Os01g0919800

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Revision as of 05:18, 25 June 2012 by 127.0.0.1 (talk) (Created page with "{{JaponicaGene| GeneName = Os01g0919800| Description = Similar to Efflux carrier of polar auxin transport| Version = NM_001051749.1 GI:115441868 GeneID:4324368| Length = 6...")
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Gene Name

Os01g0919800

Description

Similar to Efflux carrier of polar auxin transport

Version

NM_001051749.1 GI:115441868 GeneID:4324368

Length

6535 bp

Definition

Oryza sativa Japonica Group Os01g0919800, complete gene.

Source

Oryza sativa Japonica Group

 ORGANISM  Oryza sativa Japonica Group
           Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
           Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; BEP
           clade; Ehrhartoideae; Oryzeae; Oryza.
Chromosome

Chromosome 1

Location

Chromosome 1:41892073..41898607

Sequence Coding Region

41892284..41892356,41892464..41892537,41895636..41895796,41896901..41896986,41897655..41898154
,41898296..41898493

Expression

GEO Profiles:Os01g0919800

Genome Context

<gbrowseImage1> name=NC_008394:41892073..41898607 source=RiceChromosome01 preset=GeneLocation </gbrowseImage1>

Gene Structure

<gbrowseImage2> name=NC_008394:41892073..41898607 source=RiceChromosome01 preset=GeneLocation </gbrowseImage2>

Coding Sequence

<cdnaseq>atgatagggtggggagacgtgtacaaggtggtggcggcgacggtgccgctctacttcgcgctgttcctgggctacgggtcggtgaggtggtggcggatcttcacgagggagcagtgcgacgccgtgaaccggctcgtcgccttcttcgcgctccccttcttcaccttcgagttcaccctccacaccgacccgttccaggtgaactaccgcgccgtcgccgccgacgtgatctcgaaggcggtcatcgtcgccgtcatcggcgcctgggcgcggttcatgagcaagggcggctgcgccgtgagctggtccatcaccagcttctcgctgtccacgctcaccaactcgcttgtcgtcggcgtgcccatggcgcgcgccatgtacggcgagtgggcgcagcagctcgtcgtccagctctccgtcttccaggccattgtctggctcacgctgctgctcttcgtgctcgaggtcaggaaggccgccatcgggatgtacgtcgacggcgccgaggcggcggcggcggccggcaaggacgtcgaggccgccggcgccgccgccgccgcaggcacggtcgtcgtcgccgccgccgcgggcaagccgtcgctgtgggcgctggtgaaagtggtggcgcacaagctggcgcgcaaccccaacacttacgccagcttcgtcggcatcacctgggcctgcctcgccaataggttacacatcgcgttgccgagcgccttcgagggatcggtgctgatcatgtccaagtcaggcacaggaatggccatgttcagcatgggattgttcatggcgcagcaggagaagatcatcgcgtgcgggacgagctttgcggcgctggggctggtgctaaagttcgcgctcggccccgccgccatggccatcggctccatcgccgtcggcctccgcggcgacgtcctccgcgtcgccatcatacaggcagccctacctcaatccatcacatcattcatatttgcgaaagaatacgggctgcatgctgatgtgctcagtactgcggtgatttttggaatgcttgtctccctacccttgttagtcggattttacatagttttagagctaattaggtag</cdnaseq>

Protein Sequence

<aaseq>MIGWGDVYKVVAATVPLYFALFLGYGSVRWWRIFTREQCDAVNR LVAFFALPFFTFEFTLHTDPFQVNYRAVAADVISKAVIVAVIGAWARFMSKGGCAVSW SITSFSLSTLTNSLVVGVPMARAMYGEWAQQLVVQLSVFQAIVWLTLLLFVLEVRKAA IGMYVDGAEAAAAAGKDVEAAGAAAAAGTVVVAAAAGKPSLWALVKVVAHKLARNPNT YASFVGITWACLANRLHIALPSAFEGSVLIMSKSGTGMAMFSMGLFMAQQEKIIACGT SFAALGLVLKFALGPAAMAIGSIAVGLRGDVLRVAIIQAALPQSITSFIFAKEYGLHA DVLSTAVIFGMLVSLPLLVGFYIVLELIR</aaseq>

Gene Sequence

<dnaseqindica>6252..6324#6071..6144#2812..2972#1622..1707#454..953#115..312#cagcgatcaaccgcattacacttggttaattaattaattctccattagcagctagctagggttctagggttaatttagttgatcagttcgccggaaccggagaagaagaagaagatgatagggtggggagacgtgtacaaggtggtggcggcgacggtgccgctctacttcgcgctgttcctgggctacgggtcggtgaggtggtggcggatcttcacgagggagcagtgcgacgccgtgaaccggctcgtcgccttcttcgcgctccccttcttcaccttcgagttcaccctccacaccgacccgttccaggtgaactaccgctagaaacgcccatggtcttctggctagttccatgagatagtggactagacgatctgggttcgaagcctcactccttctaattatttgatgttagatccttgcttccctaatattcgcgtcttttttaaggtgaactaccgcgccgtcgccgccgacgtgatctcgaaggcggtcatcgtcgccgtcatcggcgcctgggcgcggttcatgagcaagggcggctgcgccgtgagctggtccatcaccagcttctcgctgtccacgctcaccaactcgcttgtcgtcggcgtgcccatggcgcgcgccatgtacggcgagtgggcgcagcagctcgtcgtccagctctccgtcttccaggccattgtctggctcacgctgctgctcttcgtgctcgaggtcaggaaggccgccatcgggatgtacgtcgacggcgccgaggcggcggcggcggccggcaaggacgtcgaggccgccggcgccgccgccgccgcaggcacggtcgtcgtcgccgccgccgcgggcaagccgtcgctgtgggcgctggtgaaagtggtggcgcacaagctggcgcgcaaccccaacacttacgccagcttcgtcggcatcacctgggcctgcctcgccaataggtacgttatgtatacaaattaatttattattacatgtaggctccacatgtcagtaagataagatagataaagaggaacaatttaatttttgcgattacatggcataaccacacaaaaacacactactccacacgtaatatcctcacacatccacaaatgtgcctcctaacacacgctcaaacagatggaaactagtgacacattttatggttacgtaaaaaatatacgtcatcgtgtatccatgagtgtatctgagatcaattgtaattaaatattggttttattaaactcgtagaaaaacatatataggtatgtatgttatatttaaaagtatcaggattaatataaaatcatgcacatatgcacaattgtgcactgccaacgtatcacatagagagatcggtttatgccggtgtgtaatggtatgagtgacaaatgtgtggtggttagctaaccatctgacgtggagatcaccctgacatgacagtagatgcacgtagctaagcatcatgcacgagaggctaatgctattggtagctccacacactggtcatagattattattcttgcaacgtattaattgcgatcgactgtccaattaatatgcgatcgattcgttgtgatggaataccattgatttgttcttccttttttcccctgaactgcaggttacacatcgcgttgccgagcgccttcgagggatcggtgctgatcatgtccaagtcaggcacaggaatggccatgttcagcatgggtacgtacatacatacataagctcgattttttttttggtgtgaagaatacgttaattaattcgattgtacattaggtttatgaagtaattaactagatcacaagttaattaatcatgtacgtagtagtataacaagggcacttgttagtgaaattctacactgatcgttagtattaattaaccttcctttttgtgaatgacttgtatccccacactacttgttccataattcgtatctagtactccagcaagtaatacatattccactagataattacccaaaaaaacacaccaagaatcctataccaaataaaagaaatggaaaataaaatcagcagtatcttcacgaggaaccgttcaaattaaaggcacaagttctgcacgtctgttgcatgcagagagcttgcgatagctagcacgaaaggaaaaaaaaaggggtagaagtatgcttttatttttatttttaaaaaaactctctctgatagtaaatatttgatgtttgagacagtattcaaccaaactttggatattttgatcaattttatacggtgacaagtttataaaatctgataagtttatgacactaatactttctaaacaaatctaattataccatcttattttaattaaaaaagcatacgataatttattataatttgttgatggttggctaaatcttatcgtacatatgaaaatatttatgaaaaagaaaaagaataggacaatagaataaggaattatttgtgttcttgtgctgatagttgcttgcatacagcagcagcagccataagagcaagtttaatagtatagtccactattagctccaaatcatctatagctaatgtaatagccaattcatacaatagttgtttactatactatttcatctgtcatacacacattatgtcttggagtccgtgctgcagctggctacagatttatagcccgctgctcttctctctctttatttatctctttaaaatatgtttatagctggcttatagcatgctattacacctgctctaagtagctatcatttttatttttgattacacgaaagatacttaagaggggcgagacgtgtgtggttttgcatggatgcaggattgttcatggcgcagcaggagaagatcatcgcgtgcgggacgagctttgcggcgctggggctggtgctaaagttcgcgctcggccccgccgccatggccatcggctccatcgccgtcggcctccgcggcgacgtcctccgcgtcgccatcatacaggcaagctacctataccgattggatccatgcacatctctttctctcccctttttgttccttaattctacgcgcatgcacacatatctcacttgctttataatactcaacacgtatactcgtcgttttagataagggtgaggtcaaactttaaaatctttgattatgaatctttttaaaatatttgtccttcaaacatgttgactacatgtatagattgatcttaaaaagtactttcataaaatcatatatttgttaacacttttatacatatagaaaaaataacggtcaaagatgtttttttgagaccgtgcccttattcaaaacgacaagtattatcaacccggagggatgtaccaaacataagttgcactaattgtgtgcaccggaggttttgagctacttcctccgttccataatggagtataagacatatactacgaatgtcgaatttagataaacttccaatttagatttttagtattataatatatcctattcggttcgatttcttatgtttcggtacagatggagtaagcgctaaggcaaggtaatgtttcctcgtatttaggtccatgacatacaaaatacacctctatttcaaactaaggctgtgtttagttcccttcaaacttttaatttttccgtcacattaaatatttggatacatacatggagcattaaatgtggacgaaaaaaaacaattgcacagtttacatataaattgcgagacgaatcttttgagcctaatcacgccatgatttgataatgtgatgctatagtaaacatttgctgataacagattaattaggcttaacagatttgtctcgcagtttacaggcggaatttataatttttttttattattagtctacgtttaatacttcaaatgtgtgtccatatacgtcaaatattttttttttttgcaaaacaactaaacacggcctaaacctaagactacaaagtagaatggcaacgacgtatagacgatgctgggctgatgtcaatctatcagcctttcacaggcatgcaacttaagccatttgattttaccactttacaactaaatgttgaaagcttacttttgacccaaaaaaaaaactctagctgaagattcccacttaacttcccattacaccactagctgatagcctgatacatgcatacaaccagtgcttttagcccttgctgggttcctttgtgtatatatatatatatatatatatatatatatatatattaaccgaacttctaaatgccaacaaagtcatctgccataattgcatttcaccgacattagatcccttcagcaccaaagtattaccgcccaaaggtttttgtctagatatgtcagatgccacacacatagtgcaacactaatggagataaaaaggaattgctagcttaagtacagggctagcaatgtccggaaacaaaagggaagaaaagaaagatgcttgaacaaatggaggaaaagagaatccattgtgaaaactacacattccactgctattcctacgtgagatttgagcttagtttgtcagcacggctcagcaccacactaatcttgaccactgggtgctttaagcctttaaggttaatgttgctcgcagagccacaaacatgaaccgtatttgcacaaaagaaaaggcaaagcatgcacacgaaaggcgcagtagcagattaattatatgttgcgtagtcggtgtgcaagtgcgcattccaaacgacagaactgaattcctgatcagtactaatataatcttcttggaatcttggtcaccttgaccttgcttttaagcaatcagaccatgacgaaaaatttcggcccagcactatatatataccaggcttgaacctcttaccctatcagtgaacatgtaacacgaactggtatccattattgtctgagaaacactcaccatcactttagggcagtgtcttatccatggaatagattggtcttcaatggggcggttcagcttctgttttcatgcaaagaatagtgcatgtccctattgcaccggcacattttgacccctgcttgccaaagagcaaagatcgttgaaattggtctagagatcagatgtgcttaaagtaaagaaaagtttaacaaaataaagtgaagaatgagcatggcacctatgtggaggatctgttcttggcatgttctagagtccgtccccacatgaatgcagtcatccgctaaacaaaaggacaagttaaaaacagcaagtcattagagaccactcattcagatgcttatcgcataatgaatcgaactcaagtgttagttaaacaccaggacccatacaataatatcaagagtctaacagcataatcatgttcaaggttttaaaaacagttagttgctatagtggagtcagcactaataagatgcacaagggaagtcctactcatcatgtcatctagtgcacatttcattcaagagatgggttaacctcgtctgaatcaacagtgggtttactttatgggagaggcaaactagtttttgatgtgcatcacagttataaaactgaaagaataattatcctctttgttccatgtcatcccttaataactgtctacacagccacttctgttcctgtgtatagaattaacaaacattcgaaagtggtaggggctctgctttggggtgacagggcactcctgaatattaaggtaaacaatgtttcggtttacaaaactagagttaaacaggggaatgttgctctgatagtggtccttggaacaagtgtgaactgaattattgtctacaagaatttgtgatcaaagggggggggggggatttggcttccactgaccacccagatagtttaattcaagacaatgtgaaggttatagctttgtacgtgaagccaggactacgcaggttagatctcagacgtcaaatacagtttctctaaattacaatgcttattgtgctctaaagattaaaatgagtgcaaagaaatgacctttctgatttgtcttctaatataataatttttcatatatattcaggtaatttctgtcgacattttgtatcttcctgaaatgatgaaaatgtgcctcaactaacattcgtttgaattcttcaggcagccctacctcaatccatcacatcattcatatttgcgaaagaatacgggctgcatgctgatgtgctcagtactgcgtaagtattttgaactgactacaaactacatattgtcaaaggcatatgtttctgcggacagtgaaatcaaagtttttctcataccattttgttgctcaattttgcagggtgatttttggaatgcttgtctccctacccttgttagtcggattttacatagttttagagctaattaggtagacgcagagccaatggtacatcaggaaaacatagtttttccttgagaattccaaaacatacatactgacaacaaatgttgcaaaatatctcctgccaacattcctcattgcataaaactgtaatgggagtatcgagttctatggaatacttttaacacgttatgtaacaagaatgtatacttattctgttattcaaaagaatgtgttacagt</dnaseqindica>

External Link(s)

NCBI Gene:Os01g0919800, RefSeq:Os01g0919800