Os01g0916300

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Revision as of 05:18, 25 June 2012 by 127.0.0.1 (talk) (Created page with "{{JaponicaGene| GeneName = Os01g0916300| Description = Similar to PQBP-1 protein (Nuclear protein containing a WW domain) (Npw38) (JM26 protein)| Version = NM_001051728.1 G...")
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Gene Name

Os01g0916300

Description

Similar to PQBP-1 protein (Nuclear protein containing a WW domain) (Npw38) (JM26 protein)

Version

NM_001051728.1 GI:115441826 GeneID:4324332

Length

6065 bp

Definition

Oryza sativa Japonica Group Os01g0916300, complete gene.

Source

Oryza sativa Japonica Group

 ORGANISM  Oryza sativa Japonica Group
           Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
           Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; BEP
           clade; Ehrhartoideae; Oryzeae; Oryza.
Chromosome

Chromosome 1

Location

Chromosome 1:41694669..41700733

Sequence Coding Region

41695075..41695221,41695738..41695789,41695958..41696083,41696233..41696331,41696627..41696846
,41697187..41697352,41697696..41697749,41698115..41698245,41698326..41698406
,41699112..41699190,41699293..41699371,41699456..41699490,41699574..41699706
,41699785..41699879

Expression

GEO Profiles:Os01g0916300

Genome Context

<gbrowseImage1> name=NC_008394:41694669..41700733 source=RiceChromosome01 preset=GeneLocation </gbrowseImage1>

Gene Structure

<gbrowseImage2> name=NC_008394:41694669..41700733 source=RiceChromosome01 preset=GeneLocation </gbrowseImage2>

Coding Sequence

<cdnaseq>atggataactcacacgaacagccattaccccctggtgtcggggcatggccgccgccaccttccattcatcctgcaaaatttcaacctaatccacaacccaccatgcctttccctaacatggatgctgggggtgcacaatcaaatcagacagctcatgaagtttccaaccataatgatagtgcagcagacattgaatctgctgtccaagaggctgttcttcgtgaacaggacattgagactcagcaagtcatacaaaatcaaagacaagcaaaagcaacaattgagcctacgcagtatggagaagacctcctttcaaaccgccgcaaccctaatgcattgaaggagcacttactaaaaatgacagccgagcatcgtgcagagatggcaaacaaaagggggaagccgcttcatgcagataatggcaatgttgaaattggcaatggctatggtgtaccaggagggggtgcttattatgctgcaaacatgtcaagtggtcaaatgaataaacccaaggatatagctgataaagcaaaaggtgccgatgatctccctgaatttttgaggcagagattaagagcaaggggtattcttaaagatgaggcgacaaataatagattcacgattaaacaaaatgtcgattctccagtagggcagataaaagctgcccaagagttgcctcctggttgggttgaagcaaaagatccaacaagtggtgcttcttatttctataatcagagcactggaacgacccaatgggatcgccctggtgctcctttgaacaccatgcaacatcaagctcctccatcctcgtccttgccagagaattgggaggaggcacttgatcaatcaacaggccagaaatactattacaatacaaatacacaagcaacacagtgggagccgcctactgctgtgaacccaggtgttgcgcctcatgctcccaccaatgctgctgttgagatggctgctcaaaatacagatatttggaactctcaaatgcagagatgtttaggctgtggtggatggggtgtaggtcttgtccagccatggggttattgcaatcactgcacaagggttcaaaatcttccttttcaacagtatccatcctacccaaacaatactacacactcaagcagtaacaaaaatccagggaatgtagcagccaaggacagatcaagcgcaaaacctccatttggcaaagcaaacagaaaagatcaccgcaaaagaaatcgccctgaggatgatgagcttgacccgatggacccaagctcttactcagatgctccacggggtggctgggttgttggcttgaagggtgtgcagccacgggcagcagatactactgcagctggacctttattccaacaaagaccatatccgtcacctggtgctgtgctgagaaaaaatgcagaggttgcatctcatggcaagaaacgtggtatggctccgatcaccaaaagaggggatggcagtgacggtctcggggaggcggattag</cdnaseq>

Protein Sequence

<aaseq>MDNSHEQPLPPGVGAWPPPPSIHPAKFQPNPQPTMPFPNMDAGG AQSNQTAHEVSNHNDSAADIESAVQEAVLREQDIETQQVIQNQRQAKATIEPTQYGED LLSNRRNPNALKEHLLKMTAEHRAEMANKRGKPLHADNGNVEIGNGYGVPGGGAYYAA NMSSGQMNKPKDIADKAKGADDLPEFLRQRLRARGILKDEATNNRFTIKQNVDSPVGQ IKAAQELPPGWVEAKDPTSGASYFYNQSTGTTQWDRPGAPLNTMQHQAPPSSSLPENW EEALDQSTGQKYYYNTNTQATQWEPPTAVNPGVAPHAPTNAAVEMAAQNTDIWNSQMQ RCLGCGGWGVGLVQPWGYCNHCTRVQNLPFQQYPSYPNNTTHSSSNKNPGNVAAKDRS SAKPPFGKANRKDHRKRNRPEDDELDPMDPSSYSDAPRGGWVVGLKGVQPRAADTTAA GPLFQQRPYPSPGAVLRKNAEVASHGKKRGMAPITKRGDGSDGLGEAD</aaseq>

