Os01g0885700

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Revision as of 05:14, 25 June 2012 by 127.0.0.1 (talk) (Created page with "{{JaponicaGene| GeneName = Os01g0885700| Description = Virulence factor, pectin lyase fold family protein| Version = NM_001051561.1 GI:115441492 GeneID:4324885| Length = 2...")
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Gene Name

Os01g0885700

Description

Virulence factor, pectin lyase fold family protein

Version

NM_001051561.1 GI:115441492 GeneID:4324885

Length

2771 bp

Definition

Oryza sativa Japonica Group Os01g0885700, complete gene.

Source

Oryza sativa Japonica Group 

 ORGANISM  Oryza sativa Japonica Group
           Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
           Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; BEP
           clade; Ehrhartoideae; Oryzeae; Oryza.
Chromosome

Chromosome 1

Location

Chromosome 1:40237082..40239852

Sequence Coding Region

40237277..40239757

Expression

GEO Profiles:Os01g0885700

Genome Context

<gbrowseImage1> name=NC_008394:40237082..40239852 source=RiceChromosome01 preset=GeneLocation </gbrowseImage1>

Gene Structure

<gbrowseImage2> name=NC_008394:40237082..40239852 source=RiceChromosome01 preset=GeneLocation </gbrowseImage2>

Coding Sequence

<cdnaseq>atgccagccatggcggacaatcctccattgatcatgctcctcgcgttcttgttctctgctcttcttcttctttctccggctcatggcggcagccgccttcaaagaggtgaatcgctctccgtggaacgcgcctccgacatcctcgtgtcctccaatggcgtcttcgcgttcggcttctacaacctctcctccaccgtcttcaccgtctccatctggttcgccgcctccgccggccggaccgtcgcctggacggccaaccgcgaccggccggtgcacggcgcggggtcgaagctcacgctgcggcgagacggccgcctcgtgctcgccgactacgacggcacgccggtgtggcagaccaactcgagctccggcgccgccgccgccgcggagctgacggactccggcaacctcgtcgtgacaagccatggcggggacgtgttgtggcagagcttcgactacccgaccgacacgctgctgccggggcagccggtgacggcgacggcgaggctgtccacgacggacgtgctccacccgacgagccactacgcgctccggttcgacgaccgctacctcctctcgctggcgtacgacggcccggacatctccaacatctactggccggaccccgacgccagcagctgggccaacggcaggatctcctacaacgccagccgccggggcgtgctcgacgacgccggcaggttcctcgccagcgacaacaccacgttcgtcgcgtccgacacgggcgccgccgccggcggcgtcacgtggcggcggctgacgctggaccacgacggcaacctccggctgtacagcctgcgcgacgccgacggggggtggtcggtttcttggatggccttctcccagccgtgcggcatccatggcctctgcggctggaacggcctctgcgtgtacacgccgcggccggcatgctcgtgccctccaggctacgttcccgccgacgccggcgaccgcggcaagggctgccggccgacgttcaacctcacctgcggcggcggcggtggccggccggagatgggcttcgcgcggctgccgcaaacagacttctggggctccgacctcaacctcttctcctccatctccgtcgacggatgcaaggcggcgtgcctcgagctctgcaactgcgtggcgttcgagtacaaggatgacgtcagcgactgctacctcaagtcggcgctcttcaacggcaagacctaccccggctaccccggcacggtgtacctcaagcttccggcgaacttggtggcggagtcagacacctacaccgccgccccggccgccgccgccgccgttaatctcgcctgcgacgccgcgcgaacagaggaggttctcctctccttctcggccgcctccccggacacgtcgtcgtggcgctactactacgggttcctctcggcgttcttcgccgtggagctctgcttcatcgccttcgggtggtggttcacggcgaggagccggccggcgacgtcggagcaatgggcggcggaggaagggtacagggtggtcaccgaccatttccggcggttcacctacggcgagctcaggaaggcaaccaagaacttcaaggacgtgatcggtcatggccggtacggctccgtgtacaggggcgtcctcgccggcgccggcgacgaccgcgccgtggccgtcaagaagctcaaggccgcgacgccgcagcgtggggacgacgagttcgagaccgaggtgagcgtcatcggccggatcaaccacatgaacctggtgagaatccgcggcgtctgctcggagcgccaccgccggcggcggctgcttgtgtacgagtacgtggacaacgggtcgctcgccacgtggctgtttggcgccaaggagactctcaattggaaccaaaggtacaacattgccgttggtgtggccaaaggtttggcctatctccaccatgagtgcctcgactggatcatccactgcgacgttaagccagagaacatacttctcgacgaggatttcgagcccaagatcagcgatttcgggctcgcgaagatgcaacagaggagggatctcgatgatcccgcctcgtttagcatcagagggaccagagggtacatggctccggaatgggtttcgagtcttccgataaccgaaaaggttgacgtgtacagctacggtgtcgtgcttctggagctggttagaggggccagaatggcggatttggccacggatagcgttggtgatgcggagattgcgatgagacagttggtgtggaagatcagggaagggttgaagattggtgatcggacatgggtaatcagcttggtggatcgtaggttgaatggtagcttcgtttactcacaggtggcgttgatgctggaggtggctacgtcgtgtttggagaaagaaaggaaccaaagaccaagtatgaatgatgtagttaagaagttttacacatcagacaaaaaggttgaattcattggggaaatgtcaagctag</cdnaseq>

