Os01g0952300

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Revision as of 05:22, 25 June 2012 by 127.0.0.1 (talk) (Created page with "{{JaponicaGene| GeneName = Os01g0952300| Description = Pleckstrin homology-type domain containing protein| Version = NM_001051954.2 GI:297598337 GeneID:4325746| Length = 7...")
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Gene Name

Os01g0952300

Description

Pleckstrin homology-type domain containing protein

Version

NM_001051954.2 GI:297598337 GeneID:4325746

Length

7098 bp

Definition

Oryza sativa Japonica Group Os01g0952300, complete gene.

Source

Oryza sativa Japonica Group

 ORGANISM  Oryza sativa Japonica Group
           Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
           Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; BEP
           clade; Ehrhartoideae; Oryzeae; Oryza.
Chromosome

Chromosome 1

Location

Chromosome 1:43720282..43727379

Sequence Coding Region

43720282..43720430,43720793..43720896,43720974..43721329,43721579..43721725,43722154..43724277
,43724638..43724832,43724976..43725056,43725813..43725902,43725995..43726081
,43727311..43727379

Expression

GEO Profiles:Os01g0952300

Genome Context

<gbrowseImage1> name=NC_008394:43720282..43727379 source=RiceChromosome01 preset=GeneLocation </gbrowseImage1>

Gene Structure

<gbrowseImage2> name=NC_008394:43720282..43727379 source=RiceChromosome01 preset=GeneLocation </gbrowseImage2>

Coding Sequence

<cdnaseq>atgtcggacgcgtcgtcggatctcgccggcggtcgggcggccccccccgtggagcgcgacatcgagcaggctatcaccgcccttaagaaaggagcttacttattgaagtatggacgtaggggaaaaccaaagttctgtccatttaggttatccaatgacgaatctgtactgatatggttctcagggaaagaggagaaacatctaaggttgagccaagtgtccaggatagttcctgggcaacggactgcaatttttcagaggtatccacgacctgagaaggaatgtcagtcgttttctctgatttcacatgatagatcattggacatcatttgtaaagataaagatgaggcagaagtgtggtttgctgggctgaaaacattgatttcacatagccatcaaagaaaatggagaacagaatcgagaagtgatatcatatcctctggtgcaactagtccaaggacttatacacgtcggagttctccattgagttctcccttcagtagcaatgacagtgtccataaggatggcagtgatcattaccgactccggagtccatttgggagtccaccaaagaatgcattggataaggccttttctgacgttgtgttatatgcagttcctcccaagggcttcttcccatcagattctaatgccggatcagtccactctatgtcgtctggacactcagataacacaaatggtcacccaagaggcatcccaatggatgcttttcgggtcagttattcaagtgctatcagttcgtcaagtcatggttcaggtcatgatgatggggatgctttaggtgacgttttcatatggggagaaggaactggggaaggaattctcggtggtggtagttcaagggttggaagctcttctagtgcaaagatggattatcttgtaccaaaaccattagagttcgctgtgcgacttgatgtgcagaatatatcttgtggaggaaggcatgctgcattggtcactaaacaaggggagatctactcttggggtgaggaatcaggtggccggcttgggcatggtgtagattgtgatgtggcacaaccaaaactcattgattctcttgctcacatgaacatagagctggtagcatgcggtgaataccatacctgtgctgttacactatctggagatctgtatacatggggggatggcacctttaaatttgggcttttgggtcatggaaatgatgtcagtcactgggtaccaaaaagggttgatgggccattagagggtatacatgtatcatcaatttcttgtggcccttggcatacggccctagtaacttctgctggccagctgttcacatttggagatggatcttttggtgttctagggcatggagatcgtgcaagtctttcagtccccagggaagtagaatccctaaaaggtctacgaacggttcgggcagcttgtggtgtttggcacactgctgctgttgtagaagtcatggttgggaattcaagttctagcaattgttcatctggcaagatatttacttggggtgatggagataaaggccgtttaggacatggtgacaaggactcaagatttgtcccaacatgtgtggctgctttggtggagcccaatttttgtcaagttgcttgtgggcattgcttgacagtggctcttacaacctcagggcatgtatatacaatgggtagtgctgtctatggtcagcttggaaatccacaagcagatggtttgcttcctgtacgtgttgaagggaagctgcacaaaaactttgtagaagaaatttcttgtggtgcttatcatgtggctgtattgacatccaggactgaggtgtacacgtggggtaaaggtgcaaatggtcggttaggtcatggtggtactgatgataagaatactcctacattggttgaagcattgaaagataagcaagtcagaagtgttgtgtgtggaattaacttcactgcagcaatatgcattcataaatgggtatctggaagtgatcagtcaatgtgctctggatgccgtcagccgtttaacttgaggagaaaacgtcataattgctacaattgtgctctagtattttgtcattcatgcagcagtaaaaaatctttgaaggcttcattggcgccaaacccgaacaagccttaccgcgtctgtgatagttgctacagcaaactcactaaggggcttgaaacagacacaaactcctcaactaagcgaggcactgttgtacagggattcagtgaaactaatgaggaggagctggaaacacggtcaaatacccaactgtcgagattgtcttctatggaatcttttaagaacatggacagtagatattcgaagaaaaacaaaaagtttgaattcaacagcactcgtgtttcccctgttccaaatggcagttcacactggagcgggctcaatatttcaagatccttcaatcctgtatttggatcctcaaagaagtttttttcagcatctgttcctggatcaagaattgtttctagggcaacatcacctgtctcaagaagaacaagccctcctagatcgacaaccccaacgcctactttgggtggtctaacttctcctagagttattgccaatgatgccaagcctacaaatgatagtctaagccacgaggtcttgaatttgaggtcccaggtggagaatcttactaggaagtctcatcttctggaagttgagctggagagaactacgaaacaattgaaggaagcaattgtaattgctggggaggaaactgccaagtgcaaggctgcaaaagaagtaatcaaatcactcacggcacaattgaagggaatggcagagagattgcctggaggagtaaccaagaatagcaaactgccgcccctatctggatttcctatgccaagtgagctatcatccatggctacagaaagtttgggtagcccaagcagtgtaggagaacaaatttcaaatggtcctaatgggctgcttgcttctaatggaccaagttctgttagaatcaaggcaggtcatccagaagttggcaaaaatggtagtagactgcctgaagcagaatcatgccatgaggctgaatgggtggagcaagacgaaccaggcgtttacatcactctaaccgccttgcctggaggtgcgagagatctcaagcgggttcggttcagccggaagagattcagcgagacccaggcagaacaatggtggcaggagaacaggacaagggtataccagcattacaatgttcggatggttgaaaaatcagcctccatgccagtccaatatctggacctacctgaaatcagaacattgggcatctactgcggtctgcgtggatgcagaggatctcaccacccagccagccagcctggtgcttttgttgctggaggcaggttggaagatgcaaaagaaatgtcttag</cdnaseq>

