Os01g0887700

From RiceWiki
Revision as of 05:15, 25 June 2012 by 127.0.0.1 (talk) (Created page with "{{JaponicaGene| GeneName = Os01g0887700| Description = Zinc finger, FYVE/PHD-type domain containing protein| Version = NM_001051571.1 GI:115441512 GeneID:4324896| Length =...")
(diff) ← Older revision | Latest revision (diff) | Newer revision → (diff)
Jump to: navigation, search
Gene Name

Os01g0887700

Description

Zinc finger, FYVE/PHD-type domain containing protein

Version

NM_001051571.1 GI:115441512 GeneID:4324896

Length

4714 bp

Definition

Oryza sativa Japonica Group Os01g0887700, complete gene.

Source

Oryza sativa Japonica Group

 ORGANISM  Oryza sativa Japonica Group
           Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
           Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; BEP
           clade; Ehrhartoideae; Oryzeae; Oryza.
Chromosome

Chromosome 1

Location

Chromosome 1:40321995..40326708

Sequence Coding Region

40322249..40322524,40322596..40322725,40325138..40325366,40326215..40326247,40326334..40326484

Expression

GEO Profiles:Os01g0887700

Genome Context

<gbrowseImage1> name=NC_008394:40321995..40326708 source=RiceChromosome01 preset=GeneLocation </gbrowseImage1>

Gene Structure

<gbrowseImage2> name=NC_008394:40321995..40326708 source=RiceChromosome01 preset=GeneLocation </gbrowseImage2>

Coding Sequence

<cdnaseq>atggaaggaggcggaggcggaggcggaggcggtggcggaggtggaggtggaggaggcggaggcggggcaccgtacgccacgcgcacggcggaggaggtcttccgcgacctccggggccgccgcgccggcatgatcaaggccctcaccaccgatgtggagaagttttacaagctctgcgaccctgaaaaggagaacttgtgcctttatggatatcctaatgaaacatgggaggtgaccttgccagctgaggaagtgcccccagagatccctgaaccagcattgggaatcaacttcgctagggatggcatgaatgagaaagactggttggcgttagtcgcagttcacagtgattcctggttactgtctgttgcattctactttggagcccgatttggttttgacagagaagcaaggaggcgactctttaatatgataaacaatttgccaacaatatttgaggtagtgacaggagccgctaagaagcaggcgaaagaaaagactcccaacagtagtagcaagagcaacaagcctagttcgaaagtgcagtcaaaagctgagtctcgttcgaaatctaagctgtcagcccccaaggatgaagagggaagtggtgatgatgagggagaggaagaggaggatgaccatgacaacactttgtgtgggacctgtggaaccaacgatggcaaggacgagttctggatctgttgcgataactgcgagaagtggtatcatgggaagtgcgtcaagatcacacccgctcgtgccgagcatatcaagcagtacaagtgcccggactgcaccaacaagagggcccgggcatga</cdnaseq>

Protein Sequence

<aaseq>MEGGGGGGGGGGGGGGGGGGGGAPYATRTAEEVFRDLRGRRAGM IKALTTDVEKFYKLCDPEKENLCLYGYPNETWEVTLPAEEVPPEIPEPALGINFARDG MNEKDWLALVAVHSDSWLLSVAFYFGARFGFDREARRRLFNMINNLPTIFEVVTGAAK KQAKEKTPNSSSKSNKPSSKVQSKAESRSKSKLSAPKDEEGSGDDEGEEEEDDHDNTL CGTCGTNDGKDEFWICCDNCEKWYHGKCVKITPARAEHIKQYKCPDCTNKRARA</aaseq>

