Os01g0891000

From RiceWiki
Revision as of 05:15, 25 June 2012 by 127.0.0.1 (talk) (Created page with "{{JaponicaGene| GeneName = Os01g0891000| Description = Glycoside hydrolase, family 20 protein| Version = NM_001051587.1 GI:115441544 GeneID:4324914| Length = 5859 bp| Def...")
(diff) ← Older revision | Latest revision (diff) | Newer revision → (diff)
Jump to: navigation, search
Gene Name

Os01g0891000

Description

Glycoside hydrolase, family 20 protein

Version

NM_001051587.1 GI:115441544 GeneID:4324914

Length

5859 bp

Definition

Oryza sativa Japonica Group Os01g0891000, complete gene.

Source

Oryza sativa Japonica Group

 ORGANISM  Oryza sativa Japonica Group
           Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
           Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; BEP
           clade; Ehrhartoideae; Oryzeae; Oryza.
Chromosome

Chromosome 1

Location

Chromosome 1:40495906..40501764

Sequence Coding Region

40496096..40496262,40496898..40497148,40497407..40497466,40497549..40497647,40497779..40497812
,40497903..40497962,40498184..40498284,40498537..40498602,40499283..40499413
,40499534..40499604,40499861..40499972,40500047..40500082,40500896..40500970
,40501063..40501380

Expression

GEO Profiles:Os01g0891000

Genome Context

<gbrowseImage1> name=NC_008394:40495906..40501764 source=RiceChromosome01 preset=GeneLocation </gbrowseImage1>

Gene Structure

<gbrowseImage2> name=NC_008394:40495906..40501764 source=RiceChromosome01 preset=GeneLocation </gbrowseImage2>

Coding Sequence

<cdnaseq>atggcgcaggctctgagtttggggttgcttcttgcgtttctggcaattcaatcctgcatcgccattgagctgactgatcacatcgacttgtggcctatgccaacgtcggtgagccatggaacacaaagactttatgtcagcaaagatatcacaatgtcaatggagggaagcacgtatcctgacgggaaagggatcttgaaggatgccttccagagggtagttgatttaatgaaactgaaccatgtcgttgatggtgcaaacccaagttcttttgtactcactggtgtaaatgtagttgtccattcacctgaagatgagctcaaattcggagtagatgaatcatataacttatctgttcctacagcaggatatccattgcgcgtacagattgaggctcaaacagtatttggagcacttcatgctttacagacatttagccaactgtgttacttcgatttcacatcaaaacttatagaactcatctcggctccttggagaatttctgacacaccaagatttccttaccgaggacttcttattgatacctcaaggcactaccttcctgttacggtaattaaaaaagtgattgatacaatggcctacagtaaattgaacgttctccattggcatattgtggatgcacagtcatttcccattgaaataccttcataccctaaactgtggaacggttcatattctttttcagagagatatacgacgtctgatgctgtagacattgtacgatatgctgaaaatcgaggtgtaaatgttatggctgagattgatgttcctggtcatgctctgtcatggggcgttggctacccatcattgtggccatcagatagctgcaaagaaccacttgatgtcagtaacaacttcacgtttggagttattgatggaattctttcagattttagcaaagtttttaaattcaaatttgtgcatttaggaggtgatgaagtcaacacaagctgctggactgcaacaccccacattaagaaatggttggatgataaccaaatgaatgtgtcagatgcatacagatattttgtgttgagatcccaaaagctagcaatatcacacggttatgatgtcatcaactgggaggaaacatttaacaattttggagacaaattggaccgtagaaccgtggttcataactggcttggagaggatgtagcaccaaaagtggttgcggcagggctgagatgcatcgtaagcaaccaggataagtggtacctagatcacttagatgccacatgggaggggttttacacgaatgaacctctgaaaggtattgacgacccagagcagcaaagtttggtcattggtggtgaggtttgtatgtggggcgaacaaattgacgcatcggatattgaacaaaccatttggccacgtgctgcagctgctgcagagagactatggactcctattgagaagattgcagaagacccaagattggtcacgtcaagattggcacgcttcaggtgtttgctgaaccaaagaggggtagctgctgcaccggtggctgggtatggccgtacagcaccatatgaacctggtccctgtgtaaggcaatag</cdnaseq>

Protein Sequence

<aaseq>MAQALSLGLLLAFLAIQSCIAIELTDHIDLWPMPTSVSHGTQRL YVSKDITMSMEGSTYPDGKGILKDAFQRVVDLMKLNHVVDGANPSSFVLTGVNVVVHS PEDELKFGVDESYNLSVPTAGYPLRVQIEAQTVFGALHALQTFSQLCYFDFTSKLIEL ISAPWRISDTPRFPYRGLLIDTSRHYLPVTVIKKVIDTMAYSKLNVLHWHIVDAQSFP IEIPSYPKLWNGSYSFSERYTTSDAVDIVRYAENRGVNVMAEIDVPGHALSWGVGYPS LWPSDSCKEPLDVSNNFTFGVIDGILSDFSKVFKFKFVHLGGDEVNTSCWTATPHIKK WLDDNQMNVSDAYRYFVLRSQKLAISHGYDVINWEETFNNFGDKLDRRTVVHNWLGED VAPKVVAAGLRCIVSNQDKWYLDHLDATWEGFYTNEPLKGIDDPEQQSLVIGGEVCMW GEQIDASDIEQTIWPRAAAAAERLWTPIEKIAEDPRLVTSRLARFRCLLNQRGVAAAP VAGYGRTAPYEPGPCVRQ</aaseq>

