Os01g0938200

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Revision as of 05:21, 25 June 2012 by 127.0.0.1 (talk) (Created page with "{{JaponicaGene| GeneName = Os01g0938200| Description = Similar to RNA-binding protein BRUNOL5 (Fragment)| Version = NM_001051875.1 GI:115442120 GeneID:4326538| Length = 55...")
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Gene Name

Os01g0938200

Description

Similar to RNA-binding protein BRUNOL5 (Fragment)

Version

NM_001051875.1 GI:115442120 GeneID:4326538

Length

5554 bp

Definition

Oryza sativa Japonica Group Os01g0938200, complete gene.

Source

Oryza sativa Japonica Group

 ORGANISM  Oryza sativa Japonica Group
           Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
           Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; BEP
           clade; Ehrhartoideae; Oryzeae; Oryza.
Chromosome

Chromosome 1

Location

Chromosome 1:42988197..42993750

Sequence Coding Region

42988372..42988615,42989716..42989798,42991084..42991135,42991217..42991342,42991455..42991537
,42991796..42991978,42992389..42992725,42993095..42993238,42993342..42993472

Expression

GEO Profiles:Os01g0938200

Genome Context

<gbrowseImage1> name=NC_008394:42988197..42993750 source=RiceChromosome01 preset=GeneLocation </gbrowseImage1>

Gene Structure

<gbrowseImage2> name=NC_008394:42988197..42993750 source=RiceChromosome01 preset=GeneLocation </gbrowseImage2>

Coding Sequence

<cdnaseq>atggcggaggagggcgacaaggccacggcggcggcggaggcggggggaggagcagccgctaccgccgccgctggtggtggtggtgggggtgggggtggtggagcggaggaggagagcgtgaagctgttcgtggggcaggtgccgaagcacatgacggaggcggagctgctcgccatgttccaggaggtggccatcgtcgacgaggtcaccgtcatcaaggacaaggccaccaaggcctcgcgagggtgctgcttcctcatatgcccctcgagggaagaggctgacaaggcagtgaacgcttaccacaataagcacacacttcctggggcatcaagtcctttacaagtaaaatatgctgatggagagttggagagactagaacacaagctttttattggaatgcttccaaaaaatgtaacggacaccgaattgactgatttattttccaaatatggaaatatcaaggatttacagattttaaggggttcacaacaaacaagtaaagctggctgtgcattccttaaatatgaaacaaaggagcaagcagtggcagctattgaggctctaaatgggaagcacaaaatagagggctctagtgtgccgttggttgtcaaatgggccgatacagaaaaggaaaggcaggcccgaaaagcacaaaaggctcaattgcaatcatctaatatgcctagcgcgagtcctatgcaacaatcttcattatttggggctttacagatgggatatatgcctcaatataatggatttggctatcagccaccagggacatacggacttatgcagtaccccttatctcctatgcagaatcaagccacattcccaaacatggttcaacctgttaatcaaggaaactctatacgaggagtcaaccctgaactgtcccctaattcagttcctagatcattcaacgcaatgcagttaagcagcccttatccacctgtacctggtgtgcagtatgctggatcctaccctggtggtctcatgaataatcgtcctttcgggaattcgttcagttcgattaaagttccaattgtaaatgcaaattctcctgcatcttctagtcccagtagcaatcctggtggccaaatagaaggtcctccaggagctaatctatttatctatcatatcccacaagattatggggaccaagacctttccaatgcattccagaggttcggtagagtactaagtgctaaggtttttgtagacaaagcaacgggttccagcaaatgctttggttttgtaagctacgattctcctgcttccgcacaggcagccattggtgtgatgaacggtttccaattaggcagtaaaaaactcaaagtacaactcaagagagacaactccaagcacagtaaacccttttga</cdnaseq>

Protein Sequence

<aaseq>MAEEGDKATAAAEAGGGAAATAAAGGGGGGGGGGAEEESVKLFV GQVPKHMTEAELLAMFQEVAIVDEVTVIKDKATKASRGCCFLICPSREEADKAVNAYH NKHTLPGASSPLQVKYADGELERLEHKLFIGMLPKNVTDTELTDLFSKYGNIKDLQIL RGSQQTSKAGCAFLKYETKEQAVAAIEALNGKHKIEGSSVPLVVKWADTEKERQARKA QKAQLQSSNMPSASPMQQSSLFGALQMGYMPQYNGFGYQPPGTYGLMQYPLSPMQNQA TFPNMVQPVNQGNSIRGVNPELSPNSVPRSFNAMQLSSPYPPVPGVQYAGSYPGGLMN NRPFGNSFSSIKVPIVNANSPASSSPSSNPGGQIEGPPGANLFIYHIPQDYGDQDLSN AFQRFGRVLSAKVFVDKATGSSKCFGFVSYDSPASAQAAIGVMNGFQLGSKKLKVQLK RDNSKHSKPF</aaseq>

