Os01g0908700

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Revision as of 05:17, 25 June 2012 by 127.0.0.1 (talk) (Created page with "{{JaponicaGene| GeneName = Os01g0908700| Description = Similar to Hnrpa2b1-prov protein| Version = NM_001051681.1 GI:115441732 GeneID:4324990| Length = 4222 bp| Definitio...")
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Gene Name

Os01g0908700

Description

Similar to Hnrpa2b1-prov protein

Version

NM_001051681.1 GI:115441732 GeneID:4324990

Length

4222 bp

Definition

Oryza sativa Japonica Group Os01g0908700, complete gene.

Source

Oryza sativa Japonica Group

 ORGANISM  Oryza sativa Japonica Group
           Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
           Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; BEP
           clade; Ehrhartoideae; Oryzeae; Oryza.
Chromosome

Chromosome 1

Location

Chromosome 1:41321619..41325840

Sequence Coding Region

41322140..41322220,41322349..41322405,41322507..41322705,41322805..41322932,41323031..41323136
,41323309..41323388,41323777..41323874,41323956..41324069,41324155..41324295
,41324389..41324473,41325349..41325427,41325515..41325687

Expression

GEO Profiles:Os01g0908700

Genome Context

<gbrowseImage1> name=NC_008394:41321619..41325840 source=RiceChromosome01 preset=GeneLocation </gbrowseImage1>

Gene Structure

<gbrowseImage2> name=NC_008394:41321619..41325840 source=RiceChromosome01 preset=GeneLocation </gbrowseImage2>

Coding Sequence

<cdnaseq>atgggagggggccagtcgaggagcccgcgggacgggagcggccacgggaggtacggccactcgccgtcgttccagcagcagtggggcggtggcggtggcggcggcggcggcggcggcggtgggtatccctatgggcaggatgcgcatggaggaggctactacggcgcgccggcccgggcggggggcgcgtccaagccgcgcctcgaccgccgctactcgcggatcgccgacgactaccactccgtggatcaggttactgatgcactagctcaagcaggacttgagtcttcgaatcttattgttggcattgatttcacaaagagcaatgaatggttaggaaaattttccttccatggacgcagtttacatcacattagcaatgcacctaatccgtatgaacaagcaatctcgatcattggacagacactgtcgaaatttgatgaagataacttgattccctgttttggatttggagatgcaacaacacatgaccaagacgtcttctgtttttatcctgatttgagaccttgcaatggattctcagaagctctaagccggtacagggaacttgttccacacttgcgcttagctggaccaacatcctttgcaccaatcattgagatggcaatgaccatcgtggaacaaagtggcgggcagtaccatgttctgttgataattgctgatgggcaggttacaaggagtgtagacactgcatctgggcagctgagttcacaagagcaaaagactgttgatgctattgtgagagctagtgaattgccgttgtctattgtgctagtaggagttggtgatggcccttgggacatgatgaaagagtttgacgacaacattccttctcgtgcttttgacaattttcaatttgtgaatttttcggagatcatgaacaaaaacatgccccaatcaaggaaagaggcagcatttgcactttcagccttgatggagatacctcagcaatacaaagcaactgttgaattaggaattttaggtcgtcgctctttcaagtcgcctgaaagggttcctctccctccccctggtggaagccatgatgcttactcgtatggatcaaaaagctttagtaaaccaagtacctacccacagagtagtacatcatcatcgtcatatcctcactatgaaactgcacagagttcgagccctgctgtaccttcttctacttatgacaatcaggtttgcccaatctgccttgtgaaccccaaagacatggcgtttggctgcggacaccagacctgctgtgattgtgggcagagcctcgaatcgtgcccaatatgtcgcagtccaatctccacaagaataaagctatactag</cdnaseq>