Gene Sequence

<dnaseqindica>5513..5659#4945..4996#4651..4776#4403..4501#3888..4107#3382..3547#2985..3038#2489..2619#2328..2408#1544..1622#1363..1441#1244..1278#1028..1160#855..949#gatccctgttttggacttggaatttcactagagcaccggcggcgtggttgcgggcggcggcgctggttcggctccttcgctcggctcggctccgccaccgcgccggaggctagggttctgcgaggcgggaggcgtacgcggcggcggcgacagtcgacggagcttccggagcaggagagctccgacggcgcacgctcctgcggctcctcctgcttcccgtccaatctcgcgacgccccccgggcagattcgaggacgaccggaggcggcgaacggcgacccccccgccggataccggcagactaggtgagatttggcgactcctccaccaaatccctagctccccgctcggaggcttccccctccgccgtatcctcgctggccgctggtatctggcctcctcctcttatgtttcatgaatcacacagaaactactgctagtggagtaaggttcagggctttttagtgtcatcactgatgaactcgtttacagatgtcttagatattgcatttgaacctgttgttgtcttctcatgaagaaaaaccactccgctcttaactgctaatgggattgagggtttcttagttcttaggttattgtaagtatctggtcaataacgtgacgctcgtgccatatatgtaattttgagtgtcttaaaaaagaagaaagatctagtataatggtagcacaaagatgtaataagattatgtggaatcatgggatgtgggaatctgattatagtccctaataggaagaaatgtgaatctaaatctgatatcgctgcatcggttcccttgttttgcaggttttctttgttagcataagcttgtgaaaatttagcttgtttcttacttatggataactcacacgaacagccattaccccctggtgtcggggcatggccgccgccaccttccattcatcctgcaaaatttcaacctaatccacagccttatgcaacaccttatggcgctacacccaacaatggcagcaatcacaatgcagcgagctactctgctgctgcacaacccaccatgcctttccctaacatggatgctgggggtgcacaatcaaatcagacagctcatgaagtttccaaccataatgatagtgcagcagacattgaatctgctgtccaagaggctgttcttcgtgaacaggtattcatatcttccacatgatctagattatacatgcagttacagtgctgtcttattaatcagtggttacatctgataactaggacattgagactcagcaagtcatacaaaatcaaaggttggtttgttttctgttgtttccattttactttgtgctggctatctgtatctctttgatatatccgtgaaattttcaactcagacaagcaaaagcaacaattgagcctacgcagtatggagaagacctcctttcaaaccgccgcaaccctaatgcattgaaggttcacagtttacttgtcttttccttctgtggatttttctccttcatttatttctcatgaccctcatttgttaattcaatatcgttttcttggatttttcaggagcacttactaaaaatgacagccgagcatcgtgcagagatggcaaacaaaagggggaagccgcttcatgcagataatggtatttcatagttatgtttcagtgatatataattattatactgtcttgtctattttcacccttttctgcttatgttttgaattctagggggaaggggaagaactattgtacacatagagaaaaatcttataaaatcattttggttataattagttcactgtattatgttccgtaccattccttgagaactttatgctatgtaaccgcagtgacagactgacagagcatggtgccaaaatagggatggtcaactgttggctaggagtatagtttagtgactctggtttcatttaagtcaaaactatgagtaaaagaataagttctagatagcacaagtatgacttggtatactagtttgagtagaatctttgcatcttcatgcatactggagtgacaactgataagataccacaatagaacacttcttcttcttccctctccttctctctctctctctcctgggaaacaatagagcactctaatttagtgatagatgtttagggaagaagtgctgctgatgtgccaatctcttaatatgatagaaagggctgtaattggatagaaataaaatgattacgctacatgtcttaaaaggattatcaatagcaatgaccctctgccactgtgtacctgctgtattacatcgtttacactgaggatgtagttgaccctctttgctaacctgatgattatgcatgcttccaggcaatgttgaaattggcaatggctatggtgtaccaggagggggtgcttattatgctgcaaacatgtcaagtggtcaaatgagtatagcacttctctctaagttagtactgctttaaaatatttacaaatggttgggtttaactaatattctttcctttcagataaacccaaggatatagctgataaagcaaaaggtgccgatgatctccctgaatttttgaggcagagattaagagcaaggggtattcttaaagatgaggcgacaaataatagattcacgattaaacaaaatgtaagttataattcttaaattagttgtttccgcaactaaacaaaatacaaacaggacggatgcatataagctgtaaactgatcttattattcatggtagaatcaattgatatcatgcagtatcatatgtgtacaagtaacatagatgaaaagaacatttcctggcaaacctatcaaaactgcgtagtagattgaaaagagatgaatttactgatgactacaacagaatccagcaacgtggaaagtagtttgtacctgttgattatgctttcactgattttatatactttaaatagtactcattttttatctagcacattttatgttaatgtatcatttgccttgtgtttgtgcaccgttttgcaggtcgattctccagtagggcagataaaagctgcccaagagttgcctcctggttgggtaagtaaacaatcttattcatatattttctgttctgttatgtggttaacttgtctacttgatatgttggttgttgggctagtatatcttgattttctttgtcaaatgcctgtgcattcctacgcatttcggtttcccatagcatgggcactcaactagttctctaacttgtaattctagacattagtttattactttctgtttgctgtgtatacctggacgggctattatatgttttatcctttaacagctctttttttattggtgctgactgtattttgatagtaacagtggctacaagtgttgtatcttatgttttaagggataacttatttggttttaggttgaagcaaaagatccaacaagtggtgcttcttatttctataatcagagcactggaacgacccaatgggatcgccctggtgctcctttgaacaccatgcaacatcaagctcctccatcctcgtccttgccagagaattgggaggaggcacttgatcaatcaacaggtgctatagcatttctataaacatctctctctctctctctctctctctctctctgtaagagtgaaaatgtcactgttttgtttctaagcttatggcctcatgagtatgtttggctctaatggggccctgtgtctgttaagccccagcttctaaaagataacaaaaaaaaagtaatgcatttggctcataaatgataggctgggttggaccaatcaatgtacccagccagcactgattattatttatatgtttatcgagctaggctcattgatattttttttagggcaatgcttatacactttttttattgacttattgacatggtttctgcgtgatttaggccagaaatactattacaatacaaatacacaagcaacacagtgggagccgcctactgctgtgaacccaggtgttgcgcctcatgctcccaccaatgctgctgttgagatggctgctcaaaatacagatatttggaactctcaaatgcagagatgtttaggctgtggtggatggggtgtaggtcttgtccagccatggggttattgcaatcactgcacaaggtactgtatctatctgtaatttatcttttttgagtaacttctgtgttctgaagttcgggtgatttatttctatcatatagaagccatgatgttgcctgaaagcatacctacttttggatccactcaatatggtctaaattatattcatggttttttttggtcatcggagatgtaatgcagtcaatctccagaatcctgatctaagattgcatgtgttgtttttatactataaataaactaatttggtgcttctgaagattttagcttaatgttgatctgtgaattccccttgcagggttcaaaatcttccttttcaacagtatccatcctacccaaacaatactacacactcaagcagtaacaaaaatccagggaatgtagcagccaaggacaggtatatgagatttacattatgcttcttcaaaatgttgtttgtcctagtttatgtcaccaacagattcccagttttctatgcattgtatacctgaagaacaaaagtattgcagcatgtgtatggctattgagattgtgctatatgtgcagatcaagcgcaaaacctccatttggcaaagcaaacagaaaagatcaccgcaaaagaaatcgccctgaggatgatgagcttgacccgatggacccaagctcttactcagatgctccacggggtggctggtacatgatctttttcatcttggtagttaattatgcttcatttgaaattgactatcttcctgtcagttggagctaggatgtgctttgtttttagcttaattaattaaggaagaacacagggatattatatcaattgtctctgatacaagttaaatgcttgtttttcagggttgttggcttgaagggtgtgcagccacgggcagcagatactactgcagctgtatgtcatttgattgcaaaactttctttatcatttgaagtttgatttcttaatatattttcaacaccctttaactttaactgcaaatgtggagaagtacaccatctgtgtaggtaaacactactaccgcatgcacatgctttctcttttgttgggagcaaagcttaccacctccatggtggcaactggcaaatgctgtaggaagtcttatacgataggataatctagtgaccaaccttagattgtgtttatgcttgaagccctaagaactgggctgtatctgctaactattgcggagttgcattttctgtgcaatttgcatgttttgtacttttgtttatttctatgggcaaaccggaattattatgcataaggtatttacaatatcatgtctggtatctagtatctacctacaataccttatgagttatgatttttacctatatatagaccaaactgtggtagtatcatatcatacacagaacaatgaggtcttttttattgtttaatttacagggacctttattccaacaaagaccatatccgtcacctggtgctgtgctgagaaaaaatgcagaggttgcatctcatggcaagaaacgtggtatggctccgatcaccaaaagaggggatggcagtgacggtctcggggaggcggattagatcaatcgtcgtaaattttccttgcaacccagtggactagcggtcattttggctttggcaatgactgaaacatcggtgcactgtcgtccaaaaagaagcaaactgtcagcagtaaatcactccagtgcaggagaacccagagctgagtgcattgtgagactgagcttaataagattcacatcctaaatgtgcccatggtgtaattctcgtgaaatctgcagaagttttcggtgtaaatttttgacagggtgaaagaattcgcaacaggaatagtgatgtagagctaatgtgtaatttttggtattaaccgaaacagttctgttgaatactagaatctaggggttgttttgtggataattcgacctgttaatgctaccatcttaatggaatttaacgtattaatgct</dnaseqindica>

External Link(s)

NCBI Gene:Os01g0916300, RefSeq:Os01g0916300