Os01g0948100

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Revision as of 05:22, 25 June 2012 by 127.0.0.1 (talk) (Created page with "{{JaponicaGene| GeneName = Os01g0948100| Description = ERCC4 domain containing protein| Version = NM_001051925.1 GI:115442220 GeneID:4325837| Length = 7500 bp| Definition...")
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Gene Name

Os01g0948100

Description

ERCC4 domain containing protein

Version

NM_001051925.1 GI:115442220 GeneID:4325837

Length

7500 bp

Definition

Oryza sativa Japonica Group Os01g0948100, complete gene.

Source

Oryza sativa Japonica Group

 ORGANISM  Oryza sativa Japonica Group
           Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
           Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; BEP
           clade; Ehrhartoideae; Oryzeae; Oryza.
Chromosome

Chromosome 1

Location

Chromosome 1:43486037..43493536

Sequence Coding Region

43486158..43486360,43486874..43486971,43487102..43487180,43487333..43487419,43487509..43487634
,43488737..43489028,43489466..43489541,43489622..43489678,43489783..43489880
,43490011..43490153,43491010..43491067,43491543..43491701,43492236..43492315
,43492466..43492700,43492805..43492891,43493095..43493199

Expression

GEO Profiles:Os01g0948100

Genome Context

<gbrowseImage1> name=NC_008394:43486037..43493536 source=RiceChromosome01 preset=GeneLocation </gbrowseImage1>

Gene Structure

<gbrowseImage2> name=NC_008394:43486037..43493536 source=RiceChromosome01 preset=GeneLocation </gbrowseImage2>

Coding Sequence

<cdnaseq>atggcgccggaggcgaggcaactcaaggtgcacctccgggagaacgaggcggtcgcgcaatgcgtcctggagaagtggcgctcgatggaggagaagccgggcggcctcaaggagaacctggctcacacgctctacaaatcctaccgcaacgtctgcgccgccaaggagcccatccgatccctcaaggacctgtatcagatcaagggcgttgggaaatgggtcataaggcaactgaaaggatcctttccagagtctagtccagatttatctcccccggaaagtaatgcagcaggagaaaaggggaagaaagcaggagggtcaaagcgttatgtgccacagaagaattctgctgcttacgcgatactgatcacgctccatagggaaacaatcaatgggaagagtcatatgaagaagcaagagcttattgacgccactgaagcaagtggcctgtcacgaagtgcaattggtccagacaaaagtaaagcaaaaccaggggcttttgcaagttctcagaaggactggtacactggatggagctgcatgaaaacattgacatctaaaggactggttgcaaagtccggtaaccctgcaaagtatatgataactgaagaagggaaatcgactgctcttgaatgtctctcaaggtctgggttagatgatcatgcagcacctttggtgataaacagtgctcccgacacatctaatgcaagtcataagttgaataatatttgcatgacttcttttgttgagacatcatccggaccttctagggcaattggtagacccaaaacatctattgccaaccctgccactaagacatcaccagaagtgacatatttgacaagtcaagaatcactcaattacaactctgatgttagaactgctgagaactgtgctgaagaaatcattcttagtgactcagattctgaagaattatatacagagaactatcctctaataggttctgaagaatttactgagagggttgcccctccaatattgaatgcaagcaactctggcaagactactacaaattacagattctcagactgttcagcttctatttctcctcgttcgtctgaaggaacatttgagatgcagtcttctagtacaatgggtattgctgaattcaatatgctggacaatgatactgtatgtatggacaattctatactagccatgccacctcggcgatccagtaaaaattttcttgaagattatgaagttgtgttgatattggatgatcgtgaaaattttgggggtcgttcaagaaaaactgttgataacatacattcacaatttcgtgtacctgtagagataaagcatttgcctgttggggatggtatttggattgctcgtgatagaaagcttcacacagagtatgttcttgatttcattgttgaaaggaagaatgttgcagatttgtgtagttcaatcacagacaaccgatacaaagatcagaagttaaggctcaagaaatgtggcctaaggaagctgatatatctggttgaaggtgatccaaaccctcttgatacatcagaaaggatcaaaactgcctgcttcaccactgaaattcttgaaggatttgatgtccagagaacccctgggtatgctgagactgtaaggacatatggcaaccttactcattcaataaccgaatactacagcacacacttttctactggtgctaatacttctcaagtttgcctgacctatgatgagtttacgaagaagtgtgatgaccttaagaagataactgtgagtgatgtattcgcccttcaacttatgcaggtgccacaagtgacagaagaagctgcacttgctgtgatagggctctatccaactcttttctcacttgctaaggcgtactctatgcttgatggtgatacccatgcccaagagaagatgttgaagaacaagagcacgctgataaatgcaggggctagcagaaacatattcaagcttgtctgggctgaaggataa</cdnaseq>

