Os01g0973300

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Revision as of 05:25, 25 June 2012 by 127.0.0.1 (talk) (Created page with "{{JaponicaGene| GeneName = Os01g0973300| Description = Adaptin, N-terminal domain containing protein| Version = NM_001052081.1 GI:115442532 GeneID:4326400| Length = 5457 b...")
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Gene Name

Os01g0973300

Description

Adaptin, N-terminal domain containing protein

Version

NM_001052081.1 GI:115442532 GeneID:4326400

Length

5457 bp

Definition

Oryza sativa Japonica Group Os01g0973300, complete gene.

Source

Oryza sativa Japonica Group

 ORGANISM  Oryza sativa Japonica Group
           Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
           Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; BEP
           clade; Ehrhartoideae; Oryzeae; Oryza.
Chromosome

Chromosome 1

Location

Chromosome 1:44766266..44771722

Sequence Coding Region

44766267..44766305,44766395..44766964,44767486..44767659,44768002..44768128,44768207..44768316
,44769195..44769395,44769487..44770454,44770598..44770846,44771248..44771593

Expression

GEO Profiles:Os01g0973300

Genome Context

<gbrowseImage1> name=NC_008394:44766266..44771722 source=RiceChromosome01 preset=GeneLocation </gbrowseImage1>

Gene Structure

<gbrowseImage2> name=NC_008394:44766266..44771722 source=RiceChromosome01 preset=GeneLocation </gbrowseImage2>

Coding Sequence

<cdnaseq>cacgacttacttccagatgaaactacatctttggaggacacggtagatgttttgttcagtgacaattccccgggagtagtgggagctactgctgttgcctttaactcagtttgcccaaattgtttacccttgatatcaaagcatttccaaaggctatgtgagacactcccagatattgaagaatgggctcagattcttctaatcgatatcatcttgcgatatgtaatagctagacatggattggtgaaggattcttcaatttttgcttcaaatttgactttgaagagccagggcagtggagattcagcccttattggcaatgaaacttgtggcactacatcaaccatcacattgttccgacattacattgaagaatattcggaatgtttagaaggtgacataatcaactgttcatccgtgaccagtagcacaaacaatgatgttgcactacttttgaaatgtacatcgcctcttctgtggagccgaaacagtggagtcatacttgcagcagcaagtgttcattggatcatggctccagttgaccaactgaatagagttgttgggccaattttatttactctacgctcatctcctgatgcaacatatgtgatgcttggcaacatactagtttttgccaagacagccccacaattgtttgctccgttctatgaagatttcttcatatgcacttcagatccatatcaaactaaggctttgaagcttgaaatactgaccaccatagccacagagtcctctattccagcaatttttgaagaatttcaggattatattaaagaaccggataggagatttgtggcagatacagttgctgctattgcgctgtgtgcccagaagcttccctctatcactaccagttgccttggtgggcttttggcactagtattttatgaatcatctataagtgattctgctaactttgatggagaagctgctgttttagttcaagcaattttgtctatcaaagcaatagtgagaacagatccagcatctcatgaaaaggtgattgtacgcttggtccacagcctggacaaaattaaggagcctgcagcacgatccctgattatttggatatttggagagtatagttccataggaaatatcattccaaagataactcctgctgttctcaagtatcttgcatggtcctttgctgctgaaatgcttgagacaaagcttcagatcttaaatgctgctgcaaaggttatcatacattctcctgaagaacacttagaagaattcaaaaagataatggcccatgtcattaagctggctacatgtgatttgagttatgacgtccgtgatcgtgcccgttttatatcaagacttttgccatacagcacaacctatttaaatggaaacaactcctcatgtcaatcacataatgaagatatgtttaaggaactggctaatcatatatttgatgggaagatgccatcaacattccatccaaccaataactaccggatttatcttcctggttccttgtcacaggtgattcttcatgcagctcctggttacgcaccacttccaaagcctcagagtatggaattaattcataagaccatggaaccaaccagaggagtaggcaattcttctgaaagcattaattctgatgctgaatctggatcttcaacatatgatggtggttctgtttatgattcagagagtgaagttgatggctcatctgacaggaatgctgctgattctaacacaaaagataatcaagaagatcccctggtccatgtttatgatgcaagtgtagatcaaggtcagacggctagggatgtcgaggataattttgcatctctcatcactactgatttgactgaattaatgtctaagtcagccttggaaacatggcttgatgaagctcctgctgaaccagttcaggtttctacacaagcatcctctgctagagtgtcttttaccaatcggagctttgagcgaaaacctaaattgcacatgttgttagacccatctaatagtaatggtctaagtgttctttatgccttttcatctgaggtttcacccgtatcacgcttgctagtgtgtgtagacttgttatttgagaatgtttcaacaaaccaactggcagatataacaattaaatccgaggaggcttctggtagtgaggatggcttggaccaaacattacaaggatctgcaagtgttccaactattgttcttgataaagagatacaattattggctcccgaacaaacggaaaagatggttcttcaggttcacttccatcaccatctattgccccttaagttgtctgtgctctgcaatgggaaaaggcatccagcaaaacttcatcctgacattgcttattttgtgcggccactgcccatggacctaaatgcttttctatgcaaggaaaaccaactgaggggaatgtttgagtatgctagaaggtgcactttcaaagatcatcttcagaagcttgagcacaacgatgatagtgaagagcacactgataagaaccttctgatagcccagagcctcgcgtcaaaaatactcagcaatgccaacttccacttggtttcaatggatatgccagtgaccttcagcattgaggatgcttctggcttatgctggcgattcagcagtgagatcctgagcacttcaaacccttgcctaattaccatcctcgcggaagggcatatctcggaaccacttgacctcactgctaaggtgaactctgaagatacagcgtttggcctaaacctcctaaacagagttgtagcaatcatagaatga</cdnaseq>

