BGIOSGA029247

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Revision as of 09:23, 25 June 2012 by 127.0.0.1 (talk) (Created page with "{{IndicaGene| GeneName = BGIOSGA029247| Description = BGIOSGA029247| Definition = Oryza sativa Indica Group BGIOSGA029247, complete gene.| tag = | tid = BGIOSGA029247-TA|...")
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Gene Name

BGIOSGA029247

Description

BGIOSGA029247

Definition

Oryza sativa Indica Group BGIOSGA029247, complete gene.

LocusTag

'

Ensembl Transcript ID

BGIOSGA029247-TA

Ensembl Protein ID

BGIOSGA029247-PA

Length

6927

Source

Oryza sativa Indica Group 

 ORGANISM  Oryza sativa Indica Group
           Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
           Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; BEP
           clade; Ehrhartoideae; Oryzeae; Oryza.
Chromosome

Chromosome 9

Location

Chromosome 9:21420860..21427786

Sequence Coding Region

21427391..21427786,21426971..21427172,21426710..21426777,21426232..21426530,21425994..21426135
,21425371..21425578,21425032..21425130,21424914..21424940,21424553..21424771
,21424329..21424369,21424128..21424196,21423821..21423921,21423637..21423721
,21422624..21422692,21422387..21422518,21422101..21422195,21420860..21420944

Genome Context

<gbrowseImage1> name=IndicaChromosome09:21420860..21427786 source=RiceIndica09 preset=GeneLocation </gbrowseImage1>

Gene Structure

<gbrowseImage2> name=IndicaChromosome09:21420860..21427786 source=RiceIndica09 preset=GeneLocation </gbrowseImage2>