Gene Sequence

<dnaseqindica>5503..5669#4617..4867#4299..4358#4118..4216#3953..3986#3803..3862#3481..3581#3163..3228#2352..2482#2161..2231#1793..1904#1683..1718#795..869#385..702#actaccctcgccatgcttccggtgcttcctcttccctcttccttgttccaagataggaatccaataagctgtcctgttagttttcagtttttcatccaaaaggtgtagattaggaggtgaaaatgaaggtgcaagtagaggactagaggttccttcaggttttctacttgccttgcgcttgcaggtaagcacattgttcattacgaaatggcttttccatcattgctcactcaagaaaaatacagccacatgtttcccctcgaatttgccaagaaataatagtgaacctgcagcagttgttggatctttgtcacacctcatagattgctttcttccacataattgcagattttgcagagaaggatatcctatcaccttgcaaacatggcgcaggctctgagtttggggttgcttcttgcgtttctggcaattcaatcctgcatcgccattgagctgactgatcacatcgacttgtggcctatgccaacgtcggtgagccatggaacacaaagactttatgtcagcaaagatatcacaatgtcaatggagggaagcacgtatcctgacgggaaagggatcttgaaggatgccttccagagggtagttgatttaatgaaactgaaccatgtcgttgatggtgcaaacccaagttcttttgtactcactggtgtaaatgtagttgtccattcacctgaagatgaggtaatcagctaacttggcctgttgaatagcaagttctcttagaaactgaattggttttttctgttaatgcctgcactgttcatcttctgcagctcaaattcggagtagatgaatcatataacttatctgttcctacagcaggatatccattgcgcgtacagattgaggttagtagaagttaaattgctttatgttgtggaaaatagacaatagttttcaaatgaaaagacagtagaagcatgctccttagttgctacaactccattagcgatgacgactaaattgtcatcctacagaacaacaataaacatgatatgttctatgaacgaagaatatatttctactctgaaattgagtaacctgttttccatacaaaaaaaggttagacacatgttaaaagttcataaaatatgctgatttcacaaatattgatatcacttcctacatattatttttctcaaaagttgcatcacacagattatttaatgtctcggaaataaaaactagcataataccagatagatagatagataactaaatgcaaatcacaagttatctatgtgaagtatcctgtaacatccactgagcaataaaatatactccctccgtttcacaatgtaagactttctagcattgtccacatatatatagatgttaatgaatctaaacacatacatatgtctagattcattaacatctaaataaatgtgggcaatgctagaaactcttacattgtgaaacggaggaagtagtttgtttgctaaagaacaattgctaaaattgtagtgggctctttcatatttgtcttgcatggaaaaggaagtagctaggctgtacaaccaagtgaagcgcatgatgatgtcaaatttatgcatggcccaagtttgctgcaaatagtttgataaagttcatgtaataatgtacgatatccattttctaaaaaaaatgtaataatgtatggtaccttgcaatatttgtaggctcaaacagtatttggagcacttcatgctttacaggtaaccaaccataatttgtatgttctaaaaattcttctgaggcaaatctgacagtaaactcttcatcgctgcagacatttagccaactgtgttacttcgatttcacatcaaaacttatagaactcatctcggctccttggagaatttctgacacaccaagatttccttaccgaggacttcttattggtaagatacaatatgatctctaacctgtttttgcatccccaacaaacaattatcacatagcaatattactaccgactacaagccgacctttgaaatgtgaactttttttaaaataaaaactttggatttaacaaccatacaaacaacataggtatagcataagttgtaccatataaacaaacacatatcattcaattgtacatactgctcataaccatttccctgctgattaaggatcaaatgcgcctgcatgcagatacctcaaggcactaccttcctgttacggtaattaaaaaagtgattgatacaatggcctacagtaaattggtatgtttgctgactagacaatacaaattgcttagaaccattgttgtgtttatgtaagtatgttctttgcaatggttttcattgtgatatcacactatcttgttctttttcatcatgcagaacgttctccattggcatattgtggatgcacagtcatttcccattgaaataccttcataccctaaactgtggaacggttcatattctttttcagagagatatacgacgtctgatgctgtagacattgtacggtgcgttttctgttcattgccatgctagatttatttgccatcacaaaacaaccaaaagcatgcttagaatgaaatgtgggagctacacccatcacaacaaaatatcctaaatattgcaattagtcacattgtaagattgcttttttgttgcttttacatgattgtatacatattgtagttgtttctgttttatttgcatggggtgcgacttatttttgtatgtgcctttatcttccgttgtactgagtactcaagagcttagcccacctttcatattatacatctgataaataaatatagagtgtaactaacaaaatactttgtatattatagagaataatagaactaccaaacaaacaataaaaatatactgtaggaatcatacacatgattgtgaggggccataaacatgttctaaatcttctggatcacaaattacctaaaatattgtgttaaaaataacaaactaacaataattcggcaagggcaatcaaaaggactgacattgactctatttgaagaattgtatatgcagtatgcacaaacatttaatctagttagcttttcagttaaaggctgaacattctatagcatataaattttggatgtctcgctgtcgctatcaccaaagttatgtgctagaatttaaaaaattaagatcaccatctatatctttgcagatatgctgaaaatcgaggtgtaaatgttatggctgagattgatgttcctggtcatgctctgtcatggtaagacacttataaattgttttaaaagatgtaaactccaagcatataacaaaaccacataatattttgtagtgcaaaacttagtttatcctttgaaggcactaaagtaaacagtaagacccatcagtggagttgagagaacactttttttgtgagcatgacacaataagtttatatactatatagtataatagattaataggcacataaccataagaaatggatgaaaatgtgaaaaatgcaccttttcaggggcgttggctacccatcattgtggccatcagatagctgcaaagaaccacttgatgtcagtaacaacttcacgtttggagttattgatggaattctttcaggtgatacattatatattttgctgacagaaacgaaacatacaaatttggtaatataattgttatttcaaaagattatttggtgtttggggtttgggcatgttttggaaagaaatcggtgattattaaacttggtagcacatacatctgaatcaattaataatggcagaaagttgtgattatcttattcaaccgtctgacatagtttctctgttatctttcagattttagcaaagtttttaaattcaaatttgtgcatttaggaggtgatgaagtcaacacaagtaagcagaagtcttgtatatgcattttcttgtggtacacacaccatgaatgtatatattattcattttattattattgtctaatttcaggctgctggactgcaacaccccacattaagaaatggtacaaacaggggaactcaggatttgataacttacatgatgtgataacattctttgtagtcatacaaaataaaccagtcatcttctggcatctctcgatttatttaatgataatcctatttcacggggcaggttggatgataaccaaatgaatgtgtcagatgcatacagatattttgtgttgagatcccaaaagctagcaatatcacacggttatgatgtcatcaactggtatgtcttttggttgcagtccttgcagatttcacaggctttagggagttcacaactattaacaaacatgccatgcttgcagggaggaaacatttaacaattttggagacaaattggaccgtagaaccgtggttcataactggtaatttctcacttcctgtttgatttatgacattaatgagtagggaattgctggcaatgggcataataattgtcatagttaaatactcctatgttctaagaaaaaaaaggggagttagatccaatcacctctaatgtacaattatttgtctttggaatatatgctcacagtaagacaaatagtccatcactagcccatcttagttcttactgttatcaaaacaattatcaactggtacatttactcacaaattaacaggcttggagaggatgtagcaccaaaagtggttgcggcagggctgagatgcatcgtaagcaaccaggataagtggtacctagatcacttagatgccacatgggaggggttttacacgaatgaacctctgaaaggtattgacgacccagagcagcaaagtttggtcattggtggtgaggtttgtatgtggggcgaacaaattgacgcatcggatattgaacaaaccatttggccacgtgctgcagctgctgcaggtaactaatgtagttggctattctaatttatgtggtgaaatattttaattagtgcatgcacatcataatggtgtctgatagtattcgagttggttatcttaacacaggagtatacttagaatgtagctttcttcccatcccatgtacagaataacaatgaaaattttgagaacactgagtagtcattgaaattcccattagtaaaattaaaacatcaactagagtctaaatgttcattactcggatttgttatatgctatttaaggaacatgaaagcgtagtatcaacaatcaaagacacacaagctaattgctgagcaaaggttaggaactccaaccagaagattcctgaaaaatgcccagttgcccacagaaaaaaaaatgtaaccatttccattatctgaaaaagttgcccacaaaaagaatgacatagtaacatgcctgctaatatcaatatactatttaaagcacatggtttacagtacagaagcagaattattgtgcaatattctcgattataatattagcattgcatgttttacttcaatgtcacttaatatactaagaactgcatgaatatgttaacatctctatggacatgaactgactcaccatttcatttgtactgcattcaagagagactatggactcctattgagaagattgcagaagacccaagattggtcacgtcaagattggcacgcttcaggtgtttgctgaaccaaagaggggtagctgctgcaccggtggctgggtatggccgtacagcaccatatgaacctggtccctgtgtaaggcaataggatattcatagcaagatgaaggtagtatgaacagaggataaactttgttcaggattcacttttaccaagtgtaacatcagcatctcaatattcagatagttcagtggttagactattgaatatcctaagttaacctattatccctatttttcccctcttccaattttcaacagaataattttgaggattc</dnaseqindica>

External Link(s)

NCBI Gene:Os01g0891000, RefSeq:Os01g0891000