BGIOSGA029434

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Revision as of 09:26, 25 June 2012 by 127.0.0.1 (talk) (Created page with "{{IndicaGene| GeneName = BGIOSGA029434| Description = Putative uncharacterized protein| Definition = Oryza sativa Indica Group BGIOSGA029434, complete gene.| tag = OSJNBB0...")
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Gene Name

BGIOSGA029434

Description

Putative uncharacterized protein

Definition

Oryza sativa Indica Group BGIOSGA029434, complete gene.

LocusTag

OSJNBB0034B12.20

Ensembl Transcript ID

BGIOSGA029434-TA

Ensembl Protein ID

BGIOSGA029434-PA

Length

6750

Source

Oryza sativa Indica Group

 ORGANISM  Oryza sativa Indica Group
           Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
           Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; BEP
           clade; Ehrhartoideae; Oryzeae; Oryza.
Chromosome

Chromosome 9

Location

Chromosome 9:18922890..18929639

Sequence Coding Region

18929406..18929639,18929226..18929267,18929042..18929139,18928369..18928444,18927864..18927992
,18927735..18927781,18927297..18927420,18927084..18927200,18926394..18926423
,18926203..18926302,18925577..18925683,18925241..18925384,18925050..18925154
,18924334..18924480,18924151..18924204,18923940..18924005,18923747..18923791
,18922890..18923051

Genome Context

<gbrowseImage1> name=IndicaChromosome09:18922890..18929639 source=RiceIndica09 preset=GeneLocation </gbrowseImage1>

Gene Structure

<gbrowseImage2> name=IndicaChromosome09:18922890..18929639 source=RiceIndica09 preset=GeneLocation </gbrowseImage2>

Coding Sequence

<cdnaseq>ATGACGCCGGTGCAGGCGGGGGCGGCGCCCGCGTCGCCGTCGGCGGCGGCGGCGCTCGGGTTCCTCCTCCCGACCTGCTGGGAGATCGAGGTCACCTGCGCCGCCGCGATGATCCTCGTCGCGCTCTACGCCGCGTACGAGCTGCTCGCCCCGCGCCCCGCGTCGGCGGCGGGGGGATCCTCCGCCGCCGGGGACGACCTCCTCCTCGTGCGGGACCTCGACGGCGCCGACAAGTACAAGGGTGGCTCGAGTGGGCCCTCGGCGTACGTGGTGAAGCTAGAGTTGTTGGCTGCGAAGAATTTGATTGCGGCAAACTTAAATGGGACCTCGGACCCCTACGCATTGATCACTTGCGGCGAAGAGAAGCGTTTCAGTTCCATGGTTCCTGGCTCAAGAAACCCAATGTGGGGAGAGGAATTCAATTTTTTTGTTGACAGTCTTCCTGTAAAGATAAATGTGACAATATATGACTGGGACATTGTATGGAAAAGTACTGTTCTTGGTTCTGTTATTGTTCCAGTTGAATCCGAGGGACAGAGTGGACCAGTTTGGTATACGCTTGATAGTACATCAGGCCAGGTGTGCCTACATATTAAGGCAATCAAGGTCCATGAGAGTTCATCGAGGGCTCTAAATAGCTCTGCTGAGGCTGGTGCTCGTAGAAGAATTTCCTTGGATAAACAAGGACCCACTGTAGTTCATCAAAAACCAAGTCATTTGCAGACGATATTTGGACTTCCTCCAGATGAGGTTGTTGAACATAGTTATTCATGTGCACTTGAGAGGTCATTTCTGTATCACGGGCGCATGTATGTCTCTTCATGGCACATTTGCTTCCATTCAAACGTCTTCTCTAAGCAGATCAAGGTTATGCTTCCGTTGAGGGATATTGATGAGATAAGAAGAAGCCAGCATGCAGTTATTAATCCAGCAATCACGATATTTCTTCGAATGGGAGCTGGAGGACATGGGGTTCCTCCCTTAGGAAGTCCCGATGGAAGAGTCAGATATAAATTTGCATCATTTTGGAATAGAAACCATACATTTAGAGCATTGCAACGAGCTGTCAAGAACTTCCATACAATGATAGAGGCTGAGAAACAGGAACGTGCTCAATCTGCATTACGTGCACACAGTAGCTCAAGAAAAAGTAGCATGAAGGAGATAAATGTTCCAGAAGATTGTGCTGATTTAACAGGCCAATTACAACCTTTTGTCAAAGAGGAAGTTCTAGTCACTGTATTCAATGGATCTTTTCCATGTACTGCAGAGGAGTTCTTTAATACTCTGTTAAGTGATGATTCAAGTTACATCACGGAATTTCGGACAGCTCGAAAGGATAAAGATATCAATTTAGGTCAATGGCACCACGCTGATGAGTATGATGGTCAGGTGAGGGAACTTAATTGCAAATCAATATGCCATAGTCCAATGTGCCCCCCATATTCAGCAATGACAGAGTGGCAACATATGGTTCTTTCAGCTGACAAAACAGATCTGGTATTTGAAACTGTACAGCAAGTACATGATGTTCCATTTGGTTCCTTCTTTGAGGTACACTGTAGATGGTCTGTGAAGACTACCAGTTCTGACTCATGCAGTCTTAACATTAGTGCTGGTTGGTGCATAATGCAGTCGAAGATAAAGAGTGGTGCTGTGGACGAGTACAAGAAGGAAGTCCAGGAGATGTTGGAATTTGCAGAGTCGTATATGCGCAAAGTTAGAACTTCTAACCAAGACAATGGTAGTACACCTACTGAGCAAGACAACGGCGCTGTGACTGAGCAAGAAAATGTGGCGCCGGATAATACACCAAATGATGAATAA</cdnaseq>

