Length

3397 bp

Definition

Oryza sativa Japonica Group Os01g0878800, complete gene.

Source

Oryza sativa Japonica Group

 ORGANISM  Oryza sativa Japonica Group
           Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
           Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; BEP
           clade; Ehrhartoideae; Oryzeae; Oryza.
Chromosome

Chromosome 1

Location

Chromosome 1:39895070..39898466

Sequence Coding Region

39895319..39895885,39898039..39898440

Expression

GEO Profiles:Os01g0878800

Genome Context

<gbrowseImage1> name=NC_008394:39895070..39898466 source=RiceChromosome01 preset=GeneLocation </gbrowseImage1>

Gene Structure

<gbrowseImage2> name=NC_008394:39895070..39898466 source=RiceChromosome01 preset=GeneLocation </gbrowseImage2>

Coding Sequence

<cdnaseq>atgggtcagaggcaaagcaagcagcccagcccggcggccgcggtgcacgcgcgcgcgacgaccacgccgacgccgacgccgggggaagacgagcagcaggggagcgccctcgaagccgagaggagggggaggaggaggacgacgacgaggcgcgcggcggagggcgccatggacaccttcttcctgtcgcacggcgcgcccacgctgtccatcgacgacaccatcgcggcgcagggattcttcaagtcgtggctgccggcggcggtggcgggcgcggagttgccgcgggcgatcctcgtcgtgtcgggccactgggaggcggccgcgccgacggtcaacgtcatccgcggcaacaacgacaccatccacgacttctacggcttccccaaggctatgtacaagctgaagtaccctgcgccgggcgctcctgatctggcgatgaagaccaaggagcttctggagcaagccgggttcgggccggtgaaggaaaaccacagccgcgggcttgaccacggtgcgtgggtgccactgatgttcatgtacccggaggcgaacgtgccggtgtgccagctctccctgcagagcggccgcgacggcgcgtaccactacgagctcggcagggcgctggcgccgctccgcgacgacggcgtcctcgtcctcggctccggcagcgcgacacacaacctccgcaggatggggcccgagggcacgccggtgccgcagtgggcggcggagttcgacgggtggctgcaggaggcgctgctcggcgggaggcacgacgacgtgaagcggtacgaggagaaggcgccgcacggcagggtggcgcacccgtcgcctgaccacttcctcccgctgcacgtcgcgctcggcgccgccggtgagggggccaaggcggagctgatccaccgcagctggagcaacgcctcgctctcctacgcctcgtaccgcttcaccaccgccaagaactga</cdnaseq>

Protein Sequence

<aaseq>MGQRQSKQPSPAAAVHARATTTPTPTPGEDEQQGSALEAERRGR RRTTTRRAAEGAMDTFFLSHGAPTLSIDDTIAAQGFFKSWLPAAVAGAELPRAILVVS GHWEAAAPTVNVIRGNNDTIHDFYGFPKAMYKLKYPAPGAPDLAMKTKELLEQAGFGP VKENHSRGLDHGAWVPLMFMYPEANVPVCQLSLQSGRDGAYHYELGRALAPLRDDGVL VLGSGSATHNLRRMGPEGTPVPQWAAEFDGWLQEALLGGRHDDVKRYEEKAPHGRVAH PSPDHFLPLHVALGAAGEGAKAELIHRSWSNASLSYASYRFTTAKN</aaseq>