Protein Sequence

<aaseq>HDLLPDETTSLEDTVDVLFSDNSPGVVGATAVAFNSVCPNCLPL ISKHFQRLCETLPDIEEWAQILLIDIILRYVIARHGLVKDSSIFASNLTLKSQGSGDS ALIGNETCGTTSTITLFRHYIEEYSECLEGDIINCSSVTSSTNNDVALLLKCTSPLLW SRNSGVILAAASVHWIMAPVDQLNRVVGPILFTLRSSPDATYVMLGNILVFAKTAPQL FAPFYEDFFICTSDPYQTKALKLEILTTIATESSIPAIFEEFQDYIKEPDRRFVADTV AAIALCAQKLPSITTSCLGGLLALVFYESSISDSANFDGEAAVLVQAILSIKAIVRTD PASHEKVIVRLVHSLDKIKEPAARSLIIWIFGEYSSIGNIIPKITPAVLKYLAWSFAA EMLETKLQILNAAAKVIIHSPEEHLEEFKKIMAHVIKLATCDLSYDVRDRARFISRLL PYSTTYLNGNNSSCQSHNEDMFKELANHIFDGKMPSTFHPTNNYRIYLPGSLSQVILH AAPGYAPLPKPQSMELIHKTMEPTRGVGNSSESINSDAESGSSTYDGGSVYDSESEVD GSSDRNAADSNTKDNQEDPLVHVYDASVDQGQTARDVEDNFASLITTDLTELMSKSAL ETWLDEAPAEPVQVSTQASSARVSFTNRSFERKPKLHMLLDPSNSNGLSVLYAFSSEV SPVSRLLVCVDLLFENVSTNQLADITIKSEEASGSEDGLDQTLQGSASVPTIVLDKEI QLLAPEQTEKMVLQVHFHHHLLPLKLSVLCNGKRHPAKLHPDIAYFVRPLPMDLNAFL CKENQLRGMFEYARRCTFKDHLQKLEHNDDSEEHTDKNLLIAQSLASKILSNANFHLV SMDMPVTFSIEDASGLCWRFSSEILSTSNPCLITILAEGHISEPLDLTAKVNSEDTAF GLNLLNRVVAIIE</aaseq>