Gene Sequence

<dnaseqindica>176..419#1520..1602#2888..2939#3021..3146#3259..3341#3600..3782#4193..4529#4899..5042#5146..5276#atctccaccaccacctaaacccacaaaaaactaaaccagaaaaccgcttaaccgcaagcgccgaggcggagagcggaggcagacgcagacgcagcagccgagcacgcggcgacgcccacgcccacgcacacagctcggcttcccggcggaaaccctagcgggcgggcgggccccaatggcggaggagggcgacaaggccacggcggcggcggaggcggggggaggagcagccgctaccgccgccgctggtggtggtggtgggggtgggggtggtggagcggaggaggagagcgtgaagctgttcgtggggcaggtgccgaagcacatgacggaggcggagctgctcgccatgttccaggaggtggccatcgtcgacgaggtcaccgtcatcaaggacaaggccaccaaggcctcgcgaggtgcggatccgtacgccccggatctgggctcgcgggcgcttgctcgtgccccggggctcgatttggggggcaatgcctgcggggaattcgagctccgcggctgtttgttccccccctttgctttgcttcttccgcgcgtgcttctgtggcgattgttccgcgcaatgtcgtcggaggaatgaattcgagcgtttttggctggattttcgtgtgcttcttgattttagccttgatatgctccattgctggagcgagatctcgcgccgaattaatctggttggtggggggcgttggtggggctcttagcttgaattttgagtggtattggtctgaattgcgtttcatcagtcgaatttgtccaacgccgtttcgaatttcacctttctgctttgtttttcaaaatgcggttttatcggaacgtttatcggcgttttttttctttgggtgcgtagcttgaatttgtttagggagcaatgctgtgccgcaaatgtgctttctacgagtacaaatcaggccacttattttctcttaccaccagtaattttggcacttcttactcgagctttggagcatggaacttagtttggatcgggcttcagaatatcataagacgagctttgttcggacttctgtttggctattttgagctttgctcggacttcagaaatgcaagatggtcatgcatttttttatattatgcgagataactaagttattacgttgttcaatgatttattctaatttgagcgaactagaaatgtgatgatagtttgggtttttacccgattcggtgaattttcacttctttatgttagcattgtgtagagtagtcacttttcaatgcttcatagaccctagagatcgtgctacaaatggaaacttgggtggagcagacatcgctgcaaaattagaaggcatatgctgcatccttcttatttgggacattgacaagccagatttgctccgcttgtgcttttctctttgtctctgtagccccatgccacctgatagcctttcttcttcttttttttctatttcttcgctatatctgtctgcctctcaggttgatgctaattttggatgtcatgaacttaatgcagggtgctgcttcctcatatgcccctcgagggaagaggctgacaaggcagtgaacgcttaccacaataagcacacacttcctggggtacgtgatcgttggaatatattacaatgctaaagttgaattcatgctgttttccttagttgaattgttgcaagctgatcccgtgtttatggggtgaaaattacatgtgattttgaaattccataatctggttgccaaggaacagcattggaagcttgtgcatgtatttggctgtttggtgggaccaaaatgaaatctgtagtgggagtgcggggcactggtgaaatttgacttgggtagggggtctagaatttggaatggtcatgctaaatatctgtggtgggtggtctaaaaatcactggacatggattatccttatttttcagtcaataagtaacatcattattctccacagttctgctgcaaggctgctgatatgcatgtattagtttcagtacgttttgtttcatggctagcatagttaacgagtaatctgattcaaggatgtatatttggttggaaaacaaaaacattacacttaccctcaggcagggctaaacttcgagccacaccactatgaacaagtagtgggtgtgcttggtctttgacagcaataaagttggatctataggaaatttaacctgtcaacagctgcatgatggtctatcttactctcatagcggcacacctaacaaaagttagatcaccaatctggccatcacacttttgtacccatcctgtatggaaatgaactgattgtagcttcagttttgtagcatacctaactgaggtcccaactcccaactgaccaaacaatatggactgagtgttatgattaggatttgaatagaacttttgagatagggacaaaatctcaaactaattctggtgcatactctggtggaccaaattctttcttcggaatgaaaaagcttcatgatttcactagttttggaaacttttaaaaaattatgtaggttgatgttactttcacagttcaggtgtcttcacccagttaatcacagaataagactggacatctaatcccactcccaatcagatgagtaatgttgagacgtgaaacatggatgatgatagaaacaaactataaagtcttggaagttaggactttgtcctaatgttggacaaaagttggagtgcatatgagtgtggtagttggtaatcactgactttgggagccagcaaggcacatttacgtgacattttttttctatagtgttaatagctactgttgtgacaccttgttcatgaatagctgccaaacattcccagttgcttctttcttttatctgatgacaatcttcgttttctttcatcaattcaggcatcaagtcctttacaagtaaaatatgctgatggagagttggagagactaggtatgattgccctttacatagaactgttctttttgccattgattttattgcactcatgcttgtacttgctatgatctccagaacacaagctttttattggaatgcttccaaaaaatgtaacggacaccgaattgactgatttattttccaaatatggaaatatcaaggatttacagattttaaggggttcacaacaaacaagtaaaggtgagatctggtgaataacctattttcctaaccatttagagctagaagcactggttgactctggaactttacaatacctaatgtttttgttaaattaactgtgttattgcagctggctgtgcattccttaaatatgaaacaaaggagcaagcagtggcagctattgaggctctaaatgggaagcacaaaatagaggtttgccagaaattagttagaatagcagaaaaattcttagtggttattgaaatgtactgcaattcacacatgaacatgatccatagctctacttagtcatgagtctgatacacataaacagtcaaagctaaagacactctctgctattgcatttatttgataccttgtgtctgcattatattatccagttacatcccttctcaaaccccacgttatttttcatgaatatattataatctcttctgatttatttgttagggctctagtgtgccgttggttgtcaaatgggccgatacagaaaaggaaaggcaggcccgaaaagcacaaaaggctcaattgcaatcatctaatatgcctagcgcgagtcctatgcaacaatcttcattatttggggctttacagatgggatatatgcctcaatataatggatttggctatcaggtgacttgtgcttttctcttaatatttttttttacatcatacattgtcgtatacttagcacaagaactatattagtcatattcttctttaaaaatattatttgtcacctgaaaacattatcaggatatgccccaataataatttggttcacgttgtttcatggccactatttggtactgctacacacataaatggtggctcttgccatattcagtgtaaaaggggcatttgtccaaactgctaaaattcttcatcttcgttcttcattatattgttggtactttctcacagaagaaaaattttgtcggtacttcaaaccctagcattgagcttcaagagagtgcttaagatttttttttaatgcacacatattttgcttggaataagtctgattttgttttcttttgcagccaccagggacatacggacttatgcagtaccccttatctcctatgcagaatcaagccacattcccaaacatggttcaacctgttaatcaaggaaactctatacgaggagtcaaccctgaactgtcccctaattcagttcctagatcattcaacgcaatgcagttaagcagcccttatccacctgtacctggtgtgcagtatgctggatcctaccctggtggtctcatgaataatcgtcctttcgggaattcgttcagttcgattaaagttccaattgtaaatgcaaattctcctgcatcttctagtcccagtagcaatcctggtggccaaatagaaggttagacacattctacttacacctttagcctttgtgctggagaaaacaccgttttcttccaagatgttatctggaaaaagctgcaaccttagcaatacattttccgagaaaaatcatgtggcttttgattctataccatgtacgttatcctgaaatgtttataatgtgcttctgtacatgaggaatccaaatgcatataaggacatcagagttcaggagatgaacaaaaatctaacaaagatattgaagaatggttagctacctgattgtgctaactaatactctctctttctgaatatatgtttactatcagtgtagctgtcattttgaagtccatcatgttttaaagactagtcttcatgcttacaggtcctccaggagctaatctatttatctatcatatcccacaagattatggggaccaagacctttccaatgcattccagaggttcggtagagtactaagtgctaaggtttttgtagacaaagcaacgggttccagcaaatgctttggtaatctctctctctctctctctctctctctctcacacacacacacacacacacacacacacattttgcttatagtctgctaattgttttctaacgggtgcaggttttgtaagctacgattctcctgcttccgcacaggcagccattggtgtgatgaacggtttccaattaggcagtaaaaaactcaaagtacaactcaagagagacaactccaagcacagtaaacccttttgacgaaaactatgatgaccacgcgatcaggttcctggtacatatttgtcagataattgatcgttgaattgtttgctctggccgcagcattgggagcttcgtgtatcttctttgttcaattcacattcttgaacactgttacgtcgtgtaatttactgcagcctagtggtagaatttgtttcatcagacccttgtacatcagaagtcagattcattcaattgtggacattttctcctgacagtgattccggtttctcattgacacgattccggactcaccc</dnaseqindica>

External Link(s)

NCBI Gene:Os01g0938200, RefSeq:Os01g0938200