Os01g0928800

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Revision as of 05:20, 25 June 2012 by 127.0.0.1 (talk) (Created page with "{{JaponicaGene| GeneName = Os01g0928800| Description = Similar to Serine palmitoyltransferase| Version = NM_001051814.1 GI:115441998 GeneID:4326966| Length = 4107 bp| Def...")
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Gene Name

Os01g0928800

Description

Similar to Serine palmitoyltransferase

Version

NM_001051814.1 GI:115441998 GeneID:4326966

Length

4107 bp

Definition

Oryza sativa Japonica Group Os01g0928800, complete gene.

Source

Oryza sativa Japonica Group

 ORGANISM  Oryza sativa Japonica Group
           Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
           Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; BEP
           clade; Ehrhartoideae; Oryzeae; Oryza.
Chromosome

Chromosome 1

Location

Chromosome 1:42569345..42573451

Sequence Coding Region

42569740..42569835,42569943..42570050,42570177..42570343,42570418..42570544,42570626..42570787
,42570955..42571118,42571210..42571303,42571380..42571504,42571598..42571743
,42571849..42571937,42572653..42572718,42572820..42572945

Expression

GEO Profiles:Os01g0928800

Genome Context

<gbrowseImage1> name=NC_008394:42569345..42573451 source=RiceChromosome01 preset=GeneLocation </gbrowseImage1>

Gene Structure

<gbrowseImage2> name=NC_008394:42569345..42573451 source=RiceChromosome01 preset=GeneLocation </gbrowseImage2>

Coding Sequence

<cdnaseq>atggtgaggctgccctacgtgaccgcgctgaccacgctcttcagctacggcctcctcttcgccttcggccagctccgcgacttcttccgcaggatcctcgacgctggcaaatccagcaatctcaagggctacgcgccgatttgccttgggctggaggatttctacacgcgccgcctctatctccgcatccaggactgttttggccggccaattgctagcgcaccagatgcttggtttgacgtggttgagcgttactcaaatgacagtaacaagacactgcatcgtaccacaaaaacatctaagtgccttaacttaggttcctacaactaccttggctttgccgcggcagatgaatactgcacccctcgtgttattgagtcactgaagaaatactctgctagtacttgcagtgtccgagtcgatgggggcaacactaagctgcatgtggaacttgaagagctggttgcaagatttgttggcaagcctgcagctattctttttggcatgggttatgtgacgaactctgcaatcattcctgccttggttgggaagggaggactcataattagtgactcattgaaccataactctatagtgaatggggctaggggttcaggagctactgttcgggtttttcaacataacaatcctgcacacttggaagaggtattgagagagcagattgcaggaggccagcctcgtacacacaggccgtggaagaagattattgtgattgttgagggaatatatagcatggagggggagctatgcaaactccctgaggttatagctgtctgcaagaaatataaggcttacacatatttagacgaggcacacagtattggagctgttggtaaaaccgggagaggtgtttgtgagctactaggtgtggatccagctgatgtcgatattatgatgggaacatttactaaatcatttggatcatgcggaggttacattgcagcatcaaaagagattattgatcatctgaagcacatatgccctgcccatatctatgcaacatccatgtcacctccagctgttcagcaggtcatttctgcaataaaagttatccttggtgaagatggatctaacagaggggccaagaagcttgctcagattcgagagaacagcaatttcttccgttcagagcttcagaaaatgggttttgaagttcttggagacaatgactcgccggtcatgcctatcatgctttacaatcctgctaaaatacctgcgttctcaagagagtgcctgaggcaacacgttgctgttgttactgttgcatttcctgctacaccactactgcttgccagagctaggatatgtatctcagcttcccactcaagggaagatcttattaaaggattggaggttatcagcaaagttggtgacctcgtgggaatcaaatacttcccagtggaacatgaaaagactgcatctgttgagaaactgaagaagcttcaatga</cdnaseq>