Gene Sequence

<dnaseqindica>2..40#130..699#1221..1394#1737..1863#1942..2051#2930..3130#3222..4189#4333..4581#4983..5328#gcacgacttacttccagatgaaactacatctttggaggacgtatgtctagtatgacctttttttcctcgtgcattgatgttgaagattcatatgtatctgaattatgaagtatgctaatatggttgcagacggtagatgttttgttcagtgacaattccccgggagtagtgggagctactgctgttgcctttaactcagtttgcccaaattgtttacccttgatatcaaagcatttccaaaggctatgtgagacactcccagatattgaagaatgggctcagattcttctaatcgatatcatcttgcgatatgtaatagctagacatggattggtgaaggattcttcaatttttgcttcaaatttgactttgaagagccagggcagtggagattcagcccttattggcaatgaaacttgtggcactacatcaaccatcacattgttccgacattacattgaagaatattcggaatgtttagaaggtgacataatcaactgttcatccgtgaccagtagcacaaacaatgatgttgcactacttttgaaatgtacatcgcctcttctgtggagccgaaacagtggagtcatacttgcagcagcaagtgttcattggatcatggctccagttgaccaactgaatagagttgttgggccaattttatttactctacgctcatctcctgatgcaacatatgtggtaatcccaaaatttctttttcctggtccattggtactgtatcctggatttcaactaagaagaaatatggagccaaagcatgttttacacttttactcacttgatccgttgtaaatactcccatagacttttgataatgtcatttcaacaatttttaggtgtaggcttgatgtgcttgactgcttttataactttatgtaaataaatattctattcaaaccaacttttgaccatgctatgtctttctggtgccaaattaaatccttcagagcccaaatgcttctgggacactgtcagccttgctttctgtttgtactgatgtttgaactcaataactcattatagaagacaagcctatggtgcataagcattcacaactttgtgttggatgaagctagcaagttgatcgttaattttaattttattttgagaatcaaatattgagatatatttctttgaaatgttcatgttctctcacttaaatttttacttgatctgacaatcctttttaattcttgcagatgcttggcaacatactagtttttgccaagacagccccacaattgtttgctccgttctatgaagatttcttcatatgcacttcagatccatatcaaactaaggctttgaagcttgaaatactgaccaccatagccacagagtcctctattccagcaatttttgaagaatttcaggtacttgtttgtaaaagcaatgtacactctatatttgacttgtctcagtgacctgataatgttctatatgattctcaaatgaaggttcatttgaagttcatcttgtgattattggtaaccatattcataatatactgaggcaatatattttttgaaaacaaattacctttgctttgttgaattttatgcataacaaacagcatctttctgaatttcttcttgacattgttgtccactccctaatgtgataagtaatatctatcttaaacaaaaactggtatagttagttgttgttaactcatcctgtttgtgcatgtttattgtacttcttattcctgccaggattatattaaagaaccggataggagatttgtggcagatacagttgctgctattgcgctgtgtgcccagaagcttccctctatcactaccagttgccttggtgggcttttggcactagtattttatggtaatactgctacttctgcatatttttgcagtaaatgattcttcttgaatataaagtttgattctaattattttacagaatcatctataagtgattctgctaactttgatggagaagctgctgttttagttcaagcaattttgtctatcaaagcaatagtgagaacagatccagcatctcatgaaaaggtatttgttttaaataagcttagcaatcttgtaactccataggtgtgtctcatttgtatacttctcaatatatggatgatgcatacttgatttgacctcatgatgcccaaccagtaatttagtacgaaatgcatgaaacctctgttgtattatacaacttatggtttttccttcatctccttggattgaaacagtttgttttgctcttttgttagtcataactcataacttggctactgaagggtgcaagaattttaagatgatacaatgtagtttattttattctctcattttaaatagaaaaggatagtccatcagactccctttatgtcacctttcaatgtgcctcccatatttcatttttgtttacttaggccccccataagttaaccagtcttgaaaatacccctcaatgaggcatgttacactatttctggtagttctattatcttttctatttattaacttatgtaagtgcatgtttaattatttcaatagttgtttcaacggtttgagtgcctttggtacttgtcagttctagcacagaatttcttgaacttacagaggtactgaaatcgtgtgataagccacacattctagtaagaatttagttttttttggggagcaggggtgtattacacaaatatgaacatatatgtgcaaagtaaatgaaaatgggatattgggaacaatttgaacaattgtttgacattcagtgtttctttttctgtttgcagtctggttgtgtatttattgaaaacatgtgcaatagtaaatattgaatattgtgtgctactttgctctattgtttgaatgtatttgttccttaattatacattaatttgatattttgctattttgctattcttttcctgaaggtgattgtacgcttggtccacagcctggacaaaattaaggagcctgcagcacgatccctgattatttggatatttggagagtatagttccataggaaatatcattccaaagataactcctgctgttctcaagtatcttgcatggtcctttgctgctgaaatgcttgagacaaagcttcagatcttaaatgctgctgcaaaggtccctccatcctccatctctccctctctgtaagaattcaaaaggttccttttctcttctgtggggatcactaattgttcttcctttacaggttatcatacattctcctgaagaacacttagaagaattcaaaaagataatggcccatgtcattaagctggctacatgtgatttgagttatgacgtccgtgatcgtgcccgttttatatcaagacttttgccatacagcacaacctatttaaatggaaacaactcctcatgtcaatcacataatgaagatatgtttaaggaactggctaatcatatatttgatgggaagatgccatcaacattccatccaaccaataactaccggatttatcttcctggttccttgtcacaggtgattcttcatgcagctcctggttacgcaccacttccaaagcctcagagtatggaattaattcataagaccatggaaccaaccagaggagtaggcaattcttctgaaagcattaattctgatgctgaatctggatcttcaacatatgatggtggttctgtttatgattcagagagtgaagttgatggctcatctgacaggaatgctgctgattctaacacaaaagataatcaagaagatcccctggtccatgtttatgatgcaagtgtagatcaaggtcagacggctagggatgtcgaggataattttgcatctctcatcactactgatttgactgaattaatgtctaagtcagccttggaaacatggcttgatgaagctcctgctgaaccagttcaggtttctacacaagcatcctctgctagagtgtcttttaccaatcggagctttgagcgaaaacctaaattgcacatgttgttagacccatctaatagtaatggtctaagtgttctttatgccttttcatctgaggtttcacccgtatcacgcttgctagtgtgtgtagacttgttatttgagaatgtttcaacaaaccaactggcagatataacaattaaatccgaggaggcttctggtagtgaggatggcttggaccaaacattacaaggatctgcaaggtactatccatctttaattggttcattttaatgtcatttcatttgtgtcgtcagaatgcttgcagtggcattctgttatctgtttgtgtttattaacttattttaattactgtctcatttattgtaatcattttggcctgcagtgttccaactattgttcttgataaagagatacaattattggctcccgaacaaacggaaaagatggttcttcaggttcacttccatcaccatctattgccccttaagttgtctgtgctctgcaatgggaaaaggcatccagcaaaacttcatcctgacattgcttattttgtgcggccactgcccatggacctaaatgcttttctatgcaaggaaaaccaactgaggggaatgtttgagtatgctagaaggtcagtaaatccccaccagtctccactatgttatacttctggtcgtgttacggacttccaccagtctccactatgttatacttctggtcatgttacgagacttccaccagtctccactatgttataatgctagctttatttgcacatattggtttctctgaagtttcagcatttagggcttatcctaataatgccataacaccaccttaagcttttcatatttgcatatttgcaatttcttgctattgcttatgggttttattacttaccaaaaaggcaatcagaacaaaaaaaaacaaaggaagagtttcttggttgttttctgtactatatcaaattaggcttcatgatcacttctatcgactatatatgctagaactaatatgaagacatcaccacaggtgcactttcaaagatcatcttcagaagcttgagcacaacgatgatagtgaagagcacactgataagaaccttctgatagcccagagcctcgcgtcaaaaatactcagcaatgccaacttccacttggtttcaatggatatgccagtgaccttcagcattgaggatgcttctggcttatgctggcgattcagcagtgagatcctgagcacttcaaacccttgcctaattaccatcctcgcggaagggcatatctcggaaccacttgacctcactgctaaggtgaactctgaagatacagcgtttggcctaaacctcctaaacagagttgtagcaatcatagaatgaagctttacgttttaacacctgtgcatttagtcttaaatgtcactttgtggatactgtaaattgttgtacattatttgcaagctatgaaggttttatagtaaaggtatccagcaaatgaattgaaatgtt</dnaseqindica>

External Link(s)

NCBI Gene:Os01g0973300, RefSeq:Os01g0973300