Protein Sequence

<aaseq>MTPVQAGAAPASPSAAAALGFLLPTCWEIEVTCAAAMILVALYAAYELLAPRPASAAGGSSAAGDDLLLVRDLDGADKYKGGSSGPSAYVVKLELLAAKNLIAANLNGTSDPYALITCGEEKRFSSMVPGSRNPMWGEEFNFFVDSLPVKINVTIYDWDIVWKSTVLGSVIVPVESEGQSGPVWYTLDSTSGQVCLHIKAIKVHESSSRALNSSAEAGARRRISLDKQGPTVVHQKPSHLQTIFGLPPDEVVEHSYSCALERSFLYHGRMYVSSWHICFHSNVFSKQIKVMLPLRDIDEIRRSQHAVINPAITIFLRMGAGGHGVPPLGSPDGRVRYKFASFWNRNHTFRALQRAVKNFHTMIEAEKQERAQSALRAHSSSRKSSMKEINVPEDCADLTGQLQPFVKEEVLVTVFNGSFPCTAEEFFNTLLSDDSSYITEFRTARKDKDINLGQWHHADEYDGQVRELNCKSICHSPMCPPYSAMTEWQHMVLSADKTDLVFETVQQVHDVPFGSFFEVHCRWSVKTTSSDSCSLNISAGWCIMQSKIKSGAVDEYKKEVQEMLEFAESYMRKVRTSNQDNGSTPTEQDNGAVTEQENVAPDNTPNDE</aaseq>

