Os01g0930800

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Revision as of 05:20, 25 June 2012 by 127.0.0.1 (talk) (Created page with "{{JaponicaGene| GeneName = Os01g0930800| Description = Glycoside hydrolase, family 1 protein| Version = NM_001051826.1 GI:115442022 GeneID:4326948| Length = 6054 bp| Defi...")
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Gene Name

Os01g0930800

Description

Glycoside hydrolase, family 1 protein

Version

NM_001051826.1 GI:115442022 GeneID:4326948

Length

6054 bp

Definition

Oryza sativa Japonica Group Os01g0930800, complete gene.

Source

Oryza sativa Japonica Group

 ORGANISM  Oryza sativa Japonica Group
           Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
           Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; BEP
           clade; Ehrhartoideae; Oryzeae; Oryza.
Chromosome

Chromosome 1

Location

Chromosome 1:42637140..42643193

Sequence Coding Region

42637140..42637274,42637422..42637485,42637821..42637879,42638090..42638165,42638263..42638334
,42640129..42640216,42640727..42640985,42641071..42641186,42641274..42641488
,42641935..42641963,42642181..42642282,42642397..42642485,42642598..42642832

Expression

GEO Profiles:Os01g0930800

Genome Context

<gbrowseImage1> name=NC_008394:42637140..42643193 source=RiceChromosome01 preset=GeneLocation </gbrowseImage1>

Gene Structure

<gbrowseImage2> name=NC_008394:42637140..42643193 source=RiceChromosome01 preset=GeneLocation </gbrowseImage2>

Coding Sequence

<cdnaseq>gctgcagccattgccgtcgtctacctctccctactgctgctgctgctgcatggcgcggcgccggcagttcttggctacacgcgaggggatttcccggaggatttcgtcttcggatccgccacctcgtcgtaccagtatgagggtggttttgatgaggatggtaggagcccaagcaactgggacatcttcactcatcaagggaaaatgccgggcagaagcacagctgatgtcgccgccgacgggtaccacaagtacaaagatgatttgaagctgatggttgacaccaacctagaggcttatagattatccatctcctggtcgaggattattccaaatgggaggggtgatgtcaatccaaaagggctacaatactacaatgacatcatagatgggctagtgaaaaatgggattcaagtccatatcatgctttatcagttggacctacctcaggttctggaagacgagtacgatggatggttgagtccgagaattttggaggatttcaaagcatatgcagatgtgtgcttcaaggagtttggagacagggttgcacactggattacaattgatgaacctaatgttgcttcaattgggtcttatgattccggacaattggcccctgggcgttgctctgatccttttggaataagaaaatgtacagtagggaactcatctgtggagccatatatagcagttcataacatgttactggcacatgcatcagtcacaaaactgtacagagaaaaataccaagtcgcaggaaaaggaattatcggcataagtgtttacacattttgggcttatccattaacaaattctactgtcgatttagaagcaacaaaaagatgtcaggactttattgtccactgggtactaagacccttggtattcggtgattacccacaagtaatgaagaacattgtcggttctcgccttccatccttcacaaaagcccaatctgaagatgtcaagggttctctagatttcattggaatgaatcactactactctctctatgtgaatgatcgtcctttgggtaagggcacacgcgactttgtagcggatatatcaatttactacagaggttccaagacagatccaccacctggtaaggccgctccaacatctattggacctgacccacaaggattgagattgatggtgcagtacctacaagaaacctatgggaaccttcccatttatatcctcgagaatggttatggatcaagcaatgacactgtccatgacaatgacagggttgattacctgaagagctatatagggagtatcctgactgcactaaggaatggcgccaacgtgaaaggctacttcgtgtggtcattcgtggacgtgttcgagtacctgacggggtacggccaatcgtacggcctctaccgcgtcgacttcgccgacgagtcgcggccgcggcaggcgaggctctccgctcgctggtactccggcttcctcaagaacagggagatggatgttgatcagagtgagctcgccatggcagcagcagagtcacgagctcagcaatga</cdnaseq>

Protein Sequence

<aaseq>AAAIAVVYLSLLLLLLHGAAPAVLGYTRGDFPEDFVFGSATSSY QYEGGFDEDGRSPSNWDIFTHQGKMPGRSTADVAADGYHKYKDDLKLMVDTNLEAYRL SISWSRIIPNGRGDVNPKGLQYYNDIIDGLVKNGIQVHIMLYQLDLPQVLEDEYDGWL SPRILEDFKAYADVCFKEFGDRVAHWITIDEPNVASIGSYDSGQLAPGRCSDPFGIRK CTVGNSSVEPYIAVHNMLLAHASVTKLYREKYQVAGKGIIGISVYTFWAYPLTNSTVD LEATKRCQDFIVHWVLRPLVFGDYPQVMKNIVGSRLPSFTKAQSEDVKGSLDFIGMNH YYSLYVNDRPLGKGTRDFVADISIYYRGSKTDPPPGKAAPTSIGPDPQGLRLMVQYLQ ETYGNLPIYILENGYGSSNDTVHDNDRVDYLKSYIGSILTALRNGANVKGYFVWSFVD VFEYLTGYGQSYGLYRVDFADESRPRQARLSARWYSGFLKNREMDVDQSELAMAAAES RAQQ</aaseq>