Protein Sequence

<aaseq>MPAMADNPPLIMLLAFLFSALLLLSPAHGGSRLQRGESLSVERA SDILVSSNGVFAFGFYNLSSTVFTVSIWFAASAGRTVAWTANRDRPVHGAGSKLTLRR DGRLVLADYDGTPVWQTNSSSGAAAAAELTDSGNLVVTSHGGDVLWQSFDYPTDTLLP GQPVTATARLSTTDVLHPTSHYALRFDDRYLLSLAYDGPDISNIYWPDPDASSWANGR ISYNASRRGVLDDAGRFLASDNTTFVASDTGAAAGGVTWRRLTLDHDGNLRLYSLRDA DGGWSVSWMAFSQPCGIHGLCGWNGLCVYTPRPACSCPPGYVPADAGDRGKGCRPTFN LTCGGGGGRPEMGFARLPQTDFWGSDLNLFSSISVDGCKAACLELCNCVAFEYKDDVS DCYLKSALFNGKTYPGYPGTVYLKLPANLVAESDTYTAAPAAAAAVNLACDAARTEEV LLSFSAASPDTSSWRYYYGFLSAFFAVELCFIAFGWWFTARSRPATSEQWAAEEGYRV VTDHFRRFTYGELRKATKNFKDVIGHGRYGSVYRGVLAGAGDDRAVAVKKLKAATPQR GDDEFETEVSVIGRINHMNLVRIRGVCSERHRRRRLLVYEYVDNGSLATWLFGAKETL NWNQRYNIAVGVAKGLAYLHHECLDWIIHCDVKPENILLDEDFEPKISDFGLAKMQQR RDLDDPASFSIRGTRGYMAPEWVSSLPITEKVDVYSYGVVLLELVRGARMADLATDSV GDAEIAMRQLVWKIREGLKIGDRTWVISLVDRRLNGSFVYSQVALMLEVATSCLEKER NQRPSMNDVVKKFYTSDKKVEFIGEMSS</aaseq>