Gene Sequence

<dnaseqindica>4185..4460#3984..4113#1343..1571#462..494#225..375#gaccgggttcacaacctcgcgtaaacacccacgaaattctccgcaaaagataaaaataaaataaaataaaacccaccccccttctcctctcctccatctcctcgcttcgtcccgttcacaccaccaccgtctcgtcgcctcgtcggcggcgtctcctccgcgcgagggtccccccccaaaccctagccgccgccattgccacgcgcgcgccccccaccccacgaatggaaggaggcggaggcggaggcggaggcggtggcggaggtggaggtggaggaggcggaggcggggcaccgtacgccacgcgcacggcggaggaggtcttccgcgacctccggggccgccgcgccggcatgatcaaggccctcaccaccggtacgccgcgcgcgcgctccctcccttacccgatttctcagtcgccccgcggattcgtgtgactgagctggttgtttgttttgcagatgtggagaagttttacaagctctgcgaccctggtgagtgcgcgccggtttcgatctcttcgtgttcctcgccccgggtgggggattgggagcggaggagctttccgtgtttttgctgcttcgttttgtttgctcaagtgctagattggatgctaaatttggaaaaaaaaaattcgctctttctccactttggtgcttgggttggaacttggaattattggtgattctgtagttttgatcaatgctgcgctgtgttgtagttgttggattctggtaagagattggagctcgggactccagtttcccaaggaaaacggggagaagattttgggggttgattggaaactgtggtggataagttggtaggtttcgtttttttgctgggttgctatcactggctgctgccattagagattgctgagaattttagtcctattggtgccatgggattatcgagtagttgacttcggcgtgtttggatgccctatccatgcttgtgtgcgcgtgcccttgcttgtttgattcggttttattgcaacagacaattcagtaaaaccgtagcatatgatgcttggataatatgctactaccgagttggaagtgtatctttcattgcatggatggtactgtgcgtctggttgtaatacgtggttggttgcttgtgttacttaccctatactagtaattaatgtctgatctgcttatgtgctattattaaatgttactattatgacttggtccgcagtgctgtctacttgagccttgcactctcgttagcagctgggcatacatagtagtagagcaacttctaagctctgaacactattactcagcagattgttcgtagggtttatgggtactaattcttctgttttgaacagaaaaggagaacttgtgcctttatggatatcctaatgaaacatgggaggtgaccttgccagctgaggaagtgcccccagagatccctgaaccagcattgggaatcaacttcgctagggatggcatgaatgagaaagactggttggcgttagtcgcagttcacagtgattcctggttactgtctgttgcattctactttggagcccgatttggttttgacagagaagcaaggtaattttttttcgccaaaaaaatcctgcagttttcttagtcaaaatgacatgaatgttttctatggcttctggtggctgacccgccacatagagttgtcatttgatcaaattttgagcagcaaatcagtatgcatcacatttaggattaggttctggaattcctgtcctgatcagtttctggaattgctggctgccagcaatattcttagtgttatttaatggacacgaaactgaaagagactatgacaatatctaaaggagtgaatgtttctttaagctatgtaattcacagtcacttcatattctcgaaaggttttattaggaacagcacaaaagtatgaccgaaaagccgttaattccagttataactgaattgaatttatttcatggttccatgtaagcttggcaggaaacttttgtacttatgatctgaccagttattgaagatttgctaaaatagagtagatttcagtttgaactacagcaataaacacagttcactctcgctattataggctagatttcagtttgaactacagcaataaacacagttcaccgtcgctattataggctagatttcagtctaacctacagcaacgatgtgcatcatctaacattgggactgttaattgaaaaggtcctgggctacttttcttggtgaacatgtaaaaaggatgggactgtcattggcaagttgagttagcgagaaatatctaatctaaatcagttaaagtgatgtttgtacatttctagttctctgttgaaacatttctagtgcatggtataccagcctttaattcagtgtttgttaagaggatgaaattacgaagtctatgtttgtttgctgcttggagatatatgctaatgttcatcacatactattaagctattcagaggatctattttcttgtaaatgtggtttccatactttttagagtaaattaatgcgcttagaaatgttcatgttgtagaagcataatgtaatacatgctttacgtctaatgctactcagacgcgattttgcagaatagattgtggaaagtgttaccagaattccagaatataagaaaatgcacaccatgttgtaggaggatgtgcaacattttttttattcaataatcataatcagcagtgctaatcatttatatctaacaattcatttttatttttagtattgttactcatttcaatctctacaaaatcaaaggatcttcaccttgaattcttacatttgtctttttctaaacatgcatacacactaagcgcacagacaaactatttcctgtcacatgctcaagtttacagaccaaatagaatcaaatttcactgtggttctgaatgtttttctgttcaccatcttggattgactccactcgctgcacagagttatcattatttgagtttcttttctaatagaggctgtttatctctggtgttatcttgcttaaaatggttttggctagttatttagcagcaaccaaggtgttttgtggtctaacgagtttttctaaacagtgctattattttgttctagtatattaaatatagttatatacttttattataataattcaacatgttttcataatggggcccatgatatttgaatttccgtatattattattatttgtatgtgtttttgctcttccttctcttatatatgtttccttcaccttcgtttgcttttaattattcataatgtattgtaagtttgcaacattaaccgttcaattacaaattttgaggcctcattctggatatcctatgaaaccttagtagtagttcgccatcaaaactttggatgatcttggacaaattgtcaaggcttagaatggggtattttggtgaatcaacaaatactgttgtcctgtgttctccgttaaccctgagcttgcattttcaccttaatcggtttctttatgttcctacctcctcagctttgttttatcatctattactaactcagatttcagttagaaatttcagatgtttctcttaaattatatacaacagcaactgtattcaattgtatccaagtaacaaaaagtgcttaccatttaatgaggcaaggataatcttaagttagctgtgtcttaacactcgagagctaagacaacctcacaaccgtgagtcaaaatacagagggtttcgctagttggttctcataatcactataagcttgtgggttgtgttgaaggagaatgaatatcttgccaaatatgtgtattaccacagtttagtttgtgatgtctgacctagccaaactgaagttcatctgaatttgacatgtttagttttattttatctttttcttagaaaactgctgtctggccactggctattttatccctagttcaggcttgcttgcactcctaagttacattttggttctactattttcttatgcaggaggcgactctttaatatgataaacaatttgccaacaatatttgaggtagtgacaggagccgctaagaagcaggcgaaagaaaagactcccaacagtagtagcaagagcaacaagcctagttcgaaagtggtaaattaatgagcatgcacttctgttttatcgtgacttgaatctctgctgagtacaatttctttctgcagcagtcaaaagctgagtctcgttcgaaatctaagctgtcagcccccaaggatgaagagggaagtggtgatgatgagggagaggaagaggaggatgaccatgacaacactttgtgtgggacctgtggaaccaacgatggcaaggacgagttctggatctgttgcgataactgcgagaagtggtatcatgggaagtgcgtcaagatcacacccgctcgtgccgagcatatcaagcagtacaagtgcccggactgcaccaacaagagggcccgggcatgagtaacaagaagctgtgtcgaactgtgttagagtggagttgtcaatctccggatgtcatgatctcttagatattatcttgccctagcttttctagtttgtaagcttgtctctaatttaattttaaactgtaactgttgattaacctacctgtgtttaaagcttcatctttcctgtgttaattctagcattcatagtgtgtaaacttgcacatcttgtgtcaactgaagcctgaaggtacggcggctcccctgacc</dnaseqindica>

External Link(s)

NCBI Gene:Os01g0887700, RefSeq:Os01g0887700