Os01g0936800

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Revision as of 05:21, 25 June 2012 by 127.0.0.1 (talk) (Created page with "{{JaponicaGene| GeneName = Os01g0936800| Description = PapD-like domain containing protein| Version = NM_001051864.1 GI:115442098 GeneID:4326527| Length = 5000 bp| Defini...")
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Gene Name

Os01g0936800

Description

PapD-like domain containing protein

Version

NM_001051864.1 GI:115442098 GeneID:4326527

Length

5000 bp

Definition

Oryza sativa Japonica Group Os01g0936800, complete gene.

Source

Oryza sativa Japonica Group

 ORGANISM  Oryza sativa Japonica Group
           Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
           Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; BEP
           clade; Ehrhartoideae; Oryzeae; Oryza.
Chromosome

Chromosome 1

Location

Chromosome 1:42912063..42917062

Sequence Coding Region

42912492..42912602,42912693..42912770,42912915..42912977,42913522..42914094,42914179..42914294
,42914902..42914983,42915519..42915589,42916803..42916851

Expression

GEO Profiles:Os01g0936800

Genome Context

<gbrowseImage1> name=NC_008394:42912063..42917062 source=RiceChromosome01 preset=GeneLocation </gbrowseImage1>

Gene Structure

<gbrowseImage2> name=NC_008394:42912063..42917062 source=RiceChromosome01 preset=GeneLocation </gbrowseImage2>

Coding Sequence

<cdnaseq>atgggccaggacctcgccgagatccaccctcgcgagctccagttcacctttgaggtgaagaagcaaagttcatgtactgtccatcttgtcaacaaatccaatgaatatgtcgcattcaaggttaaaacaacatcacctaaaaggtattgtgttcgaccaaacactggagtcatccttccaaggtcaacatgtgatttcacagttaccatgcaagcacaacgtactgctccaccagacatgcaattaaaagacaagtttttggttcagacaacagttgtcccttatggaacatcagatgaggaccttgttccttcttatttttctaaagaaagtggcagatatatcgaggaaagtaaattgagggttgttcttgttagtgcatctcatccttttggagagcagccaattaatggaattccaaacactgaggcagctgttgaggttccttcattaaaggacacgttgaacattaagaatgaaattccagttgcagagaaagaggttcattcccctctggaagaagacccagttgttattcctgcacccccttaccctgtcaaggaggctccaattctcagagaagttcctgtgcatatttcccctgtcagggagacttcattcctgagagaagttcctgcacccgtatccccagtcaaggagactccaatcctgagagaagttcctacaccattgaaggagacacctgttatattgacagaatctccaccccctccaacagatacctcttccattactgtcgaatctctccatcctttcgaacaaaacctagcaagtttgaaggaatctcctctagaagaaactcttccaaaagcagctgtcgtgttaagtgagcaaggggctgtcaatgtgcagagtcgtcaactatgccatgtaacggaagatgttcagaacctgaagtcaaagctcaatggtctcgaagtaaaattggaagaggctgaaaaaatgataataaagctgagagaagagagcagaactaccacccaggagcgggataagttacagcaagaaatgatgtttctacgaaagaagggaacaccaaggaatcaagttggtttccccttgctgtttgtggtttatgtggcacttcttggtacttctctgggttacctcctgcgcttatga</cdnaseq>

Protein Sequence

<aaseq>MGQDLAEIHPRELQFTFEVKKQSSCTVHLVNKSNEYVAFKVKTT SPKRYCVRPNTGVILPRSTCDFTVTMQAQRTAPPDMQLKDKFLVQTTVVPYGTSDEDL VPSYFSKESGRYIEESKLRVVLVSASHPFGEQPINGIPNTEAAVEVPSLKDTLNIKNE IPVAEKEVHSPLEEDPVVIPAPPYPVKEAPILREVPVHISPVRETSFLREVPAPVSPV KETPILREVPTPLKETPVILTESPPPPTDTSSITVESLHPFEQNLASLKESPLEETLP KAAVVLSEQGAVNVQSRQLCHVTEDVQNLKSKLNGLEVKLEEAEKMIIKLREESRTTT QERDKLQQEMMFLRKKGTPRNQVGFPLLFVVYVALLGTSLGYLLRL</aaseq>