Protein Sequence

<aaseq>MSDASSDLAGGRAAPPVERDIEQAITALKKGAYLLKYGRRGKPK FCPFRLSNDESVLIWFSGKEEKHLRLSQVSRIVPGQRTAIFQRYPRPEKECQSFSLIS HDRSLDIICKDKDEAEVWFAGLKTLISHSHQRKWRTESRSDIISSGATSPRTYTRRSS PLSSPFSSNDSVHKDGSDHYRLRSPFGSPPKNALDKAFSDVVLYAVPPKGFFPSDSNA GSVHSMSSGHSDNTNGHPRGIPMDAFRVSYSSAISSSSHGSGHDDGDALGDVFIWGEG TGEGILGGGSSRVGSSSSAKMDYLVPKPLEFAVRLDVQNISCGGRHAALVTKQGEIYS WGEESGGRLGHGVDCDVAQPKLIDSLAHMNIELVACGEYHTCAVTLSGDLYTWGDGTF KFGLLGHGNDVSHWVPKRVDGPLEGIHVSSISCGPWHTALVTSAGQLFTFGDGSFGVL GHGDRASLSVPREVESLKGLRTVRAACGVWHTAAVVEVMVGNSSSSNCSSGKIFTWGD GDKGRLGHGDKDSRFVPTCVAALVEPNFCQVACGHCLTVALTTSGHVYTMGSAVYGQL GNPQADGLLPVRVEGKLHKNFVEEISCGAYHVAVLTSRTEVYTWGKGANGRLGHGGTD DKNTPTLVEALKDKQVRSVVCGINFTAAICIHKWVSGSDQSMCSGCRQPFNLRRKRHN CYNCALVFCHSCSSKKSLKASLAPNPNKPYRVCDSCYSKLTKGLETDTNSSTKRGTVV QGFSETNEEELETRSNTQLSRLSSMESFKNMDSRYSKKNKKFEFNSTRVSPVPNGSSH WSGLNISRSFNPVFGSSKKFFSASVPGSRIVSRATSPVSRRTSPPRSTTPTPTLGGLT SPRVIANDAKPTNDSLSHEVLNLRSQVENLTRKSHLLEVELERTTKQLKEAIVIAGEE TAKCKAAKEVIKSLTAQLKGMAERLPGGVTKNSKLPPLSGFPMPSELSSMATESLGSP SSVGEQISNGPNGLLASNGPSSVRIKAGHPEVGKNGSRLPEAESCHEAEWVEQDEPGV YITLTALPGGARDLKRVRFSRKRFSETQAEQWWQENRTRVYQHYNVRMVEKSASMPVQ YLDLPEIRTLGIYCGLRGCRGSHHPASQPGAFVAGGRLEDAKEMS</aaseq>