Protein Sequence

<aaseq>MGGGQSRSPRDGSGHGRYGHSPSFQQQWGGGGGGGGGGGGGYPY GQDAHGGGYYGAPARAGGASKPRLDRRYSRIADDYHSVDQVTDALAQAGLESSNLIVG IDFTKSNEWLGKFSFHGRSLHHISNAPNPYEQAISIIGQTLSKFDEDNLIPCFGFGDA TTHDQDVFCFYPDLRPCNGFSEALSRYRELVPHLRLAGPTSFAPIIEMAMTIVEQSGG QYHVLLIIADGQVTRSVDTASGQLSSQEQKTVDAIVRASELPLSIVLVGVGDGPWDMM KEFDDNIPSRAFDNFQFVNFSEIMNKNMPQSRKEAAFALSALMEIPQQYKATVELGIL GRRSFKSPERVPLPPPGGSHDAYSYGSKSFSKPSTYPQSSTSSSSYPHYETAQSSSPA VPSSTYDNQVCPICLVNPKDMAFGCGHQTCCDCGQSLESCPICRSPISTRIKLY</aaseq>

Gene Sequence

<dnaseqindica>3621..3701#3436..3492#3136..3334#2909..3036#2705..2810#2453..2532#1967..2064#1772..1885#1546..1686#1368..1452#414..492#154..326#gcgtactcaccttggtcgtcgtcgtcgttcccccgccgcctccgcgtcgcgcacgaggagatatacgccccccgcgtcgcgggcttggttgatcgatcgatcggttggttggttggttttgttggatttttttccttggtcgatctagttgagatgggagggggccagtcgaggagcccgcgggacgggagcggccacgggaggtacggccactcgccgtcgttccagcagcagtggggcggtggcggtggcggcggcggcggcggcggcggtgggtatccctatgggcaggatgcgcatggaggaggctactacggcgcgccggcgccgcaagggggatacgcggcgccgtacccggcttatcagcagccgccgccgccgatgccgtccccagcggcgacgcagccgccggcccgggcggggggcgcgtccaagccgcgcctcgaccgccgctactcgcggatcgccgacgactaccactccgtggatcaggtatctgcccgagcatcatatcctgcggttctgtagattcgtgtggaatttggatattcgatcctgcttttcggagcatcggatttggttgattcgaacccgctcgtgtaggcctttctcccttaatcgcggttttttgtttttccatcttaggattgttagcgaatcgctcgttaccgatttgcacttcatagttggtcaatctgtagctgtagccacttgaaacttcagattaggatgatctgtagtggtggatcgaattgatgtttgtgcaaaaatcagaaggagacgactcgttaagcctgctggtcaactgccaatcactgttgatgaagaattaaaaaaaaatgtttgttgtgaggttgggcattattggcggctccagctttcggccaaccatcattattggttgtagttggtctcttttgcttggtcttctcaattctcaaagatcttatgagtacgcaaattagcattaatcaattgagtctggcctctgtacttcctgaatgctccttgcctcaatgtccaaaatgcggcaattggaggatgtttatttttattggtgggataaactggtccaccagtttaatgtttcacacttccaattttctgcttacattactaactccatgtctaagttttctgaatgttttttttttattttttgcgtagcacattacgctattgttcacaattagttgtttatcggtaaaagttgtttcatatgttgtatttaaacttttctaacatttctgtattctggcctcataaccattagtataagaatcaggcacataagcaaacaatccagtttctattgtgttgctattattcccatgaattggtttgctcaggattaatattaattgcaggttactgatgcactagctcaagcaggacttgagtcttcgaatcttattgttggcattgatttcacaaagagcaatgaatggttaggttagtactaacaaatcgttgtttggtttattttcttatcagtcttttgtgttgcattgccccttgatgcttatggtttgttttcatttacaggaaaattttccttccatggacgcagtttacatcacattagcaatgcacctaatccgtatgaacaagcaatctcgatcattggacagacactgtcgaaatttgatgaagataacttgattccctgttttggatttggagatggtagcgattctattcattagctgaccatttctcgcactatattataatttgtccaatcataattcaactgggtgtgttttttcagcaacaacacatgaccaagacgtcttctgtttttatcctgatttgagaccttgcaatggattctcagaagctctaagccggtacagggaacttgttccacacttgcgcttagctggtaagctgatgttgcccagtgatgcctcttatgctggttctatactgttaattcatacttggaatgttgttttttgaacaggaccaacatcctttgcaccaatcattgagatggcaatgaccatcgtggaacaaagtggcgggcagtaccatgttctgttgataattgctgatgggcaggtactgtgtaaaacacacaaagggaaatattttttttgttaaataaaacattcatgctgaaattttgttttccccatatgaatcgttgttttcagttcactattttaaagctttgaatgacaaaacatgtttttcatatatggagtttcacgtgctgggatcggtggactgttgaatttgaggattagaaatggcatgttctatgtccacttgtgttccatctgaagcatgttgtaatgtcatttgatactctgtcctacatgatccttagtcgagcaattttttatttgaggttattcttagtttgaagcttgttctacatgttggaccaacctaacgactagacattcattttctttataccttattagctgtcatattatcacaggttacaaggagtgtagacactgcatctgggcagctgagttcacaagagcaaaagactgttgatgctattgtgagagctaggttcgtacttcataagttccttttttacattgttttgatatgctcataccgcctgtaactcccatgcattttgactcctgtttttgtggcgattactttatatgttcacatagtttgcgttgcctctgtcatggatgttgctgatgttttgctttctggttttcgtctgcagtgaattgccgttgtctattgtgctagtaggagttggtgatggcccttgggacatgatgaaagagtttgacgacaacattccttctcgtgcttttgacaattttcaagtaagtcactgagaaccctaatgaacccatgtaggcatgtttgtatatggtagatgaaatttttgttactccttactgaggatctattatctgtgtagtttgtgaatttttcggagatcatgaacaaaaacatgccccaatcaaggaaagaggcagcatttgcactttcagccttgatggagatacctcagcaatacaaagcaactgttgaattaggaattttagggtacgcccctaacacgttattactctaatgctttgatctgttgaattattgattcattctgtagtattctgactaaaattaatattgatgtggcatcagtcgtcgctctttcaagtcgcctgaaagggttcctctccctccccctggtggaagccatgatgcttactcgtatggatcaaaaagctttagtaaaccaagtacctacccacagagtagtacatcatcatcgtcatatcctcactatgaaactgcacagagttcgagccctgctgtaccttcttctacttatgacaatcaggtataccttcgcgtgcggtgacaacatgctatctgttgcttgtttcttaaggcaggcatttgcataattttgtgtcttaaataattctttttctcctgtaggtttgcccaatctgccttgtgaaccccaaagacatggcgtttggctgcggacaccaggtgagacattcaccctcttgctagattcagtgttttcttgcttcttgggggtgtcattttctgcttttgtgggcttgttgaaacgtcagcgtcagcatccttttctaacaaagtatataattttgcagacctgctgtgattgtgggcagagcctcgaatcgtgcccaatatgtcgcagtccaatctccacaagaataaagctatactagcaatggcagtttggatcatttgcgaatgggtggcatactggagaccaccttgtgtcacattgggcgatggattgtattggatgcttcaagtgcaatccatgcaaagcctttgaacggcttgcagacaagcccgttaagtactgggtttgcatcgacaaggatcgcaaggccagcaatccactgctccaagattgtggagcaggggatgtctcaagtattgaaacccactaggaatgatccgaactccagtgcaagaagtgggttgataaaatattctaacgaattgaagaaaagaaagaaaaggagaaatcctgatggatcgaacaggagtctgtctgattagtcgaacatttgtacatatcgcgatgttggtttcgtcaccgtggccgacataagttttagaggattcgttttccagtgccgtcttcatgcaagatttgtttgtttattcatgcgtttttgtaaagatttgcagttttcgtatatgattgaaagtgactttttttggtgccattttttct</dnaseqindica>

External Link(s)

NCBI Gene:Os01g0908700, RefSeq:Os01g0908700