Os01g0885300

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Revision as of 05:14, 25 June 2012 by 127.0.0.1 (talk) (Created page with "{{JaponicaGene| GeneName = Os01g0885300| Description = Conserved hypothetical protein| Version = NM_001051558.1 GI:115441486 GeneID:4324882| Length = 5687 bp| Definition ...")
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Gene Name

Os01g0885300

Description

Conserved hypothetical protein

Version

NM_001051558.1 GI:115441486 GeneID:4324882

Length

5687 bp

Definition

Oryza sativa Japonica Group Os01g0885300, complete gene.

Source

Oryza sativa Japonica Group

 ORGANISM  Oryza sativa Japonica Group
           Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
           Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; BEP
           clade; Ehrhartoideae; Oryzeae; Oryza.
Chromosome

Chromosome 1

Location

Chromosome 1:40210690..40216376

Sequence Coding Region

40211073..40211100,40211182..40211273,40211424..40211504,40211976..40212063,40212159..40212254
,40212350..40212411,40212548..40213054,40213289..40213981,40214200..40214274

Expression

GEO Profiles:Os01g0885300

Genome Context

<gbrowseImage1> name=NC_008394:40210690..40216376 source=RiceChromosome01 preset=GeneLocation </gbrowseImage1>

Gene Structure

<gbrowseImage2> name=NC_008394:40210690..40216376 source=RiceChromosome01 preset=GeneLocation </gbrowseImage2>

Coding Sequence

<cdnaseq>atgatggcagctgaggttaatcaaacttttttcgcgtggtcacaaggagaaccaactgaacgggacggttctcaaggtgtatctgtgtcccagaaaattgatcatggttccatctcctttggaagattcgaattggagtctctatcatgggaaaagtggtcagtattttctgatgacaagcgtcatgaagaatttggcaaattcaatggtttagttgcacagaagaaggcatattttgaagagtattacaggaaaattagagaactgaaggcacagcagcaaaaccagcaaactgaacttattttggaatacagtggtgatggcagtgattcgagtcagacaggagaatatacacaaggtgcagagcttgaaactcctactggatctggaactatcgttgatgattatgtggagcaaggtgcacatgaaactacctctgagcaaggattgacatgttatgatgaccatgaaaacgagaacttcaatgcagaattctcctcatccaatatttcttcttcagctgtaggtttacagcaaactggccgggatgctagagaaaatgtacacggtgatgattcggctggtaaaatggatttagagcagcagaatgccatttctggtcatagtcttggaacagcatatgaagttgtaagggctcctaaaagaattatcgagaaagactccaggcttagatatgctccaaagatagtaccaaagtctgtcaaaacctcctccgatagtcctctggatcgcacatctgttagtaagaggcctgattctctgaagcttggcatgagtattaaccagaaggctaagactgacaatgatcgtttattgagaggaccaaatgtagcgcctcataagatgtctggatcaaccgaaaggaacaagcttacaacaaaacaaacaggtgtcagaagaccttcctctgcatcctcacaacggccctctgtgggagagcggcaccggatagccagggagagcataaaaaagcctgctgatgtttccaccccacggcgtccttccactgcagaaaggcaccctgtcaccacagagcgtgcaaggaagcaagccgatgtagatacaccacgccgaccatctacttctgaaagacgtgctgtcaacaaagggagtgctgacatgaccactacacatcgcccctctactggagaaagacgatctgttaccagggagagtgttctgaagatggacgtaagaacacctagcaagacaaggcctactatgacgcaactgaagggtgcaacaaccacagtgggtattgttaaaaaggcaggcactccaaatgcttctaaaagcatcaacatgggaacaaaaagcaatatcagagaactggaaggaccttcgaaagtgggcagacactctgttgggtcaaaaattacggacctgcaaattgctggcaaacagaaatcaagctctgtccaccttcctccacggaaactattgagttccagtattggagaaccagcactgcaaacctttacaaggccaaaaaagaaagatgttgcagcgcaatctcgagcatctacatcgaagagagcaatgactttgcacactggaaacgtaaaggggaggagttcaaatccacccccaccaccacctccaccgcgtcggccttcacggacgacgaacagaccaaatggcagtaactcatcaactgttggacaaaagccaaaggtttcatcagcaccaaaatggcattga</cdnaseq>

Protein Sequence

<aaseq>MMAAEVNQTFFAWSQGEPTERDGSQGVSVSQKIDHGSISFGRFE LESLSWEKWSVFSDDKRHEEFGKFNGLVAQKKAYFEEYYRKIRELKAQQQNQQTELIL EYSGDGSDSSQTGEYTQGAELETPTGSGTIVDDYVEQGAHETTSEQGLTCYDDHENEN FNAEFSSSNISSSAVGLQQTGRDARENVHGDDSAGKMDLEQQNAISGHSLGTAYEVVR APKRIIEKDSRLRYAPKIVPKSVKTSSDSPLDRTSVSKRPDSLKLGMSINQKAKTDND RLLRGPNVAPHKMSGSTERNKLTTKQTGVRRPSSASSQRPSVGERHRIARESIKKPAD VSTPRRPSTAERHPVTTERARKQADVDTPRRPSTSERRAVNKGSADMTTTHRPSTGER RSVTRESVLKMDVRTPSKTRPTMTQLKGATTTVGIVKKAGTPNASKSINMGTKSNIRE LEGPSKVGRHSVGSKITDLQIAGKQKSSSVHLPPRKLLSSSIGEPALQTFTRPKKKDV AAQSRASTSKRAMTLHTGNVKGRSSNPPPPPPPPRRPSRTTNRPNGSNSSTVGQKPKV SSAPKWH</aaseq>