Gene Sequence

<dnaseqindica>6950..7098#6484..6587#6051..6406#5655..5801#3103..5226#2548..2742#2324..2404#1478..1567#1299..1385#1..69#atgtcggacgcgtcgtcggatctcgccggcggtcgggcggccccccccgtggagcgcgacatcgagcaggtgcggtgctgctgccgcctcgccgccactcccccatttgcacgacatctcagtgaatcggttttcccgtacttgtttttcttttagtttgtttttttttttggtttctcgtggggtgcaactctgaggaagagagagagagagtagtactccacaccacatgcttctgcttgggtctctgtgctcatgtgctgtgccgaattggttgctggattcgtcagttcgtgccgattgggccttgggggtgaaatggtgcccgaattcgcggagctagatagaagctatttgaccgtgttccagttggttttctagtatttgaattgagctgggatttctagttgaattgaattgggagcgacggcttgctcttgctctcgtgagattccgggagccggagaaatgattaacctgatatcgtctatctggattctggagttttagtagtatgcatttgaggtctaattggagttagtcctttgtacattttctggagttgggagcctgaagggagttcagtttcgaattagtcttggagcgtcaggagttcgtgttgtttttcagttacagatgcttggcttgtcctcagggctgttgggcatttgctaaatgattgtccattctgatgtagttggtaaagtggacctgaatttcggaaattctgatggggctataataggatttttatgacttgttaaaattgtcgagagactgagtgcatataaagtcttaatgctgctgtggattgaactcctgtagatttcgaaggaggttgtcagtcaaatggataggagatgcttattttgcccgtataatcctctgtctgctcttttgtcgctgagatgagtggattgttcagctgaaatgccgtttattttgtgttcttttctgctactttgtattctagttgaggtaaaacctgttcaacaagataaaatgggaagtgggggtgaaagcaggacggtttctgttcaagattgaaccaataccgcgacacggcatagaaattactctattcagttcattatttttataattaatgaccgaatgcctatagttagcggaagatcacatttctttattgtttgatttgttatgaaagatactcagccttcgaaacatttagtgactggtgttctatgcctatattactttcccttgtgtcatggcatctgaaggttgcattctcctgatgatcactagcctcttttgattaattcgactttctgcaggctatcaccgcccttaagaaaggagcttacttattgaagtatggacgtaggggaaaaccaaagttctgtccatttaggttatccaatgtgagtttttactttcccacccgttaagttttttttttctgaacttctatgtgattttctcacttttaaggtgtctttttgtattccttcaggacgaatctgtactgatatggttctcagggaaagaggagaaacatctaaggttgagccaagtgtccaggatagttcctgggcaacggactgtaagttaacactcctaaaaactatccagaattttacaaggcaggggtggatctaaaaaaatgtcattgaggtcactcttttcacatatcatggtgaaaatgcctaagtataagagtgatttattagttcctaagaatatttggtagtgtaattagcaaaagtcataggtgtcatccgacaccagtaattatactgtggatctgctcctgctacaaggtgatcctgtttaactatgcttgcccattatgacaaactattctgattaacaaacataattacaagagaagtttgatatttatattcttgctgtttatgtttccttcagcctcttgcatcattcttttgttttctctgtggtaaactaaactacggcaaactttactagtgtctctgcaagttcttacttgtttaagtttctataatatgtatattttttttgaaagacgtgtctataatatattggcactaaacctactaacctagtatcattaagtggaatagcgattccggtctatgcaattggttcaaatcactggtagccttaaatctgtatttgaataaattggttcattgtctaatctgaccaatctactgaggaagctattagcatcactccaaactgtcatgtgatggtttgaccgtatgatcgcctcccatttttaatgaatgttctgatgagtttggttacaggtatttctaatctgatgttggcacacaacttactgactagaaatcattttttgggataaatctaggcaatttttcagaggtatccacgacctgagaaggaatgtcagtcgttttctctgatttcacatgatagatcattggacatcgtaagttcttcatggttcacatttcatgtttatctttgtcgatctctttcaaactttgatgtaacctgcattactttcttttgcttttgacttgtatggagtctcttctttacatggaaatatgttttccttaataatttcagatttgtaaagataaagatgaggcagaagtgtggtttgctgggctgaaaacattgatttcacatagccatcaaagaaaatggagaacagaatcgagaagtgatatcatatcctctggtgcaactagtccaaggacttatacacgtcggagttctccattgagttctcccttcagtagcaatgacagtgtccataaggtatttgctatccatcatctcttgaatatgaatgatctactcttgtattccatcatctttccactttgctcatgtctcatctcttgttcaaagtcatgccaacatctgtctgtggtcctgagtgctctacctgtagtattatagtttaagctaaataatatctcacgcgtggtcaagtattgttatgtgtgttttcatttcattgacatgagcaatagttaaacataagggagtatacaagttttaattatttttatgaccttccttctcatcatgttgaatcatatgctattccatttgatacgacactatttttaacaccaattcataaagtgatttctgacagttattttacatcaggatggcagtgatcattaccgactccggagtccatttgggagtccaccaaagaatgcattggataaggccttttctgacgttgtgttatatgcagttcctcccaagggcttcttcccatcagattctaatgccggatcagtccactctatgtcgtctggacactcagataacacaaatggtcacccaagaggcatcccaatggatgcttttcgggtcagttattcaagtgctatcagttcgtcaagtcatggttcaggtcatgatgatggggatgctttaggtgacgttttcatatggggagaaggaactggggaaggaattctcggtggtggtagttcaagggttggaagctcttctagtgcaaagatggattatcttgtaccaaaaccattagagttcgctgtgcgacttgatgtgcagaatatatcttgtggaggaaggcatgctgcattggtcactaaacaaggggagatctactcttggggtgaggaatcaggtggccggcttgggcatggtgtagattgtgatgtggcacaaccaaaactcattgattctcttgctcacatgaacatagagctggtagcatgcggtgaataccatacctgtgctgttacactatctggagatctgtatacatggggggatggcacctttaaatttgggcttttgggtcatggaaatgatgtcagtcactgggtaccaaaaagggttgatgggccattagagggtatacatgtatcatcaatttcttgtggcccttggcatacggccctagtaacttctgctggccagctgttcacatttggagatggatcttttggtgttctagggcatggagatcgtgcaagtctttcagtccccagggaagtagaatccctaaaaggtctacgaacggttcgggcagcttgtggtgtttggcacactgctgctgttgtagaagtcatggttgggaattcaagttctagcaattgttcatctggcaagatatttacttggggtgatggagataaaggccgtttaggacatggtgacaaggactcaagatttgtcccaacatgtgtggctgctttggtggagcccaatttttgtcaagttgcttgtgggcattgcttgacagtggctcttacaacctcagggcatgtatatacaatgggtagtgctgtctatggtcagcttggaaatccacaagcagatggtttgcttcctgtacgtgttgaagggaagctgcacaaaaactttgtagaagaaatttcttgtggtgcttatcatgtggctgtattgacatccaggactgaggtgtacacgtggggtaaaggtgcaaatggtcggttaggtcatggtggtactgatgataagaatactcctacattggttgaagcattgaaagataagcaagtcagaagtgttgtgtgtggaattaacttcactgcagcaatatgcattcataaatgggtatctggaagtgatcagtcaatgtgctctggatgccgtcagccgtttaacttgaggagaaaacgtcataattgctacaattgtgctctagtattttgtcattcatgcagcagtaaaaaatctttgaaggcttcattggcgccaaacccgaacaagccttaccgcgtctgtgatagttgctacagcaaactcactaaggggcttgaaacagacacaaactcctcaactaagcgaggcactgttgtacagggattcagtgaaactaatgaggaggagctggaaacacggtcaaatacccaactgtcgagattgtcttctatggaatcttttaagaacatggacagtagatattcgaagaaaaacaaaaagtttgaattcaacagcactcgtgtttcccctgttccaaatggcagttcacactggagcgggctcaatatttcaagatccttcaatcctgtatttggatcctcaaagaagtttttttcagcatctgttcctggatcaagaattgtttctagggcaacatcacctgtctcaagaagaacaagccctcctagatcgacaaccccaacgcctactttgggtggtctaacttctcctagagttattgccaatgatgccaagcctacaaatgatagtctaagccacgaggtcttgaatttgaggtcccaggtatacattctgttgcatttttctgttttatccactgtttttttgtagcaatttgatgatttctaccgtttgctttttaggattgtagttgttaattttctggatttccagcacaacgagtcagcagatgatattagcttagtaatcacgtaaagctgttggcttgtaaaactaacagatagcattacaaaatttttgacgcgatagcattacaaaatatgtgcattctattcctattaccactttgaaatctgtaaaacggatgtctgcacttccttgtgttctaacagtaaaaacgtacaagctagtcattaagtgcattatcatttgaccaaatatcaaccttttgagttctatctggttttacccaagtccctattgaacagtgaggatctgattgctgatatagtaaacctctccacttgcaggtggagaatcttactaggaagtctcatcttctggaagttgagctggagagaactacgaaacaattgaaggaagcaattgtaattgctggggaggaaactgccaagtgcaaggctgcaaaagaagtaatcaaatcactcacggcacaagtaagattgcatttttgtgagcttgccgttttgttccccttgttatgcatgaataagtaagaaccaaccccatatcaaacagtaagttacctagtttagcagtttggtacaatggcagatctaatggtctcaacaatttaaaatacatcaaacgccaccatgttccataacccaagtctctattgacatctatttatgccattcatgtgatattttgtgtaatatagtttccactcgcttttataatagttgaagggaatggcagagagattgcctggaggagtaaccaagaatagcaaactgccgcccctatctggatttcctatgccaagtgagctatcatccatggctacagaaagtttgggtagcccaagcagtgtaggagaacaaatttcaaatggtcctaatgggctgcttgcttctaatggaccaagttctgttagaatcaaggcaggtcatccagaagttggcaaaaatggtagtagactgcctgaagcagaatcatgccatgaggctgaatgggtggagcaagacgaaccaggcgtttacatcactctaaccgccttgcctggaggtgcgagagatctcaagcgggttcggttcaggtatatcctgttaatcctgtgcaagaatcaaagttttgtttggttcagcttttcactcttggtttgtatgaatccagccggaagagattcagcgagacccaggcagaacaatggtggcaggagaacaggacaagggtataccagcattacaatgttcggatggttgaaaaatcagcctccagtatcgataatgagattgcatctcggtgacattagatttgacatttggacaaaaggagagctgagatcctttacgatgtgaaggcgctctctgttcggttgctaacctggcccccataaaagaggagattctcgctatgtaagaaagagaaaaagaaagagagaaagaaaggcggcatctcagttttacggtttctccctcgctccccctccttttcccccccttgtgtgcaaagtagagtgcttaagaagtaatgtaaatgcttagtggaagaaagctaatttgtcaaatgtaaatgcatacgcaagcgcatcgattttagattatgcattttaactaattttcccacaatgtcgtgccagtgccagtccaatatctggacctacctgaaatcagaacattgggcatctactgcggtctgcgtggatgcagaggatctcaccacccagccagccagcctggtgcttttgttgctggaggcaggttggaagatgcaaaagaaatgtcttag</dnaseqindica>

External Link(s)

NCBI Gene:Os01g0952300, RefSeq:Os01g0952300