Coding Sequence

<cdnaseq>ATGGACCTCCCCGCCGTCACCGGCCGCCGCACCACCTCCTACTCCCTCCTCTCCCAGTTCCCCGACGACGCCGCCGTGCTCCAGCGCCAGTCCAGCGGCAGCAGCTACGGCGCCGGCAGCTCCCTCTCCGCCTCCAGCGACTTCCCCTTCCACCTCCCTTCCGCCGCCGCCCCCGCCGCCGGGGCCCCCGGGGGCTCCCCCTGCAAGAGCTGGGCGCAGCAGGCCGAGGAGACGTACCAGCTCCAGCTCGCCCTCGCGCTCCGCCTCTGCGCCGACGCCGCCTCCGCCGCCGACCCCGCCTTCCTCGACCCCGGCCACTCTGCCACCGCCACCGCCGGGCCCTTCCCGCTCCCACCCCCGACGCCTTCTGCCGACTCCCTCTCGCATCGCTTCTGGGTCAATGGCTCGTTATCGTACAGCAATACCATACCAGATGGTTTTTACTTGATTCATGGCATGGACCCCTTTGTCTGGTCACTCTGCACTGATCTACTCGAGGAGAACCGCATACCTTCTATTGATTCACTCAAGTCTGTCCGCCCAGATGATTCTTCCATGCAAGCCATTCTCATCGATAGAAGAACCGATTTCGATTTAGGGGTACNACCTCCCATGAAGAGAGTTTTCTTCCACGCTGGAAAGAGTGCAGTGATGCTATCAAGTCAAGTCAATGGCTCGTTATCGTACAGCAATACCATACCAGATGGTTTTTACTTGATTCATGGCATGGACCCCTTTGTCTGGTCACTCTGCACTGATCTACTCGAGGAGAACCGCATACCTTCTATTGATTCACTCAAGTCTGTCCGCCCAGATGATTCTTCCATGCAAGCCATTCTCATCGATAGAAGAACCGATTTCGATTTAGGTATGCTGGAGAATTACGCTTCCAGCTTCTTGTCCAGTTCTGCCGACATGAAGGATGTGATAAACCAGCTAGCCAAGCTTGTGTCTTCCAGAATGGGGGGTACAACCTCCAATGAAGAGAGTTTTCTTCCACGCTGGAAAGAGTGCAGTGATGCTATCAAGTCAAGTACAGGGTCTATCGTTCTCCATCTGGGAAAGTTACCTATCGGTTTCTGCAAACACCGCTCTTTGCTATTTAAAGAGTATTTGGTTGATCTAATTGGGGATCCAGGCCAATTATCTGATCCTGATTCGTTTGTCAATGGACCCTACTCACTATCAGTGCCCTCACCTCTCCGGCCTCCAAAATTTAGGTCATTGGAGATCACATCAAATTTCAGCTCGGTTGCCAAGCAGTATTTCTCAGATTGTCACTCTCTCAATCTCTTATTTAACGAAGCTTCCACAGGTGCTAATAGTAATGCGGCAGTTGCTATGGACCAACCGTATTCTACTAGAAAGCATGACACAAGGGATGACATTATGAGCAGCTGGGTGCCAGTAAAAGCTTATATCCATATAATGGCACAACAAAGTCAAGCAGCTGTAAGCTCAGATGCTATTCTGCCAGAGGCTCCCCGAGAAGTTTTACCGCTTATTACTTCCTCCAACTTGAAAGCTGAGAAAAAGAAAGAGTTTAAATTAATAGAGGGGAATCAGTACTTACGAAGTACAGTCAGTGATCTCTCACTTGCTGTGGATGATCTGATCATTCCATGGAACGAATTGATTTTGAAGGAGAAGATTGGAGCAGGTTCATTTGGAACAGTTCATCGTGCTGACTGGAATGGATCGGATGTTGCTGTGAAGATACTTATGGAGCAGGATTTTCATCCAGATCGCTTCAGGGAGTTTATGAGAGAGGTTGCAATAATGAAAAGCCTGAGACATCCAAATATTGTTCTTTTCATGGGTGCTGTTACTGAGCCTCCCAACCTATCAATAGTTACAGAATACTTGTCAAGAGGTAGTTTGTACAAATTATTGCACAGGAGTGGTGCGAAGGAAGTTCTTGATGAAAGACGTCGCTTGAACATGGCATTTGATGTGGTATGTGACTTTGGCCTTTCACGACTAAAAGCCAACACCTTTTTGTCCTCCAAGTCTTTGGCAGGAACTCCCGAATGGATGGCACCTGAAGTGCTCCGAGATGAACCATCCAATGAGAAATCTGATGTCTACAGTTTTGGTGTAATCCTATGGGAACTTATGACAATGCAACAACCATGGTGTAATCTGAATCCTGCCCAGGTAGTCGCTGCTGTAGGCTTTAAAGGCAGGAGACTTGATATCCCAAAAGATTTAAATCCTCAAGTGGCTGCATTAATTGAGTCGTGCTGGGCGAAATCTGTTGATATTCCTTGTATGAACATCTGGTTGGCCAAGTTATCCATGAGATGCAGCACTTCACTTGTCTGCATCCTTTACTGA</cdnaseq>

Protein Sequence

<aaseq>MDLPAVTGRRTTSYSLLSQFPDDAAVLQRQSSGSSYGAGSSLSASSDFPFHLPSAAAPAAGAPGGSPCKSWAQQAEETYQLQLALALRLCADAASAADPAFLDPGHSATATAGPFPLPPPTPSADSLSHRFWVNGSLSYSNTIPDGFYLIHGMDPFVWSLCTDLLEENRIPSIDSLKSVRPDDSSMQAILIDRRTDFDLGVXPPMKRVFFHAGKSAVMLSSQVNGSLSYSNTIPDGFYLIHGMDPFVWSLCTDLLEENRIPSIDSLKSVRPDDSSMQAILIDRRTDFDLGMLENYASSFLSSSADMKDVINQLAKLVSSRMGGTTSNEESFLPRWKECSDAIKSSTGSIVLHLGKLPIGFCKHRSLLFKEYLVDLIGDPGQLSDPDSFVNGPYSLSVPSPLRPPKFRSLEITSNFSSVAKQYFSDCHSLNLLFNEASTGANSNAAVAMDQPYSTRKHDTRDDIMSSWVPVKAYIHIMAQQSQAAVSSDAILPEAPREVLPLITSSNLKAEKKKEFKLIEGNQYLRSTVSDLSLAVDDLIIPWNELILKEKIGAGSFGTVHRADWNGSDVAVKILMEQDFHPDRFREFMREVAIMKSLRHPNIVLFMGAVTEPPNLSIVTEYLSRGSLYKLLHRSGAKEVLDERRRLNMAFDVVCDFGLSRLKANTFLSSKSLAGTPEWMAPEVLRDEPSNEKSDVYSFGVILWELMTMQQPWCNLNPAQVVAAVGFKGRRLDIPKDLNPQVAALIESCWAKSVDIPCMNIWLAKLSMRCSTSLVCILY</aaseq>