Gene Sequence

<dnaseqindica>1..234#373..414#501..598#1196..1271#1648..1776#1859..1905#2220..2343#2440..2556#3217..3246#3338..3437#3957..4063#4256..4399#4486..4590#5160..5306#5436..5489#5635..5700#5849..5893#6589..6750#ATGACGCCGGTGCAGGCGGGGGCGGCGCCCGCGTCGCCGTCGGCGGCGGCGGCGCTCGGGTTCCTCCTCCCGACCTGCTGGGAGATCGAGGTCACCTGCGCCGCCGCGATGATCCTCGTCGCGCTCTACGCCGCGTACGAGCTGCTCGCCCCGCGCCCCGCGTCGGCGGCGGGGGGATCCTCCGCCGCCGGGGACGACCTCCTCCTCGTGCGGGACCTCGACGGCGCCGACAAGGTAACGGGGGGACTGGCTTTGGGGTTTTTTTTGGGGGGGGGGGGAATTTTTGCGAGGCTATTGGCGTTGTTGATCACTGATGATTTTCTACTAATGCTGCGATCGCTTCGTCGGCTGGTTGCGTGTGGATTTCTGCAGTACAAGGGTGGCTCGAGTGGGCCCTCGGCGTACGTGGTGAAGGTGAGCAGCGATCGATCAATCCTTCTCTCTCCATTTTTGTTGCCTATTGTGCAGATGGTTTGTGTAACTCGGATGTGTTTGTTCAGCTAGAGTTGTTGGCTGCGAAGAATTTGATTGCGGCAAACTTAAATGGGACCTCGGACCCCTACGCATTGATCACTTGCGGCGAAGAGAAGCGTTTCAGGTGATCATGTTGATTTAGTAATGTTCACCATTTTTAATTTCGATCATTTTGACCCGTATGTTAGGCATTAACTGTATATACGTGTATGGCTCATGTTTCTAACTCATATGTGAATATAAGAGTGTAATCTGTTCATCCTTTGCCACTTTCTACCTTTTTCAATGAGAACCATAATGTACATGGAGGCAAAACTAACGTTAAATGAAGAAAAATGAGTTTTCTATAAAGGAGTGTTTATTGATTGAATTGAAGGGTAATTGGAGGATAGGTTGAGTTTGATTTATGAATAGCAGACAGGTAATAGGAAAGGAGGAAATACTTGATTTTCCCTTAAGATTGTGCCAACCACCAAATATCTCAGGAAATCAGATAAAAGGGGGTGAGGGTTTAGTTTTTGCTATATACTAAAGTCTGAAGTGTCTGATCCACATGCCACCTGAAAAGGTTTCTGTGGGAAAAGGTGGTGGTGCAAAATGGAATGATGAATGTTCTGGTACAAGACGATATTATTCTCTTTTATAAAATTATAGTGTGTAAAGCAGCTACTGTTTGAGTTGTCTATTTATCCTCCTTTTTATCCCTCTTTATGCCTTACAGTTCCATGGTTCCTGGCTCAAGAAACCCAATGTGGGGAGAGGAATTCAATTTTTTTGTTGACAGTCTTCCTGTAAAGGTTATTCCCAGTACCCTTTTCTGCTATTTTGGACTCTCTTATAAGATGCAATGCTTATTCAGGACTTCTATACCAAAGCTTGTCAGACTTCTTGGTGCACAACTTTAGTGTCAGAAAAAATATGCACTGTTGTTGTAATAGCCTTGTAACATAGGACTACCTGGCTCAAATTGGACTGTTTTTCTTGCGAATTCGTTAGTAGTTATACTTCAATTTGAAGGTTTACCACCACATTGCTGCAAATTCACTGTTGCTCTTATCTAGCTATTTCCACTGATAGATACCTATCACATTTTTTGAAGTTTTTTTAAATAAATATAGAATTGTGAGTTTCACTTTGCTTCTTCTCACTCATTTGTTCTCTACACTTCCATAGATAAATGTGACAATATATGACTGGGACATTGTATGGAAAAGTACTGTTCTTGGTTCTGTTATTGTTCCAGTTGAATCCGAGGGACAGAGTGGACCAGTTTGGTATACGCTTGATAGTACATCAGGCCAGGTGAATGATACGTACAGAAACCGCTTGGTCTCTTAAGCTACATTTTTATATTCAGTTTTCTTATTGTAATCTTTATGGTCAGGTGTGCCTACATATTAAGGCAATCAAGGTCCATGAGAGTTCATCGAGGTCAGGCCTTGCTCTTTCTTTATTCATTATTGTTTGATGTTTCTACAGACTTTGTTCTTACCTGTAGTTTACTTTAAGTGTGAAACTGTTATTCAGAGTTTGTACGAATAATCAGGTTTTAAACAGTTTCGAACTTGGTTGCTTTTATTTTAGTTTGCCCTTTCAGATGACATTATATATTTTTTTTGTAGTGTTCAATATGCTAATAGTTTTGTTTAACCGTTTCCAACTATCATTTTGATATTTGACCCATTGTTGTATTATATTGCCAACTATCATCTTGTTAGTCTTAGCCTTTATTATTTGTTTTTTAGGGCTCTAAATAGCTCTGCTGAGGCTGGTGCTCGTAGAAGAATTTCCTTGGATAAACAAGGACCCACTGTAGTTCATCAAAAACCAAGTCATTTGCAGACGATATTTGGACTTCCTCCAGATGAGGTATGTAACTATCTGAACTATTCTTCTTGTTTTTATGCATAGAAACACGATTCCTAATGGCAAGTTTTACTTGTTCATTTCTTTCCCCTTTGTCAGGTTGTTGAACATAGTTATTCATGTGCACTTGAGAGGTCATTTCTGTATCACGGGCGCATGTATGTCTCTTCATGGCACATTTGCTTCCATTCAAACGTCTTCTCTAAGCAGATCAAGGTTAGCTCATATACAGATTATTTTAGTTGGCATCCTTCCGTTGATGCAATTAGTTTAGGTTCTATATTTCACTTCATTTTTATATTATGTTTATCAGAAATCATTCAGTTATTTTGAATGTTCTGCTGATTTTACCAGCGGTTTCCATCTAAACAAGATAATAGGATACATGACCTTTGTGACTATCAAAAAAAGGATAGTGGAGTAAATGTGGATAATTAATGCGTTCACTTTTCAGGGTTAACAATAACAGCACAATAATGCTATTTTTGTTTATGTAGTTTTTGGTTAAATCTTGTTATAACCATGCACTTCTGATTGAGTTCTTACAGAAAAACCAACAGAATATCAGCAAAATCTTCCGATAGATCATTGGAAACTAAGCATTGCACCTAAATGGTTATCACTGTTGCAAGATTTCCATACTAACTGTTATGCTTTAGTTCTATTCCAAAATCCTAACCAGTGAAGCCACCGGTCCTGGTCTGGCGATTATCTGATTGAATTAGATTTTTGTAATTGATTTGTAGTTTACGAGCTTAGGAAAATTACACTGTGCCAGATGGTTTGTCTTAAAAATAAGTCCATCTATTATCATTTACTTCAGTTGATATATATGCTTTACTCATGTAACTAACAATTCTTTTCATTTTTATGAAGGTTATGCTTCCGTTGAGGGATATTGATGAGGTGATTACTATACTATTTCCTGTGATCTCTTCATGATTTCTTGCTGCACATGTTAATTTGCCTTTTCTTTCTGTTATTACAAGTACTGCAGATAAGAAGAAGCCAGCATGCAGTTATTAATCCAGCAATCACGATATTTCTTCGAATGGGAGCTGGAGGACATGGGGTTCCTCCCTTAGGAAGTCCCGATGGTAAGCTCTAACACTAGCAAGTCTGCACCTTTGCCTCTTCCTCTTTTTAGCACTACATGGACAGCAGTGCTAACTCAAAAGTTCATCTTGAATTATATTATTTGGATCCCACTTCATGCTTCTCGCTCTCAACAGCAAAACATGTTGTTGGTATTACACTATTACTCATAAGTTAGTGTAAATTTGAGTGCTGTGAAGGTTTGTTACTACTTACCGGACTAAATTACATGCCTCTAGCTTGCTTGAGAACTGAATGCATGCATATCCTAAATTGAGTCGTATATTTTTCTTGATGCAACAAAATTGGTAGCAAGCTAGAATTGCATATATGTGGATAAAGCTAAATGGTCATTATTGAAGCAGATCAATACCCTTACAATGGAAAGAACCGATAACCAAAGTTTAGCAAAGATATGGCAATTTTTTTGGAGACAGCCAAAGGACTGGAAGACGTAAGATTTGATACATGACGAACTGCTTCATGAGTTCATAACACTCTGTTTATGTATATTTCTGCAGGAAGAGTCAGATATAAATTTGCATCATTTTGGAATAGAAACCATACATTTAGAGCATTGCAACGAGCTGTCAAGAACTTCCATACAATGATAGAGGCTGAGAAACAGGTACTGATCATGTATATAGGTGTAACACCCTAGACCTTTACTCTTACATTATTCCTCGAAGTTTGGATATTAATCTTTATGAGGCATTTTACATATTTGCTGTCTTACTGTCAGTGAACTTTCTACAAATATGATATCTATAAGTTGGATCAGAATTGATAATCTGTTTTACATTTGGATTTTGAATTCTAGGAACGTGCTCAATCTGCATTACGTGCACACAGTAGCTCAAGAAAAAGTAGCATGAAGGAGATAAATGTTCCAGAAGATTGTGCTGATTTAACAGGCCAATTACAACCTTTTGTCAAAGAGGAAGTTCTAGTCACTGTATTCAATGTAATAATGTCTAACTGTATATTTGCTTCAGGAATATGTAGTTTATGACACGGCTGATGTTTAACTCTGACTCTATCTAATTTCAGGGATCTTTTCCATGTACTGCAGAGGAGTTCTTTAATACTCTGTTAAGTGATGATTCAAGTTACATCACGGAATTTCGGACAGCTCGAAAGGATAAAGATATCAATGTAAGTCTGCTGATGATACCTCACATCCAAGTAGATAGTCGTACTAAATTGGCAATTCATTAGTTGATAACCCTAATGGATGTTGATCTAGTTTCGAAAAGTTGTTGGTTTAAAACTTTTAACCGGAGCTTTTCAGCCAGTGTGAAGGAGGTGAATATGTGGCTCTGCTGAACTTATGGCATTGTGTTACTGATCTCAATGGGGGTGCACAGCTGACTGAGAACCAGTATATGAGACCTATTGGCAGCCAGTCTCATTAGTTTTTGTGGGACTGAAAGGATTACGTATTTACAGTAGAGATTGGTATGCTATATGCTAGTCTAAACTCTAAACTATAAACGTGTGTTGTCCATCTTCCATGCATATTTTGATAGTTGGTAAGCTTCCATATTCTAGTTTTATGCTAAGTCTGGGTAAGATGCGCAAACCGATTATTGAATAACTGAATCTGCTAGAAAGGATCGCAGAGGACAGTAGTATCTATCTTTTGCTTTAACAGCACTCAGCAGCCTGAGGGACTATGGGTTCTCTTGGCATTATAGCCTACTAAAAATGGTTTCATTCTGCAGTTAGGTCAATGGCACCACGCTGATGAGTATGATGGTCAGGTGAGGGAACTTAATTGCAAATCAATATGCCATAGTCCAATGTGCCCCCCATATTCAGCAATGACAGAGTGGCAACATATGGTTCTTTCAGCTGACAAAACAGATCTGGTACGTTTCTAATGTGCAGCTGAATGTTCCTATATGGCTTGATATAATAGTTCATGAAGCACAGCAATTCCTATATATTATCTGTACTTTATATCATAAGTAGTACTAACTTTTGCTGTTTACTTATAGGTATTTGAAACTGTACAGCAAGTACATGATGTTCCATTTGGTTCCTTCTTTGAGGTACTTGTTGTTGTTGGCATAGTTGTTATGGAATATATGTGGTTTTGTTAATCAAATGGCAATATTGCTGACACCTCTTCAAACATGATGCCTATCGTAAATTTACTGATACATTACTATAATTGACTATCATGCTGCTTTTCAGGTACACTGTAGATGGTCTGTGAAGACTACCAGTTCTGACTCATGCAGTCTTAACATTAGTGCTGGTTGGTGCATTTCTTTTATCCCATTACAGTTGTTATAACTTATGCTCCTTATGATGTATTATGATTTTATTATTACTAATGCATGATCGTTTTTGCCATTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTGGTGCATAATGCAGTCGAAGATAAAGAGTGGTGCTGTGGACGAGGTATGCTCTTCTCTATTATTACTGAGTTCCTGCATCAACTATCTGTTGATGAGTTTGTCAATAAGCTCACTGTAGTAAAAATGTGAAATATTAGTATTAAAATAAATGCAGCGAGGTATGTACTATAGAATACTACATCCGTCTAAAAAGACTTCATTTTTAGCTATTAATCTGGACAACTCATTTTTAGCTATGAATAATCTGGACAAGTTGTCTAGATTTATAGCTAGAAATGAAGTCTTTTGGTACGGAGATAGTAGCTCACATAACAGATGGCCAGACAGGCAGACAGTAGTCATGGGCCCAGAAACACCAGTTTAGACATGATCAGATCCATAAATAGGCACCCAAAAAAGTTGATCTAAAATAGATTTTGTGGTCATCTGTTATTAGCTGGCCTGCTACGGATGAATATTTTCACCGGAATTGTAAAAAAAAAATATTTGCACCGGTTTGCATATTGAGAATACAAATGAGCTTCATCTATCCGGTGTTTGAATACAAATCCTCATTAAATCATGGCGATAGCATTTGCTAGTAAACTTATGTAATAGTAGCTTTTTACTGGCTTACCCTTAGCATAGGATGTTGCAGTTACCTAGGTCTTTCAGGCCAAAATGTGAATTATGGATGCCCTGAACAGTGATGTGATTTCTGCATATTTCAAAACAATTCTCTCTTTTAAAATCTTGCAGTACAAGAAGGAAGTCCAGGAGATGTTGGAATTTGCAGAGTCGTATATGCGCAAAGTTAGAACTTCTAACCAAGACAATGGTAGTACACCTACTGAGCAAGACAACGGCGCTGTGACTGAGCAAGAAAATGTGGCGCCGGATAATACACCAAATGATGAATAA</dnaseqindica>

External Link(s)

EnsemblPlants:BGIOSGA029434