Gene Sequence

<dnaseqindica>2582..3148#27..428#cggccccgtataaggaggagaagaggatgggtcagaggcaaagcaagcagcccagcccggcggccgcggtgcacgcgcgcgcgacgaccacgccgacgccgacgccgggggaagacgagcagcaggggagcgccctcgaagccgagaggagggggaggaggaggacgacgacgaggcgcgcggcggagggcgccatggacaccttcttcctgtcgcacggcgcgcccacgctgtccatcgacgacaccatcgcggcgcagggattcttcaagtcgtggctgccggcggcggtggcgggcgcggagttgccgcgggcgatcctcgtcgtgtcgggccactgggaggcggccgcgccgacggtcaacgtcatccgcggcaacaacgacaccatccacgacttctacggcttccccaaggctatgtacaaggtccgtccgtccgtccgtctccttccctcgaatcgaatcccttgtttcttgattgagaaatggccgtacaacgtggagcgattccgccaaaattggaccttggtcgttcgtttctttgttcgagcatcttctactttgggcattttacactttcggaaatgagcgcgcggaaaacgaggttgaagatgttgggaacacagcctcaaggattgggtattcggatttcctacatgctatagggaagacgtcaaatttggatggttttgattccaaatcgcgcagaatatatgggaagaaatcgatctttctgccttggttatcggaaaaccacactacatggttgctgaaacctggtttggcaactggtctgaatttactcgtaggcaacaccatggcagcatgataccatttctccgcatgctcatagccttaggcaggtttacaaaatcggccgtaattgcacggttattgcatttacctccggatatggtaatggtaatactgcaataaccccaacaaattcttataaattaaaataataaatgaaatttcgataaattttgtatggtttgtcacaaatatcgcacggtaacctcacttaccgctggggtgtgataaccccgcgcctgatgtaggggaaactggtcaaaggtgaagattacttctccatatatgttatactactatatattattatgcatggagtatttaggtatctcgtgttgtatattttatatcacgtgggactgattggagcgcaatcaaagactaaaacatgctagtattatactagatctttcatgctagtttgtgaagtacatgtcccattgcatcttagatatgcttattaaacatgggagtaggtcctaccacttaaacatgggagtaggaagagatgcccaaaagtttagctgatctgaacttttaccaaccccagcatcccatctgatgcagacatgacattgtgtattttgtttgaggctgtgagcaaaattagggaatatttgtgggcaatgggcataccaaactactacaagtgggtaaagtgcgcttgtcactagcatctgccggatcgttcagtcgatcagtcagcaaggattttgctgtgagctatgtctaaatggctaattaaatttagtttcattttcattactctgttcagcatttgagttactccctccgttgtaaaatataagggattttatctcataatactagtatgtgtcacattcaccaaaatagcttatattttgggacggaaggactagcatatacaccataagatagttgtggatattactagtaaaggttatgatggccaagagtaaatatttacgcaattgtttttaagccagtcgaataaaaatgggtgtgtactctggtaatttgggtgaacctgttatcggagaaaccacacccatcaaagctgccgtacaaaatatttagttaggtagtatatatgcatcaccataaggatttgattactcatctagtagcttattggtccttttcgtcgaaggaaagttgctactcataagtatttagttaggtactatatatgcattattataagtatgtgctacttcctccgtcccagaatataagaatttttagtgttggacacaagtattaagaaagtagtcagaattaaatgggagagagaagtgcaggtatgtaggaaaattgaatggtgaagaattgtgattgattgagaaaagaatgttagtgaagaagtttttatattttgggacaaatcttaagtgctagaagttattatattttaagacgaatggagtactatttatccatcatatatgctcctgtagtcgtgtggttgaaggtagattcattgttggcgtatgataacttttcaatagaaagattttgtactcttttcttatatgcaaccaaacaattactaaatcatactataacttaaatccattccgctcaaaaggatgcatcatgcatggaaaacgttatatttcctggaagcaaaaggtatatgcgtataacgtaatcactacatcagtatctctgaccatagtactgaataatttcattgcatcagtatctacccttctgaataatgacgttgcatttgcatgatcgcatcagtatctgaccataccgaataatgttgttgcaaacagctgaagtaccctgcgccgggcgctcctgatctggcgatgaagaccaaggagcttctggagcaagccgggttcgggccggtgaaggaaaaccacagccgcgggcttgaccacggtgcgtgggtgccactgatgttcatgtacccggaggcgaacgtgccggtgtgccagctctccctgcagagcggccgcgacggcgcgtaccactacgagctcggcagggcgctggcgccgctccgcgacgacggcgtcctcgtcctcggctccggcagcgcgacacacaacctccgcaggatggggcccgagggcacgccggtgccgcagtgggcggcggagttcgacgggtggctgcaggaggcgctgctcggcgggaggcacgacgacgtgaagcggtacgaggagaaggcgccgcacggcagggtggcgcacccgtcgcctgaccacttcctcccgctgcacgtcgcgctcggcgccgccggtgagggggccaaggcggagctgatccaccgcagctggagcaacgcctcgctctcctacgcctcgtaccgcttcaccaccgccaagaactgaaaaccggtcgacgcgatgcacgccggctcgccgcatgcaaccacgtgtttgcttgtaacatatttgactcgaacaataatccccgtgggctcacgtagacgtgtgtgccgtgttcgtgtttgtatttctcggagccgtggcttggggttgtttacttgtttttttttttgtaagattgggttgggcctgggcctgggcctgggccgtggcacagccttatggcgttaattggtgttcttatttggaccc</dnaseqindica>

External Link(s)

NCBI Gene:Os01g0878800, RefSeq:Os01g0878800