Protein Sequence

<aaseq>MVRLPYVTALTTLFSYGLLFAFGQLRDFFRRILDAGKSSNLKGY APICLGLEDFYTRRLYLRIQDCFGRPIASAPDAWFDVVERYSNDSNKTLHRTTKTSKC LNLGSYNYLGFAAADEYCTPRVIESLKKYSASTCSVRVDGGNTKLHVELEELVARFVG KPAAILFGMGYVTNSAIIPALVGKGGLIISDSLNHNSIVNGARGSGATVRVFQHNNPA HLEEVLREQIAGGQPRTHRPWKKIIVIVEGIYSMEGELCKLPEVIAVCKKYKAYTYLD EAHSIGAVGKTGRGVCELLGVDPADVDIMMGTFTKSFGSCGGYIAASKEIIDHLKHIC PAHIYATSMSPPAVQQVISAIKVILGEDGSNRGAKKLAQIRENSNFFRSELQKMGFEV LGDNDSPVMPIMLYNPAKIPAFSRECLRQHVAVVTVAFPATPLLLARARICISASHSR EDLIKGLEVISKVGDLVGIKYFPVEHEKTASVEKLKKLQ</aaseq>

Gene Sequence

<dnaseqindica>3617..3712#3402..3509#3109..3275#2908..3034#2665..2826#2334..2497#2149..2242#1948..2072#1709..1854#1515..1603#734..799#507..632#atctgttgcctaagactgtgactcactagcttgacacgaagaaaattcgaggaaaagaacacattgagcgatgcgatgcgatgtgatggcgatggcgtcatccgagcgccggtgaccggcgacggggactcctcctccgccgccgccgccgccatcatcgtcgtcgtcgttgccgtcgataatcctgacccagatccggctaattatattattacccgattccaatcagctgctaatcgagtggtaatctccatcacatcacatcacagcctcgttcgttcgtcgctgacggcacattattatatcctagtattatattattaattaatcgccgtcacctcgtcgccattgacgacctcttcctcttcttcctcctcctcctcttccactcccccacctcacctcgccgctcgccgtggcggcggctataaataccactccacctgctgccgtcgccgccgccatcgcctcccatcctcccgccgccgccgcctgcatcgacgacgatggtgaggctgccctacgtgaccgcgctgaccacgctcttcagctacggcctcctcttcgccttcggccagctccgcgacttcttccgcaggatcctcgacgctggcaaatccagcaatctcaaggttttttgattctctctctctcgttttctctttttttttctgatttttttttttggttatctctcgctcactcacgctgtcctccttggtgaattcgttagggctacgcgccgatttgccttgggctggaggatttctacacgcgccgcctctatctccgcatccaggtgaggttgcccttcccaccccccattgccacgatctccagagcagcagagttgactcatgaaaagtcgaatttattttcctcctttaatttggttggaagtgtcacgcgatcgtgtaatgttgggtttgtaaaggtggaaaggcataaaagctaatttagttattagtgatttgttcctttgcaatttggtggagtatgagaataaacaatagagtggcaattcgctttagcgtcctcctatgtactactagatcacatgatggagctttccatgtgaaagatgtatcatctgaagcactttgatcccatgaactagctgttgcagtggaattcacaatctttctcacttaaagtttacaattaatggctggaagaagtgaaactgctgtttcccttgagcatgctagtatgagtaggaactaatatctctagtagcaaagcgaactgtcactctatcgtggagtatgagaataaacaatagagtgacagttcacccagatattagatattacactaaggaactaataatatctctagtctgactgtatgcgtaggaagtaggtattagtgaaccatataggttgatcactcctgcaatggtaaattcagtctaactgtatcgtaagttcactgcttaaactctagaatgatgtattaatcttccttttgtttgtgtgtcgttattgactttgtgctgtcaattatcacggcaggactgttttggccggccaattgctagcgcaccagatgcttggtttgacgtggttgagcgttactcaaatgacagtaacaagacactgcagtatgtatttctcacatctgattcagcacctagttagcataagaaaatgctgaatattatcttaggatgcatgctattctctgatccaatgcttcttcaatgcagtcgtaccacaaaaacatctaagtgccttaacttaggttcctacaactaccttggctttgccgcggcagatgaatactgcacccctcgtgttattgagtcactgaagaaatactctgctagtacttgcagtgtccgagtcgatgggggtaggcacttatgttgctgctatagtttgttgccactgagttcttaaatgatttagtgtagtatataagcttacctgattcatacaatcttaggcaacactaagctgcatgtggaacttgaagagctggttgcaagatttgttggcaagcctgcagctattctttttggcatgggttatgtgacgaactctgcaatcattcctgccttggttgggaaggtccgtgatagagagactgccgtgttttctttctattcttttctacatcctggagctaatgtattattgattgcagggaggactcataattagtgactcattgaaccataactctatagtgaatggggctaggggttcaggagctactgttcgggtttttcaacataacagtaagctcactgataattgacagctactcttgcaagcgatgagctcaacaatggatcacaatacataatgcttccctttattttcttccagatcctgcacacttggaagaggtattgagagagcagattgcaggaggccagcctcgtacacacaggccgtggaagaagattattgtgattgttgagggaatatatagcatggagggggagctatgcaaactccctgaggttatagctgtctgcaagaaatataaggtttgagaatttcactcaccgacttatgctctttcttcagaccattcgtgtgggcatgtagacctatttactggcatataaaaacttcagctttcacctgctactaaaagagacagatgtttactgagtaattgagtattgactattgtacttaaccttctggataggcttacacatatttagacgaggcacacagtattggagctgttggtaaaaccgggagaggtgtttgtgagctactaggtgtggatccagctgatgtcgatattatgatgggaacatttactaaatcatttggatcatgcggaggttacattgcagcatcaaaagtatgaagaagattcacttgctatacttggctgagcactgtagttgataaatctgaccatggattatgctgtgtttatcaggagattattgatcatctgaagcacatatgccctgcccatatctatgcaacatccatgtcacctccagctgttcagcaggtcatttctgcaataaaagttatccttggtgaagatggatctaacagaggtatatcagaacttgttgatttcttatttcttctgtctttaggaaattcctaatgtaattattgttctaaataggggccaagaagcttgctcagattcgagagaacagcaatttcttccgttcagagcttcagaaaatgggttttgaagttcttggagacaatgactcgccggtcatgcctatcatgctttacaatcctgctaaaatacctgcgttctcaagagagtgcctgaggcaacacgtgagttttcaaaatatacctcacctaacgaataaatcatgctttagttttgaatccagtagcacacataatttcttcactgaaaattctgctgtttgactaatgtgacatgtttcataattctaggttgctgttgttactgttgcatttcctgctacaccactactgcttgccagagctaggatatgtatctcagcttcccactcaagggaagatcttattaaaggattggaggtaaagtccatcctcccgtcaatgctacgggcttcatggcttgttgcgacaagcttgatttagttgcaaaccacatacagttactaaatttcatgttgattgtttaggttatcagcaaagttggtgacctcgtgggaatcaaatacttcccagtggaacatgaaaagactgcatctgttgagaaactgaagaagcttcaatgaacacctacaaccagaagaaatatactgggtgatctaggcagtgtgccatgcctcggttcggctcatgtgcttcggacccttttgattttcctttgtttctgaagtggcttagatctgtacagcttgtattatcatccatcatagtccaaaacacaacacaatgatagacactgttttgtcgagttcagaggaagcaaaagtttcgctgttacagctctgaatcttgcgagtaaagtgtctgaaatcatgtagagactcttcctcttttgattttagcttcctttgtagatgcaacgtcagttgcatcgattgtgtgtgaagtaagcttcactcatagtgtgaggtctggttgctgtgatcaagtgattaagcgaaaaaatgttgttaaatctctg</dnaseqindica>

External Link(s)

NCBI Gene:Os01g0928800, RefSeq:Os01g0928800