Protein Sequence

<aaseq>MAPEARQLKVHLRENEAVAQCVLEKWRSMEEKPGGLKENLAHTL YKSYRNVCAAKEPIRSLKDLYQIKGVGKWVIRQLKGSFPESSPDLSPPESNAAGEKGK KAGGSKRYVPQKNSAAYAILITLHRETINGKSHMKKQELIDATEASGLSRSAIGPDKS KAKPGAFASSQKDWYTGWSCMKTLTSKGLVAKSGNPAKYMITEEGKSTALECLSRSGL DDHAAPLVINSAPDTSNASHKLNNICMTSFVETSSGPSRAIGRPKTSIANPATKTSPE VTYLTSQESLNYNSDVRTAENCAEEIILSDSDSEELYTENYPLIGSEEFTERVAPPIL NASNSGKTTTNYRFSDCSASISPRSSEGTFEMQSSSTMGIAEFNMLDNDTVCMDNSIL AMPPRRSSKNFLEDYEVVLILDDRENFGGRSRKTVDNIHSQFRVPVEIKHLPVGDGIW IARDRKLHTEYVLDFIVERKNVADLCSSITDNRYKDQKLRLKKCGLRKLIYLVEGDPN PLDTSERIKTACFTTEILEGFDVQRTPGYAETVRTYGNLTHSITEYYSTHFSTGANTS QVCLTYDEFTKKCDDLKKITVSDVFALQLMQVPQVTEEAALAVIGLYPTLFSLAKAYS MLDGDTHAQEKMLKNKSTLINAGASRNIFKLVWAEG</aaseq>