Gene Sequence

<dnaseqindica>1..135#283..346#682..740#951..1026#1124..1195#2990..3077#3588..3846#3932..4047#4135..4349#4796..4824#5042..5143#5258..5346#5459..5693#gctgcagccattgccgtcgtctacctctccctactgctgctgctgctgcatggcgcggcgccggcagttcttggctacacgcgaggggatttcccggaggatttcgtcttcggatccgccacctcgtcgtaccaggtagtagcaagtagcaactcacgcagcttcggttggagcgagatcttcttggctatcagctggttcctgttttcatttgagaatttctactgggctctatgaaaattctgattgttttgggtggtgaaatttttgtctgtctggtagtatgagggtggttttgatgaggatggtaggagcccaagcaactgggacatcttcactcatcaaggtaattaactgacaaggctgggattctgcccttgttttttttttttgacaaatactccctccgtttctaaatatttggcaccgttaaatttttaagcacatgtttgatcgttcgtcttattcaaaaacttttgtgaaatatgtaaaactatatgtatacataaaaatatatttaacaatgataaaaaataattaataattacttaaatttttttaataagacgaacggttaaatatgtttaaaaaagtcaacggcgacaaatatttaaaaacggatggagtatatgttattgtgtgacaaatatctaaaaatgatgttcttgtttgtgataacagggaaaatgccgggcagaagcacagctgatgtcgccgccgacgggtaccacaagtacaaagtatagctcaattttctctggatgtaaatcctcttatcaatttatctgctatattgtacctgaagatttgtggcttctgtctgatctgtcctcaactcaatgtctggaaggaaaaatattcagatgtcatggccaagtactttgatgttctgaaatgaaagctctaacctgttttaagttgttttgacatgatttattatgatggttcaggatgatttgaagctgatggttgacaccaacctagaggcttatagattatccatctcctggtcgaggattattccaagtatgagcatttcagaagattttttattgttgtacttgtatgcaagaattttcaacattatttctaatttcttgtttttgaaactaacgtttttcagatgggaggggtgatgtcaatccaaaagggctacaatactacaatgacatcatagatgggctagtgaaaaatggtatgcctatttgcattaacctatgaagttttggtgtattccctctctggtaccataattcttaatgttttggacaatgacatagtctccaaatatatgtttgactatgttttttttattataatactgaaaaaaatgcctgtgcgttgcaatgggtaaagacgtttttttagtcttatattaagaaatgatcaataaattaaaatattgggatcgctatgcattataattgaaaaagttaatgaaaatctttcctgggttttgagccgaaagccttccttcctttttttagccctagtgcagtccgctccctccatccgtttggcctgcttcccttcgacccagccacaagtggagctgtaagcccaacttcctcccgaagtcccgtacgcgtaagcccaactctctcccgaagatagtccctccctccgtttggcctgcttcccttcgacccagccacaagtggagccgtaaacccaactacctcccaaagtcccgtacgcgtaacccaactccctccagaagataatcctgtgcccgtacggttgccggagcaaatctccccatcaaattcggccgaatctttctcaatcacccaaaattgcttgagggttatcgatccactcgatcttctcttcctgtttttttccaatatcagagtgtaaaactcaggataaaaatgaccaggaaagattgccgtcatcatccaattgagggtttttgatccagattgccgtcatcatccaatattggttgagggttttcgatccactcgatctcttctttttgtttttttccaaaacataaaactcaggataaaacaaccgatgaagatcgctgtcatcatcggcaactcttagatggagattaaatctaacgaattacagacgaatcaaaagagaaaatcatcgaggaaatgatgggagaggagtagcgaattcatttttacaataaaattggaggaggaaacgcactatcaatatgacggcggcacggcgccagggttcaactcgggagacgtgcagctaaaacaaatcggattaaaaaaccggatgaaaaaaccaaaagtgcacaggaggtgcgtggtgaatagatcggattaaaaaaaccggacaagaaaaaccaagagccttagcgcgtgcgaaaaaaactctttcacgtgcaaaaaaaaatggaaaaaaatactggtgtcaataaaaaccaaacggacttttttttactggtgagaactttttttttccttttatttgggggagtcggataattttttttataacattgttttttttacggacggcttttttttatcgctttttgagtcggacttttttttacgtttttgcgtcgggttttttttattttttacagacaacgaaatttgctggttctttttgaggagtagagataaagattaaaactgaaacataaaattaaaaccgattcaaacacggatgacgtaccaaaatactggtaacaacatcttcaatttttataatagtagagatatataataaataaatatatttttacttttattatagtactttgtaagacatatatattgttctagtgactttaaactaaatatttataaagctattgatagtcaaaattataaaagtttgaccttaatcatatctgaaacgtcaagaattatagaaccggagggagtagtggtgaatggtgacaaaacaccttttacaatctaaaacttaaataatggaaattcgtttcacacattttgacctttttgttgcactgttttaaaccctatggcattttcaatttcttcagggattcaagtccatatcatgctttatcagttggacctacctcaggttctggaagacgagtacgatggatggttgagtccgagaattttgtaagaccccttaactttctcttgtgctgatagtattgctctgaagttcatcttgtccaattctagttcgtaaactttgaacattaataactaaaattataagcatatttggcatgtaaaactatataaaaaaatatacttcaatgcatttttataatatttttttgaacgacccacactacaaatattatataatattggtcttgtagacattaacaaaatagtttatgagtactaaccgtcaaagtttatacaatttgactatttgactttatagtacgccttataaaaacaaatagagggagtatataaacaaacttgttgggcacaacaaagtactcaatgaattaacggctttacaaaaaactaaaagagatgctccaggggcccagcgacagggaattgagcgaattgatcataggatgttatagaaatgatcacaagttacctagtgatatttcatagagagtggacctgaaatcctaatctccagtgtcactgcaaacgcagggaggatttcaaagcatatgcagatgtgtgcttcaaggagtttggagacagggttgcacactggattacaattgatgaacctaatgttgcttcaattgggtcttatgattccggacaattggcccctgggcgttgctctgatccttttggaataagaaaatgtacagtagggaactcatctgtggagccatatatagcagttcataacatgttactggcacatgcatcagtcacaaaactgtacagagaaaaataccaagtgagttatcatgtattcagaattagtagtagcattgttcaattggccaaatctttatgtgttcataaaagagttttacatataggtcgcaggaaaaggaattatcggcataagtgtttacacattttgggcttatccattaacaaattctactgtcgatttagaagcaacaaaaagatgtcaggactttattgtccactggtatgtcatgttgactctttatgtttgcatctgaatattaatgtgaaaaaatagatggggcaaacagagttgtggtgctctttctagggtactaagacccttggtattcggtgattacccacaagtaatgaagaacattgtcggttctcgccttccatccttcacaaaagcccaatctgaagatgtcaagggttctctagatttcattggaatgaatcactactactctctctatgtgaatgatcgtcctttgggtaagggcacacgcgactttgtagcggatatatcaatttactacagaggtaagaacttttctgtcgatgaaggcattattggcttattgctgcactgcacttccccagtcataggagcaggaatttttggtacatttgtctagcggtaatatcttcctttcaaagaactactagcaacaacacataatcaaatactcctacaatcttatgaaatctactcattccgtttcatattataagactttctagcattgcctatattcatatatatgttaataaatctagacatatatatgtgtttagatttattaacatcgatatgaatatgagcaatgctagaaagtcttataatatgaaatggggggagtatgtatatatatgtatttagatttattaacatctatataaatatgagcaatgctagaaagtcttataatatgaaatggggggagtatgtagcatgtgcaaaatctaatcaaatccctctgattcaggttccaagacagatccaccacctggtaaggtatggtttcccatcgatgtctgttagatatgctgctgtgttgaactgtttcaaacctgaaaaataccaaaataggaattttcatctaattcaacatattaaaagcaaatatgcaatacacacttaaaaaagataatacaatttggaaggaacaaaattgcacccattattcgagctgtgagttgtgacagatcttattttttattgcggagcgcaggccgctccaacatctattggacctgacccacaaggattgagattgatggtgcagtacctacaagaaacctatgggaaccttcccatttatatcctcgagaatggcaagttatttgttgtggttcagttactccactgaaaatttgccaatgtttatgcagacttgtactgttcttttttaccttacatatttggtttctcttcgcccttctcttcaggttatggatcaagcaatgacactgtccatgacaatgacagggttgattacctgaagagctatatagggagtatcctgactgcactaaggtgaaaacatcgccaaaaagaggaaacagatcggataattttcaggcaaatgctttgcagtttgctctgaaattcttcagacattttgatcaggaagaactcctctctgcaggaatggcgccaacgtgaaaggctacttcgtgtggtcattcgtggacgtgttcgagtacctgacggggtacggccaatcgtacggcctctaccgcgtcgacttcgccgacgagtcgcggccgcggcaggcgaggctctccgctcgctggtactccggcttcctcaagaacagggagatggatgttgatcagagtgagctcgccatggcagcagcagagtcacgagctcagcaatgagttgcatacacctgatttggcagtaacattatagcaagagttaaaattcttgaaagacattgtagcaagagttaagcagagaggaagtcacctggtctggctctctgtcacacatatatttactcaggacttgctcctgcacacgaaatacagattatgtggtataaaacaatgtcatcaaatattatgagatttttttcgtaaccatcgtttggtatctatactctatagtacaattttaatagattccaatggtggtggtgagtgatgaattagccacccacaaccaccaactccctgataagtggggtccttgttgtcagggtgtatgtgacttccaaattaacatatgaaagtgatg</dnaseqindica>

External Link(s)

NCBI Gene:Os01g0930800, RefSeq:Os01g0930800