Gene Sequence

<dnaseqindica>4461..4571#4293..4370#4086..4148#2969..3541#2769..2884#2080..2161#1474..1544#212..260#gtcgtcttcgacttcactccaactccacctccacctccaccacccctctctcgaagccatcgccgcctgtctctcctctccagctcgcccggtcagagtccgcgggggattcgattgattggtagctagctaggcttccgcgcgcggcgacccaacgtcggtggaggcggtgctgaaggccgggcggcgtctcgttcgtggtgcggtggagatgggccaggacctcgccgagatccaccctcgcgagctccagttcacctgtaagtcccccccgctgccacgccaccgccacggcgccacgcctcaccaccccctagatagagagtggagtagagagtaattccgatccgtctcgcgttaacgggcgaatcgacttcaatcgagtggattccgtgtatgtgtgtcgtggtgtgcgacttccctgcctgtttcttcgcttcgctgtagtattactttgtatcgtgccgggtattttcgccctcagtggaatttaatttgtagcctctgttgattggaattggttccagtattagtgttccaaaactatttcccctcgtttggactgatcaacaggtttaagggtcttagcgattttcatttcaaattagtgggaattttcgttccactctggtttctatttttttcatttcttagtggttttgattttcgtttcactgtcattttttaatttttcttgtctgaatggttttgattctgtttagaggtgtaggtacttgcagaattttttttgttagattattacagtgttaagtgaagaagcaatgagtgattttgtttttactgttaacttttctctaggttacttagataacattctacaaacatggctccggagtttggaattttctgtaaacttttgttttggaattttttaaaggctgcttttttagtgggctgctcctttttctgttcgtttggttactgacaggtcgatttcgtggtgcgagtggttgtaaagtctgatgtctgtgtgtgggagagggatctgattgcttgtctaattggcttacctggattggatgcggttgcagtaactactgagaatggactgatacagcgatgcacatgctaacaatcataaaaggagggagtggtggtgttagtttttaccttttagtcatgcatcactcaaaagatcatcatgtgctgataaaagaggaaggggagtgaaactgaaaattatcgtatcctagttctgcaggtggttttcttatgaactgtgcaatttagagtacttgtcaaatttgcacatgattaaattggtctttgcaattttcattggatgaacaagacggtctcgtactggttcctaccacacctgtatttgaaactacaacattcagccatataattgaaatgtgtttaactgctgtacagtataggatacaaaacacattccgtctcaaagttttgaatgataatctgacttggtatctcatttattattggcagttgaggtgaagaagcaaagttcatgtactgtccatcttgtcaacaaatccaatgaatatgtcgcattcaaggtttgtcagtgctctcaaagacaaattcaaatgccgcttgtttttatgttaagtatagctcctgatggtgtactgtgtacattgtgctatctaaacattgtgtatcctttcctaggtaattgtaaccatgaagttgtccatcagtactattattttgaatgcggctatggccttaattcttgaataccaaatgggcatatcaaagaatacatattaatttgtctgctactacatacaactacttttatttttctaaatttaaatgtctttttatggtattgtacaagaattatatagtgatgctagatacatatttatatggtaacctaacgagaaggctggaaaattgtatttttaatgcaaggtatttcctattgtttttaaatgccatttctgatgacactaaacttagatattttgttttctgaatattatgtattctttaatcgcttttatgctcaatcaaaggatgataatttttgccgtttgagcatctaataggactatgtctgatattgcccttcaaatttgttaggttaaaacaacatcacctaaaaggtattgtgttcgaccaaacactggagtcatccttccaaggtcaacatgtgatttcacaggtatgttcagtagctcactactgcatttactcactggcaatattgttttgtgtatgcaaggattattgcaccggagatatatttacttaccttgttgatctatattagcatatactccctccgtttcaggttataagacattttgactaagtttgtagaaaaaattagtaacattttcaacccaagacaaatttattatgaaattatattcaattattgatttgatgaaactaatttagtattataaatattactatatttgtctataaacttagtcaaacgtaaaacagtttgactttgaccaaagtcaaaatgtcttataacttgaaatggagggagtacgataaagtgcattttgtatgctcattttggaaagtcatgcaagatagccattttcattttctgtggaatctatataaagctttctaggaatgaactcattcctagttgaactgtgcagtaaagaagcacagtgtgctttcttttgggggagagtaattattagacagatgtttcttatcgtttattggttctgttataatttttaccaatcagttaaattgctcttttctcttattgattcttttctttactcgtctgaatgaagttaccatgcaagcacaacgtactgctccaccagacatgcaattaaaagacaagtttttggttcagacaacagttgtcccttatggaacatcagatgaggaccttgttccttcttatgtaagcacataagaatatgacccccttttttttggaaagagctgtacacatggtgttcttctaactcatcatttttttttacagttttctaaagaaagtggcagatatatcgaggaaagtaaattgagggttgttcttgttagtgcatctcatccttttggagagcagccaattaatggaattccaaacactgaggcagctgttgaggttccttcattaaaggacacgttgaacattaagaatgaaattccagttgcagagaaagaggttcattcccctctggaagaagacccagttgttattcctgcacccccttaccctgtcaaggaggctccaattctcagagaagttcctgtgcatatttcccctgtcagggagacttcattcctgagagaagttcctgcacccgtatccccagtcaaggagactccaatcctgagagaagttcctacaccattgaaggagacacctgttatattgacagaatctccaccccctccaacagatacctcttccattactgtcgaatctctccatcctttcgaacaaaacctagcaagtttgaaggaatctcctctagaagaaactcttccaaaagcagctgtcgtgttaagtgagcaaggggctgtcaatgtgcagagtcgtcaactatgccatgtaagcatttcctctactattttcacatgccccttaagtggagtataaggcaaaaatgagttgagtttctggaggcctgcagtgctagtctttgactgaattttagctggtcagggttcttgctaaccatctcaattggaaagtctattagtggctagatttttacaaaattccacctattcctggttaaaatgtctccacttagttttcaaacaccatggcataagaatgcttacttgttctgactattgattcgaattttggtcacatttgccaatcgtccattgcatccaacatcctttaattggtcatacacaacaagtgtatttcttgaaataagtattttatattttgtgattcttctatcttccattaaactggaagtagctttaatgaaataaatatgcaactagatacaatgcactaaagctaagctgcacttatagagatcttcaaattacatatttttctcactacatttccgatctgtctcttaaacaatcttcccactagttttattgaagttgctctgtattttggacaggtaacggaagatgttcagaacctgaagtcaaagctcaatggtctcgaagtaaaattggaagaggtaatattttggacaggacaaatcaatagttcagaatgagatcctcctgaaacatggagcttataatgcttgataaactaagattttaatcttatattccagataatactttctgaagtgaaacacaaactttctgatttgcaggctgaaaaaatgataataaagctgagagaagagagcagaactaccacccaggagcgggataagttacagcaagaaatggtatgactcaaattccatcctgaaaccactggtcatatactatgtttcatgcatgacatgtctactaattctgatgcatggcttggctagatgtttctacgaaagaagggaacaccaaggaatcaagttggtttccccttgctgtttgtggtttatgtggcacttcttggtacttctctgggttacctcctgcgcttatgaggtcaagttcttccaaaaacccatcagctggacacttcagtttgtcacaagaattggagggcagctacgcatcaatcttgaaaggggagcattccttagcatcgtatttcactagccattatggttttgcatataacaaaggtaccaattgcctgcgtgcatagaacagcttttacatctgtacagaaccgtccaagagatgctgctggctcagtagactaacccgggatttcttttctctcccctcactggggtttttatagtgtgttggattcggttctttcttagaatcggtgcagttttcttcgttgttttccttttcacctgggctggtgtcagtttgaaaactgtcaggttgtatttgatttgacatttgtaaggcatcaacgaggtaccaaagcagaaccatcattatatcgtcgagttgct</dnaseqindica>

External Link(s)

NCBI Gene:Os01g0936800, RefSeq:Os01g0936800