Gene Sequence

<dnaseqindica>122..324#838..935#1066..1144#1297..1383#1473..1598#2701..2992#3430..3505#3586..3642#3747..3844#3975..4117#4974..5031#5507..5665#6200..6279#6430..6664#6769..6855#7059..7163#aaactcctccgaaacctcccacaaatggcgggctcttcctccccaacctgaaaccccaaaccctaacccccccaatccggcgacccccctccaccgcagcggcctctccagcccctcgccgatggcgccggaggcgaggcaactcaaggtgcacctccgggagaacgaggcggtcgcgcaatgcgtcctggagaagtggcgctcgatggaggagaagccgggcggcctcaaggagaacctggctcacacgctctacaaatcctaccgcaacgtctgcgccgccaaggagcccatccgatccctcaaggacctgtatcagatcaagtaataacatgtttcccgtgcctatcccttgttctattatttttctcggttgcgggggctgaaggttgcagtgcggctagggtttgattgattttggtttgggggttttcgattgggcggttttaccggaatggtgaactgttgcgtgtctaaattcgtcaagatttcaatgcggggacagggttatatcgtgagctgtaaaatcataatgttcgcatatgttgatcacctatatatggtaaaaatttgactcaatgcgtgtcgtcaaaccaattttagttgctttgaagtagataaataagcaagtgctgtaactgtaactgtggctttagtgtggattcatgtaggagtttacacttcggtttttgtttcataagttggatttagagaacaaatatctcgaacttcacactactatacatgtttttcttggttagtataatcaagcagcatataatgtaccactaattctcaaaagtattactgtgtttcctgttctatcactgttgtcaggggcgttgggaaatgggtcataaggcaactgaaaggatcctttccagagtctagtccagatttatctcccccggaaagtaatgcagcaggagaaaagggtaactgtttttatgattgattgcatgcctaccgaacatctcttttagggtacccttatcctttcttgtgggaagggttttttaagttaatctgctgtggtgagaatgaagatcactattatttctatagggaagaaagcaggagggtcaaagcgttatgtgccacagaagaattctgctgcttacgcgatactgatcacgctccataggtatgctttgcttggggatatatttttcattatttttgctgttcatcaaatgaaagtgttttctatctcttggcaaacaatgatatataaccataggaattagaacaggttcctacttgtaaccagacagtaacagttgattttccttctagggaaacaatcaatgggaagagtcatatgaagaagcaagagcttattgacgccactgaagcaagtggcctgtcacgaagtgcaattgggtacagttttcacagtatactcgcaatgttgctcattcctgctgctattttcagtgcattactaagtaggtaatttgcattatgaacagtccagacaaaagtaaagcaaaaccaggggcttttgcaagttctcagaaggactggtacactggatggagctgcatgaaaacattgacatctaaaggactggttgcaaagtccggtaaccctgcaaagtaatttcatcaaacttatcttccatgtctatgttaacttttccgctctgttactttagatgaaaaatgtttggttcctacagttgcaaaaaggttgactgttgtcagtggcagtgccacattcttgagtatggaatctatacacccactcacagttatttcttttgtgagaaagctcctacctatctaaaattccacacataatcttaagataaaaattttatgtgaatcagcaccaaaggtttttgtacgtgtattagatcatatgtactaattctgtctttactactagcttttctgatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatattcaacagagcatcactgctaagggctagctattaattgtgcatctttttaaaagagcttcattaagttataatatggaaatcaaatgaactgagtcatgaacacttgtattcataaacttggttacttttatcaaaatgttcatggggctattgtttatagtactagtgatttgcatcattggttatttgaggtttgggataagtttagcatcacgagacacaaaagctaggaaatttgacatgatgccaccttaagatccctgcagatgattggcagttttttttatgtccactatctccatgcactttatggaatatattgttttctgatattttgagctaattttgaaaggacacacttttagatttaaggatgcagttattctgtggcatagcaacaactctctatcgatgaatagaggcagagtgggagacatggccaattgtgagcttcttttgacctgttagtctacaatgtgaagcaacatgtacctactgatcttccacttgggatcatgatacagagacctatcatttgtttgtcgcataaactgtaacccacgtcttgatctctagtattactttaatccatttgttttcatttgtgtgatgggagaactgagtctattaagtttacatgcatgcatcttgttgggactatattattaagcaatatgtacttttttgaggtgctaagcataactaggggcttaacaaatgaatttctgtaggtatatgataactgaagaagggaaatcgactgctcttgaatgtctctcaaggtctgggttagatgatcatgcagcacctttggtgataaacagtgctcccgacacatctaatgcaagtcataagttgaataatatttgcatgacttcttttgttgagacatcatccggaccttctagggcaattggtagacccaaaacatctattgccaaccctgccactaagacatcaccagaagtgacatatttgacaagtcaagaatcactcaattacaactctgatgttagaactgctgtaagttctacctttactaacattgctttagaagctatttttcccaagctaagaatgtgacaaaagatccattggtctggttctattgtattatatagtttttcttctgatcaagttcttcaatttaatgatcacaatattcaatcttagcttctggttcagctgtttcagcataagcagaactgccattatttttgtatctcaataaagcaaagcctttttgtagctttgcgatgttgttgctgtctaatagtgctacaatttggtgaagtccaatcaggcacttttcctttttaggttttacgtggtttgggttgtaattagtgtacataattctgaattacaggctaggctttcggccatagttccatacttttctgtcatactagaattttagatgctgtagtataactcatagattctcttatcttttttaggagaactgtgctgaagaaatcattcttagtgactcagattctgaagaattatatacagagaactatcctctaataggtaaaattgttatttcgagctcacaaacaatttgttatattccttctgcgctaaaataaattttggtttcctaagtgcaggttctgaagaatttactgagagggttgcccctccaatattgaatgcaagcaactctggttgtctatcaatcttatgttttctattagaataatattgcatccaataaaagtattatttttactggccttttcaattaatcccaataaccttttttttccaggcaagactactacaaattacagattctcagactgttcagcttctatttctcctcgttcgtctgaaggaacatttgagatgcagtcttctagtacaatggtaacctgaccttttgtggttaaatccctaatccctaatccctattctgtaacttattcccttttgaagttgaagatgctgattactcaaagaaatgacggtactgctattacatcttttcaactaccagggtattgctgaattcaatatgctggacaatgatactgtatgtatggacaattctatactagccatgccacctcggcgatccagtaaaaattttcttgaagattatgaagttgtgttgatattggatgatcgtgaaaattttgggtttgtatgatcgtaccatactcttacatcttacaaaatttgtatctatggttgtatcatgggtattaggtaggggtctgaggcccacgatggtactgttcactcctaccttatcttaatctgttagccaacatataagcactcaaaatttacatagcttgtttgaaaaatcaatctattcattatggacagttacattacacaatgtttcaaggttatctggataagaggatgctagtttcaaggatttgattaatgtactgattatttgcattctatcctttccattgatttgcaaatatgagagaaatttattttactctttgcacactgttccgttaaagtaagacacatgatgatttttcaaataccattctttttcccttttggagcccattgcaatgcttaactaacttcattttcctgaatcttaaaacactttgaacccgtattgttttcagttaattttacctttaatgttgatgtttggtgcatctaactgtctatccttaaacttttgggtctcatgttaaggtctaactagtaacctctcaactcaaacagctgaaacgattggaacatgtgcttttatgttctagtattaggtttatgagaactatttgtcatgttccttttccaatattgctaagacagctcgatatttttctatgaaatttttcattactgaaattttaagtaccagatacacatggggctgcatttttgtttcaaatattttgctactacccatttcccccctgcaattacatgttttatattaacttcattcattggctttatttcgaacaactgtgtatctgttcgttctcaaaactgttaccttttcttttggcaggggtcgttcaagaaaaactgttgataacatacattcacaatttcgtgtacctgtagaggttagttaagtttgaatttttagtctttctaatctctccttacttcctctgtttcccattatccttgcacatctcctcactcctcggaccacccaaacttgcttcacaaattcaataccatttcatcaacatgattataattaaatatcctggcaataacaagaaatcttctttaaacaatataaagcaggcactaatttcttctgtttgcttacctgatgcacaagttcaaatatataatttagatgatttgtatgctagttttggtgtgctggtaaaatattgatcaaaagagcaggggaaacacctgcgctgaatatataagcttgccctaacttctgtgggactaaagctgcagctgttgctgtaggcaataaatgaagtgtcacagattttgttcataaattgagttgttcatttagcgtgtgccagtgaaagtgatttttgatccttctatttgaaccatgtctttcagataaagcatttgcctgttggggatggtatttggattgctcgtgatagaaagcttcacacagagtatgttcttgatttcattgttgaaaggaagaatgttgcagatttgtgtagttcaatcacagacaaccgatacaaagatcagaagttaaggctcaaggtaccatctgcgctatcatcgccttcgctttaatattgaactttaatgttaattccccttgttttttatattttcagttttgttacttgtacgaaattcagtttgtttcttattataatcctatcagcaggtgtggctactgaaaacatttatttgttcatgtgccactgacatttgtagcaattaggttgatggcaaactcgtgagcatgtttggctgcataatcatggaagcaaatgtgacacttaatcatagatccagtgtaacttaatttgatgttatggtacaaataccgttgaactttttttttccttaggtctttcatagttatatttgtaaagttgatattgatttgtgttgagaactactgaattttatgtggaatgttctagttttccctgatgctaggactcgagcctgtagattttgaacctcctctcaggcatattgtttatcttttccatatatatgcaccatattttgtttattgttagcagcaatatgttgtgattctttggtgcaccttgtttgtagaaatgtggcctaaggaagctgatatatctggttgaaggtgatccaaaccctcttgatacatcagaaaggatcaaaactgcgtatgtactctgcagcagctttttcttgttgatttctcttcttttaccctcccttaaaagtagtttgtattgtatagatttgtcagtcaatgaattggatttttggctgcatgacatatgaccttgtaaccgctggccttatatatgcagctgcttcaccactgaaattcttgaaggatttgatgtccagagaacccctgggtatgctgagactgtaaggacatatggcaaccttactcattcaataaccgaatactacagcacacacttttctactggtgctaatacttctcaagtttgcctgacctatgatgagtttacgaagaagtgtgatgaccttaagaagataactgtgagtgatgtattcgcccttcaacttatgcaggtaattgggcaataaaaacaatcttcaccaaagtcagacatctattcatttcatgttgtagttggaggcaagaattttcctaattaattatgaatgtgatgcaggtgccacaagtgacagaagaagctgcacttgctgtgatagggctctatccaactcttttctcacttgctaaggcgtactctatgcttgtcagttcccttctccttttaacttttacaatgttcattagacgcaccattttaatgttctttccatttataactcctgtttatacttgtaaaccagaacagcgtagtgcattccatatctcttgctgctctagtactatttatctcacacaatatgctttattcttttcgtgaattaaaccttgtttttgtgatgtttttaggatggtgatacccatgcccaagagaagatgttgaagaacaagagcacgctgataaatgcaggggctagcagaaacatattcaagcttgtctgggctgaaggataaattcttcagtttattttccgattaactggtttaaccatttttttggtcatcttcttggtgactctgatggatccaccagtgaagctccccaattctcagttctcactgcaactctttcatgtcctgaaggcaaacggggtccttttttgtgtgccaaggtgccatggaacacaactaaccacctacatagggactttgcaagttagcttatccgcgtaggttcacccccatctaggtagactaattatcttttgtagactccaggttgtacaaaatggaattatcatggaacggggccgtttagcgtttcacatctgtttactcggttgcttggatt</dnaseqindica>

External Link(s)

NCBI Gene:Os01g0948100, RefSeq:Os01g0948100