Gene Sequence

<dnaseqindica>196..2676#atccattgttcaattgccgccgagttgacacaattaacaccaagcaatggtcattagcgctgacacaatgacatactcctaattagtactgcaattttgggtccttgggttgttagaattcataactaactgagatgcgagatttcaccttagtttacagcagctgcagctattagcttcggtggtgcaggattgatgccagccatggcggacaatcctccattgatcatgctcctcgcgttcttgttctctgctcttcttcttctttctccggctcatggcggcagccgccttcaaagaggtgaatcgctctccgtggaacgcgcctccgacatcctcgtgtcctccaatggcgtcttcgcgttcggcttctacaacctctcctccaccgtcttcaccgtctccatctggttcgccgcctccgccggccggaccgtcgcctggacggccaaccgcgaccggccggtgcacggcgcggggtcgaagctcacgctgcggcgagacggccgcctcgtgctcgccgactacgacggcacgccggtgtggcagaccaactcgagctccggcgccgccgccgccgcggagctgacggactccggcaacctcgtcgtgacaagccatggcggggacgtgttgtggcagagcttcgactacccgaccgacacgctgctgccggggcagccggtgacggcgacggcgaggctgtccacgacggacgtgctccacccgacgagccactacgcgctccggttcgacgaccgctacctcctctcgctggcgtacgacggcccggacatctccaacatctactggccggaccccgacgccagcagctgggccaacggcaggatctcctacaacgccagccgccggggcgtgctcgacgacgccggcaggttcctcgccagcgacaacaccacgttcgtcgcgtccgacacgggcgccgccgccggcggcgtcacgtggcggcggctgacgctggaccacgacggcaacctccggctgtacagcctgcgcgacgccgacggggggtggtcggtttcttggatggccttctcccagccgtgcggcatccatggcctctgcggctggaacggcctctgcgtgtacacgccgcggccggcatgctcgtgccctccaggctacgttcccgccgacgccggcgaccgcggcaagggctgccggccgacgttcaacctcacctgcggcggcggcggtggccggccggagatgggcttcgcgcggctgccgcaaacagacttctggggctccgacctcaacctcttctcctccatctccgtcgacggatgcaaggcggcgtgcctcgagctctgcaactgcgtggcgttcgagtacaaggatgacgtcagcgactgctacctcaagtcggcgctcttcaacggcaagacctaccccggctaccccggcacggtgtacctcaagcttccggcgaacttggtggcggagtcagacacctacaccgccgccccggccgccgccgccgccgttaatctcgcctgcgacgccgcgcgaacagaggaggttctcctctccttctcggccgcctccccggacacgtcgtcgtggcgctactactacgggttcctctcggcgttcttcgccgtggagctctgcttcatcgccttcgggtggtggttcacggcgaggagccggccggcgacgtcggagcaatgggcggcggaggaagggtacagggtggtcaccgaccatttccggcggttcacctacggcgagctcaggaaggcaaccaagaacttcaaggacgtgatcggtcatggccggtacggctccgtgtacaggggcgtcctcgccggcgccggcgacgaccgcgccgtggccgtcaagaagctcaaggccgcgacgccgcagcgtggggacgacgagttcgagaccgaggtgagcgtcatcggccggatcaaccacatgaacctggtgagaatccgcggcgtctgctcggagcgccaccgccggcggcggctgcttgtgtacgagtacgtggacaacgggtcgctcgccacgtggctgtttggcgccaaggagactctcaattggaaccaaaggtacaacattgccgttggtgtggccaaaggtttggcctatctccaccatgagtgcctcgactggatcatccactgcgacgttaagccagagaacatacttctcgacgaggatttcgagcccaagatcagcgatttcgggctcgcgaagatgcaacagaggagggatctcgatgatcccgcctcgtttagcatcagagggaccagagggtacatggctccggaatgggtttcgagtcttccgataaccgaaaaggttgacgtgtacagctacggtgtcgtgcttctggagctggttagaggggccagaatggcggatttggccacggatagcgttggtgatgcggagattgcgatgagacagttggtgtggaagatcagggaagggttgaagattggtgatcggacatgggtaatcagcttggtggatcgtaggttgaatggtagcttcgtttactcacaggtggcgttgatgctggaggtggctacgtcgtgtttggagaaagaaaggaaccaaagaccaagtatgaatgatgtagttaagaagttttacacatcagacaaaaaggttgaattcattggggaaatgtcaagctagcaagcaatctgatggcaatgttgtagttgtaaacctcctgtacaaacttcaactatagtgaaaaggagttcttttttgatactctttgtgctagt</dnaseqindica>

External Link(s)

NCBI Gene:Os01g0885700, RefSeq:Os01g0885700

Retrieved from "https://ngdc.cncb.ac.cn/ricewiki/index.php?title=Os01g0885700&oldid=27836"