Gene Sequence

<dnaseqindica>1..396#615..816#1010..1077#1257..1555#1652..1793#2209..2416#2657..2755#2847..2873#3016..3234#3418..3458#3591..3659#3866..3966#4066..4150#5095..5163#5269..5400#5592..5686#6843..6927#ATGGACCTCCCCGCCGTCACCGGCCGCCGCACCACCTCCTACTCCCTCCTCTCCCAGTTCCCCGACGACGCCGCCGTGCTCCAGCGCCAGTCCAGCGGCAGCAGCTACGGCGCCGGCAGCTCCCTCTCCGCCTCCAGCGACTTCCCCTTCCACCTCCCTTCCGCCGCCGCCCCCGCCGCCGGGGCCCCCGGGGGCTCCCCCTGCAAGAGCTGGGCGCAGCAGGCCGAGGAGACGTACCAGCTCCAGCTCGCCCTCGCGCTCCGCCTCTGCGCCGACGCCGCCTCCGCCGCCGACCCCGCCTTCCTCGACCCCGGCCACTCTGCCACCGCCACCGCCGGGCCCTTCCCGCTCCCACCCCCGACGCCTTCTGCCGACTCCCTCTCGCATCGCTTCTGGGTGATCACCTCATCTCTTCACCACTCCCATCTATTTCTAGTATTTGTTTACACACCATCACACATAGCTTGATTTGGATTAGAGATCAGAATGCATGATTGCTCTATCCGACCCATCCTAGTAGCCTGCAGCAATTCTATCTCTTCTGCTGAGCTCCTAAACCCGCTATATCAATCTCATTTCTCAAGCTCTTCGATGCCCTCTTTTTAACATTTCAGGTCAATGGCTCGTTATCGTACAGCAATACCATACCAGATGGTTTTTACTTGATTCATGGCATGGACCCCTTTGTCTGGTCACTCTGCACTGATCTACTCGAGGAGAACCGCATACCTTCTATTGATTCACTCAAGTCTGTCCGCCCAGATGATTCTTCCATGCAAGCCATTCTCATCGATAGAAGAACCGATTTCGATTTAGGTATGCTGGAGAATTACGCTTCCAGCTTCTTGTCCAGTTCTGCCGACATGAAGGATGTGATAAACCAGCTAGCCAAGCTTGTGTCTTCCAGAATGGGGTGACTATTGTACAACTAATCTACTCATCAAAAGTGTCTTTGTATCGTCTTGTTTCTGTGGTTTCTAATACTATTTTTTTTGTTTCAATCATGAAGGGGTACNACCTCCCATGAAGAGAGTTTTCTTCCACGCTGGAAAGAGTGCAGTGATGCTATCAAGTCAAGTACAGGGTCTATCGTTCTCCATCTGGGAAAGTTACCTATCGGTTTCTCATACACCGCTCTTTGCTATTTAAAGTACGTTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNATCAATCTCATTTCTCAAGCTCTTCGATGCCCTCTTTTTAACATTTCAGGTCAATGGCTCGTTATCGTACAGCAATACCATACCAGATGGTTTTTACTTGATTCATGGCATGGACCCCTTTGTCTGGTCACTCTGCACTGATCTACTCGAGGAGAACCGCATACCTTCTATTGATTCACTCAAGTCTGTCCGCCCAGATGATTCTTCCATGCAAGCCATTCTCATCGATAGAAGAACCGATTTCGATTTAGGTATGCTGGAGAATTACGCTTCCAGCTTCTTGTCCAGTTCTGCCGACATGAAGGATGTGATAAACCAGCTAGCCAAGCTTGTGTCTTCCAGAATGGGGTGACTATTGTACAACTAATCTACTCATCAAAAGTGTCTTTGTATCGTCTTGTTTCTGTGGTTTCTAATACTATTTTTTTTGTTTCAATCATGAAGGGGTACAACCTCCAATGAAGAGAGTTTTCTTCCACGCTGGAAAGAGTGCAGTGATGCTATCAAGTCAAGTACAGGGTCTATCGTTCTCCATCTGGGAAAGTTACCTATCGGTTTCTGCAAACACCGCTCTTTGCTATTTAAAGTACGTTTGGCTTCTCTCTCTTTTTTTCCCTGTGTGTGTGTATCCCTAAGTTACTTTCCTCTTTGCCCATTTGTTGAAATTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGCTTGAAAGGTACATGCCTTGTGAGTTGTGAAGATATGTGAATGATTATCCTTTTAATACCTTGTCTATTACCTAGTTTTGAGACACCAGCATTTCTCTACCCAGGTGATCTTACTGTCACATGGTAACCAAAGTGTTCTTGTAAATATAACCCATGAACTTATGCTTTGCTGCCACATGGAATATTTGCCATATCAACCTGTAATTTTTGTAATGCTGATTGGTTGCTAGGATATTGACTTGGTGTATGTTGTAAATCTTTCTTTATATTTTCATTTTGGCAGGAGTATTTGGTTGATCTAATTGGGGATCCAGGCCAATTATCTGATCCTGATTCGTTTGTCAATGGACCCTACTCACTATCAGTGCCCTCACCTCTCCGGCCTCCAAAATTTAGGTCATTGGAGATCACATCAAATTTCAGCTCGGTTGCCAAGCAGTATTTCTCAGATTGTCACTCTCTCAATCTCTTATTTAACGAAGCTTCCACAGGTTTTTAACTTCATTACTTTTATCACTTCTTTTTTCTGAGTTTATCCCTTCACTGTTTAAGTGTCAATAGTGCTTCATCACCCCCGCAAAAAAAAAAAAAATAGTGCTTCATCACATATATAATTTTCCATGAAGTAGTTGGTAATTCGTTATAGGCCGAAAAGAGGATTGTCATCTAGGATAGTTAGGTCTATGCAGTCTATCAGGTGTGACACAGACCCCACATCTCTTATGTTTCAGGTGCTAATAGTAATGCGGCAGTTGCTATGGACCAACCGTATTCTACTAGAAAGCATGACACAAGGGATGACATTATGAGCAGCTGGGTGCCAGTAAAAGGTAATATAGCTCATGACAATCTACTAGGATTCGTGAACAAACTGTTTCCTTTTGTTGACTATTATTAAATATATCTTCTTTTCTGAACCAGCTTATATCCATATAATGGCACAACAAAGTATGTACTCCAAAATTATCACTTTGCTGCCTAGGCTAGAAAGTCCAAAGATATAAACAGTTGCATGACCACTATACTTCGATATGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTTTGTCTTGAGTCATTTTTTTTATGTAGGTCAAGCAGCTGTAAGCTCAGATGCTATTCTGCCAGAGGCTCCCCGAGAAGTTTTACCGCTTATTACTTCCTCCAACTTGAAAGCTGAGAAAAAGAAAGAGTTTAAATTAATAGAGGGGAATCAGTACTTACGAAGTACAGTCAGTGATCTCTCACTTGCTGTGGATGATCTGATCATTCCATGGAACGAATTGATTTTGAAGGAGAAGATTGGAGCAGGTACATGCAAATAAAATTTGAAATTTCAGGAATTTCTATCCCATTGCCAAATAAAAGAGCATTTTCTATAGCAATCTTAGCATTTTAGTCATACTTGTGTTATGGTTGACTTAACATAATTGCATGTATCTTGACTACTAAATGTACAACTTTGTGATGTTCATAGACTTACTTTCCTTACAGGTTCATTTGGAACAGTTCATCGTGCTGACTGGAATGGATCGGTATGCCTTTTGCATGTTTTATTTATTGATAATCCTCACTGAACTCTTAATGGTTCAGTGTTTTTAACTGAATGAGCCCTTTGTGCTGAATGTTTTGGACTCAATATTGGAATGAACTTTGTATTACCATAGGATGTTGCTGTGAAGATACTTATGGAGCAGGATTTTCATCCAGATCGCTTCAGGGAGTTTATGAGAGAGGTTTGTTTAACTTTTTCTTTGATGCGGTAAAGGCCTTTGAGCTTGCTATTTCCAGTATTATGTTTCTTCATTCCTGAAAAATAGTATTATGCTTCTTGAATGAATGGCTACTAGCCACAATGTGTTGTGCCCTGGCCGTGTTTATGCATTTATAGAGCATTCCCATCCTTAGTACTCACCTTATGAGTTTCTTCTCATTGTTATAGGTTGCAATAATGAAAAGCCTGAGACATCCAAATATTGTTCTTTTCATGGGTGCTGTTACTGAGCCTCCCAACCTATCAATAGTTACAGAATACTTGTCAAGGTATGGTTGTGATGTGCCTTCAAGCTATTCCGTTAATTATCTCAATCATTTGATAGCAAGTTTAATGTGTCCAGCAAGTGATGCCATTTTTCATTGCAGAGGTAGTTTGTACAAATTATTGCACAGGAGTGGTGCGAAGGAAGTTCTTGATGAAAGACGTCGCTTGAACATGGCATTTGATGTGGTATTGTATTATCTCATATTCTCTTTTTTGTGACTTTGTCTACCTGCTTTCACATGAACTTTTAACTCCCAAAACAAGAATTCATACTATTTAAGTAATCTCTGGTTGCTTGACAGGCAAAGGGAATGAACTATCTACATAAACGTAGCCCTCCTATGTTCATCGTGATTTGAAGTCTCCAAATCTTCTAGTTGACAAGAAGTATACCGTGAAAGTATGTTTCATAACTTATACACCTGATTGCAGCTAGACAGGGTATGATAGTATGTTTTATGAGTGCATGAGTAGATGATTATAAATCACGTTGATCTTGCTGAAATTGTGGTGTTAGTTTTTGTGATGGATATTTGTGTGAACTTTTGGGTTTTTGCTGTACTACTGTACTGTACACAATTTTTAATGCGTTTTAAATCTTGTCTTTTTATTATTATTATTATGTTTTCCTTGTTACCTTCTGAGCAGAAGGATTGAGTTCTTCTAGTGAGTATTTGATAGGCAGCTAACTGATAACGGACAGCACTTCTATTATTGAGGTGGGGGGTATTTGGAGCTTGTAGTCATTTAATGCAGGATGCTTCTGCAAACTCAATAATATGGATAAATATATATTTATAGGTCATGATTTTCTGTAAACATATTTAAGGAAGTACTTACAAGGACTGCTAAGTGTGCTAAAAAATGCTAACATAGCCGTTGACTTGACATAGTATGTGATGTTCAGGCATGTTTCTTTTTTTTCTCCTCCTCAGAGGTTGTATCTGAGATGATTGTGTTAGTGCAACTATTTTGTGGATCGCTAAGGTGATCGTTTTAAAGATTATTAATCATTATATGGATTTGTTTGTAGCAGATCTAATCCCCATTTCTTATTCTTATCCACACTACATGTTATTGAATAAATCCCAGTATTTTTCACTTACCTTTCACCCTTTTAACTTTTGTAGGTATGTGACTTTGGCCTTTCACGACTAAAAGCCAACACCTTTTTGTCCTCCAAGTCTTTGGCAGGAACTGTAAGTACCATTTCCATTCTTCAGAAGTTCACCCTTCAATCCCTTTTTCATTGAAAATATTATTCATCTTTGGCTTATCTTGTTCTTTTTCCATTTAAATATTAGCCCGAATGGATGGCACCTGAAGTGCTCCGAGATGAACCATCCAATGAGAAATCTGATGTCTACAGTTTTGGTGTAATCCTATGGGAACTTATGACAATGCAACAACCATGGTGTAATCTGAATCCTGCCCAGGTAATTATTCCCTTCTATCTAATTTTTTGTGTCCATGCTGATGAAGTGATGCAATTAGTCCTTGGTATCATTCAATGCATGCATAACATATTTTTCTTATCTAGAAGCAAGTATACTCCTGAAGTTATGCAGATCATTTTTTTTTAAAAAAAAACTTTTACCATTTTACATGATGCTATGTTTTTCTGCAGGTAGTCGCTGCTGTAGGCTTTAAAGGCAGGAGACTTGATATCCCAAAAGATTTAAATCCTCAAGTGGCTGCATTAATTGAGTCGTGCTGGGCGAAGTATGCATTGACCCATCTATTTTTGTATATGAATCAATTCGCAATGACATGCGAGACTAACGGCAATTTTGTCTGTTACAGTGAGCCATGGCGGAGACCTTCATTTGCTAATATTATGGATAGTTTGAGATCTTTAATTAAGGTTCCACTGCCGCAGTTGATTCGTTCAGACTCATAGCCATTTGTATATTGAAGAGTCATATCATGATTTGCCTTGATAAGATCAACATGGAGAAGTTTTTCAATATCTGACTTGCTTATACTTGGATAATTCTGACCACATTATTTGGTGCTAAGAAAATGGAGTCTTGATTTACATTTTTCAAGCAAAACAAAACGTACCTGGCAACTCCTGTCCATGGTTTCAAGGTATGTTGCTACTTGCAGAGTTTACCTTCAATGTAAATATATAACCAAGACCTTGGATTGGTACCACATCAGCGAATTGAGCTTAAATAAGGTTTTGGTTTCAATTGAATGCAGACTTGCTGATTAGTGATAAATTGTATCGTTCGCAACCATTGAACTGGACAGTCTTTGTTATCTCGTCATATCCTTCAGTCTCAATTTTATCGTATTCCCCAATCTGTATAGACACATTGAAAACAAACGGATGAGTTAATATGTATCAAACGGTGTCTGCTGTCTAATTAGCTGATCCATCCAATATTCCAATTATAATGTGTTCTAACTCTTCAGTGCACATATAAAATTTGTTTTGTCCAAGCTGAGTGCTGTTGCTGTTAATATATCTGAGTGAGACTACAGTACCGTTGACTTTGGGTGTCATTATTTGAATTTACACGGCGTTGCTGTTTTCTGATTCTAAACTGATAGCATTAGTTATGTTAAGCATGGCAGTTACTAGCTTGTTATGGTCTGGAGCCGGGGACAGGTTACGGGGTAGTAACTGGCCAGAATGATATGGATTTAAATAAAAAATATATTAATTTTTACATATGTAAATTTAGAATTATTCTGTCCGGTTACCGGTTGCTGGCCAAACTAAGTTCTGTTCAGAATGGCTTGTTTGTGGTGACTGTCAGCTCATAATAGAACATAAGGATTTCTATGTATAGTTCAATGGAGTGTGTGCTTGCCTACTGGGTCACCTTTATTTAAGAGTTCGTAATTTTGACCTTGTTGCTAATTGCAGATCTGTTGATATTCCTTGTATGAACATCTGGTTGGCCAAGTTATCCATGAGATGCAGCACTTCACTTGTCTGCATCCTTTACTGA</dnaseqindica>

External Link(s)

EnsemblPlants:BGIOSGA029247

Retrieved from "https://ngdc.cncb.ac.cn/ricewiki/index.php?title=BGIOSGA029247&oldid=28451"