Gene Sequence

<dnaseqindica>5277..5304#5104..5195#4873..4953#4314..4401#4123..4218#3966..4027#3323..3829#2396..3088#2103..2177#ggccgcgtagttacgcaacgaatcaatcacccccgcggtgattaccactgcaaacaccaccaccgccgccgtgggaaccggcattagaagcgaggagacgactaatcaagccaccaaaaaaaaatttaagacccctccctcctccttgccgcactcaccaccaacctgtaatgtgaacctgctgctctgcgagttatcggtgttcatccagcagcgagagcggtggcagtggtactaggagtctaggacgagtggtgggtactggttgtactggtggtacggcggtttcagcggcggagttctcgcgggattgtctcgttcgtctgatccggcgctggaggacggcggttggtttctttttcttctgctgcttcgcgagcgggtgtgagagatcggttccatgcgggggtcgctgctgctggcctcgggccgtcaggtgatggagaattccggctcccctgttcttcgctttgttcgtgtgtggtttttggttcttgggggagtttgcatggagaggagagggtgaggttcttgggggattcttggtatttgctgtgatggaaggcgtgttcttggatgcttggggtgtcggtttgtttgtgagttggtgccggattctgcaatgccgcggggttttgttagatttgatgattcggtgctcgatgagcgtttcttggttcgtctggtgatttcttttcttttttctttttcagtttttgtttgtttgtttgagttttgagcggttttgtgggacggatgattcgaagggatgttgaaaagttcatcggaaagtgattgcgccgtaaatgttcgattgggcttttctttgacagaaaaattcggttctcttttcggctcagcgcatcattgccgctcttgagaaagtgcctccttttcccctcggtttcctgaactttctgcgatgtaactgctcgtctgcctctcgctctctcccgctttttcatgcttttctttggtaaattcagttagattttcgtgagaaattttatttgggatcgtcggtttttctgacgcttatctgacagttactaccttttctcctctttccatttctgatgtttttttttcttaattttctctctctgtcttcatttatcttgcttagtgtcattggtactgtgatgcttgcctgaacacgtcctgaattcagccagtgcacaattcgctgaaggccatgccaagcaaaacttgttcttgagaaagatccttgtttttacttgtccgatgaaactccctctctttttctatctaccaaatggtagtacttctgaagatgcaattatgggcttagaacagtggattcaggactgctaattttgtggggacttttgttacactttcatgctttcactggttcttgtattatttcagacttccatgttctctttttggttttgatttgcacttgcgtttagttttcttgttttctctgtcatgttatcatttggaccgcaactggtccgggtggttggcatgtgaacgaataataacgccacaatctaggtggttggcatgtgtttctggctgcatgtggtttcgggttgagtgattcaattgcagatcgggaggttggaatttcgtgtgtgttggaaccttgacccaaaaggaaagaatggagtgttgaaaatgctgtcatagtgtcatggccttggtgattcaagtaaaattgactatacaaatttttacagagaggatgtggatgctggagtttttattaggaaacttaaaactactccactgttgtagaatttttggccctttaggtagtactgaatcacttctagtcggttgtaatttagttttgtgggctgttaagttccaatgcaaatgtaggttcgaggtctttagtgtggtatagtagaaatgtttgctccgagttataacatgcttttcatctcaagtttccagtttttttttctgtgtggtaaacgtccacctaactgtgtgtctgtatcatttcaaacttccctttcagttgttagtatgtcagatcaaatttcaagtgttgattataatgtatttgactttgcagggtttgcaagcggaatctactcaactatgacggattagcctcaaaataaatgatggcagctgaggttaatcaaacttttttcgcgtggtcacaaggagaaccaactgaacgggacggttctcaagtaagttttctaaggtattctggctagtagtagtagacgacttcattttaaataaattgtacaatgtgagatcaatttcaaatggtaatgttacactctgaagttaaagcaattgtagttcttcgcaaaaaaaaaacacaaaaattgtagttctgttcctgtgaagccagcagctaatagtctcatttcctttctatttcattgtttactatcctcagggtgtatctgtgtcccagaaaattgatcatggttccatctcctttggaagattcgaattggagtctctatcatgggaaaagtggtcagtattttctgatgacaagcgtcatgaagaatttggcaaattcaatggtttagttgcacagaagaaggcatattttgaagagtattacaggaaaattagagaactgaaggcacagcagcaaaaccagcaaactgaacttattttggaatacagtggtgatggcagtgattcgagtcagacaggagaatatacacaaggtgcagagcttgaaactcctactggatctggaactatcgttgatgattatgtggagcaaggtgcacatgaaactacctctgagcaaggattgacatgttatgatgaccatgaaaacgagaacttcaatgcagaattctcctcatccaatatttcttcttcagctgtaggtttacagcaaactggccgggatgctagagaaaatgtacacggtgatgattcggctggtaaaatggatttagagcagcagaatgccatttctggtcatagtcttggaacagcatatgaagttgtaagggctcctaaaagaattatcgagaaagactccaggcttagatatgctccaaagatagtaccaaagtctgtcaaaacctcctccgatagtcctctggatcgcacatctgttagtaaggtaatgaataatagtgtagtactcactgaagctgcggcctttgtcttgtcaaaaatctgcttctatcagctattacgctaccactatctgtctgatattatagactagcaagactagtgcattagtcctaccttatcgtaaatactttctagctaacatatgttttgtgtttatacactcgagggcatgaatctttcagtaaagtcttaagagctttttcattaatcgttgcagaggcctgattctctgaagcttggcatgagtattaaccagaaggctaagactgacaatgatcgtttattgagaggaccaaatgtagcgcctcataagatgtctggatcaaccgaaaggaacaagcttacaacaaaacaaacaggtgtcagaagaccttcctctgcatcctcacaacggccctctgtgggagagcggcaccggatagccagggagagcataaaaaagcctgctgatgtttccaccccacggcgtccttccactgcagaaaggcaccctgtcaccacagagcgtgcaaggaagcaagccgatgtagatacaccacgccgaccatctacttctgaaagacgtgctgtcaacaaagggagtgctgacatgaccactacacatcgcccctctactggagaaagacgatctgttaccagggagagtgttctgaagatggacgtaagaacacctagcaagacaaggcctactatgacgcaactgaagggtgcaacaaccacagtggtatgttctagcacttaactgtaaccgaagttccatctattcatttatgtcgattgacacttttaagtccatgttttcagttaaatctgaaaaacatgatggcatcagatttcttagagttttcatcttcatgcagggtattgttaaaaaggcaggcactccaaatgcttctaaaagcatcaacatgggaacaaaaaggttactcttatgaacatattgaatagacacttggaagagttagatttgtgttcaagattttaattgcattgttttatacctgatttaatgaacagcaatatcagagaactggaaggaccttcgaaagtgggcagacactctgttgggtcaaaaattacggacctgcaaattgctggcaaacagaaatcaaggtgctactataaattagtgttggaatgtggcatgaatcttttacaatatgatttgtaaaacatattttcttgacaaaacttatatcattttgtagctctgtccaccttcctccacggaaactattgagttccagtattggagaaccagcactgcaaacctttacaaggccaaaaaagaaagatgtaagttgctcaaaacttgtatgtgattcttgttattttatgcatgtggccatgagttgtgtgataaagtgccagtgcaatcgtttttgtaacctttgtcatataaacggtgttttaaaattttgctgtcttctttacttttgtggttctagaaccccatgttacctgctgatagattccagtaattcaattgtaaaatcactttcaatcgccacagccacttaactctgattattacgctgcactgacaagtttgtcagttgtgcctggctgtcagctgaacagagattttgctttctctagtgctttaggttctaagaatttggtttcaatgttatgttttgtactgcaatgttgcaccaaaccattatactggacagaaatatagctgaaacaagataaacaaggtactgtcagtaacagttaaattgagtgctaacaatgacaacaaacctttgtttgggtattcaggttgcagcgcaatctcgagcatctacatcgaagagagcaatgactttgcacactggaaacgtaaaggggaggagttcaaatgtaagactttcacagcactacatcatattgggattcctcacctgaatcctaagatgtctttctcttttctttcttttcctgttgcgcttgatgtagctttattcataccatcagattagattttgaccttttgtccactcatttatgcagccacccccaccaccacctccaccgcgtcggccttcacggacgacgaacagaccaaatggcagtaactcatcaactgttggacaaaagccaaagtatgatactcatgatgaacattcaaaagtaatcttatgatgcttcactgcaaactactgaattacacccatccaatgcagggtttcatcagcaccaaaatggcattgatgcaaagggagactttcattcaacctactctcccgcacaaatgatggatctgcgacaagtcgcaccgctacacgaatcttaaagcatcggcattgctgtccacttcccctgaatgatgtttgatgtttctgtatatcagttcctctactctctagtgcctccccccttcccttcagagcaagtccaatatagtgtatgtagttacctgtatcatatcatcaactgcctagctttgtcgcccaaggaacttagaacagtgctgtacatacctcaaataaaatgtttcgtcagctaaagtaaggctaccctgaacatgtgaaaaatctgtggtctctgaacattgtctgcacatcatcagtagtaatggaaatcgttcattcttt</dnaseqindica>

External Link(s)

NCBI Gene:Os01g0885300, RefSeq:Os01g0885300