Os10g0539600

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Revision as of 08:46, 21 June 2012 by 127.0.0.1 (talk) (Created page with "{{JaponicaGene| GeneName = Os10g0539600| Description = Similar to Calcium-dependent protein kinase 3| Version = NM_001071715.1 GI:115483173 GeneID:4349249| Length = 4750 b...")
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Gene Name

Os10g0539600

Description

Similar to Calcium-dependent protein kinase 3

Version

NM_001071715.1 GI:115483173 GeneID:4349249

Length

4750 bp

Definition

Oryza sativa Japonica Group Os10g0539600, complete gene.

Source

Oryza sativa Japonica Group

 ORGANISM  Oryza sativa Japonica Group
           Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
           Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; BEP
           clade; Ehrhartoideae; Oryzeae; Oryza.
Chromosome

Chromosome 10

Location

Chromosome 10:21482748..21487497

Sequence Coding Region

21483488..21484169,21484503..21484646,21484729..21484881,21485059..21485174,21485811..21485975
,21486277..21486498,21487068..21487190

Expression

GEO Profiles:Os10g0539600

Genome Context

<gbrowseImage1> name=NC_008403:21482748..21487497 source=RiceChromosome10 preset=GeneLocation </gbrowseImage1>

Gene Structure

<gbrowseImage2> name=NC_008403:21482748..21487497 source=RiceChromosome10 preset=GeneLocation </gbrowseImage2>

Coding Sequence

<cdnaseq>atggggaattcttgccaaaatggaacctatgggaacaattaccagaacagcaaccggtttcagaatgaccgttttgcttctcggtacgttgatgggaatgatactgaggattgctactcgggctcgtcaagggccagcttagcgggtgctctgcggcaagggctgaacctaaagtcccctgtccttggatacaagactccaaatgtaagggagctctatactcttggccgggagcttggacagggacagttcgggaaaacatacctctgcactgagattagcacagggtgtcaatatgcatgcaagactatcttaaagagtaatctccgatgtgtgtcagatatcgaggacgtgcgccgtgaaatccagataatgcaccatctttcgggccagaagaatatagtgacaatcaaggacacatatgaggatgagcaggccgtgcacatcgtcatggagctctgtgcaggtggtgagctcttcagcaagattcagaagcgaggtcattacagtgaacggaaggctgcagagcttataaaaattatagttggcatcatagaaacatgccattcacatggagtgatgcaccgggatctcaagccagaaaatttcctcttactggacgcagacgatgaattctcggttaaagcaattgactttggtctatctgtgttcttcagaccaggtcaggttttcagagaggtagtgggaagtccatattatattgctccagaggtattggagaagcgttatggaccagaggctgatatatggactgctggagtgattctctatgtattgctgactggtgttcctccattttgggcagatacacaaagcgggatatatgaaaaagtactggatggacgtattgattttaaatcaaaccggtggcccaggatatctgacagtgcaaaggatcttataaaaaagatgctctgcccttatccatcagagcgtttgaaagcccatgaagtgctaaagcatccatggatatgtgataatggagtggctactaatcgagctctggatccaagtgtacttcctcgtctcaagcaattttctgcaatgaataggttaaagaaattgtctctccagattattgctgagcgtctttcagaagaggagattgttgggttaagagaaatgttcaaggctatggacaccaaaaacagaagtgtggttacatttggtgagcttaagggactgaaaagatacagctcagtgttcaaggatactgaaattaacgacttaatggaagcagctgatgacaccacctccaccatcaactgggaagagtttattgctgcagcagtgtctcttaataaaatagaacgtgagaaacacttgatggcagcctttacatactttgacaaagatggaagtggttttatcacagttgacaagcttcaaaaggcttgcatggaacgtaacatggaagatactttccttgaagagatgattctggaggttgatcaaaacaatgatggtcaaatcgattatgctgaatttgtcacaatgatgcaaagcaacaactttggacttgggtggcaaacggtggaaagcagcctgaatgtagccctgagggaggcaccccaagtatactga</cdnaseq>

Protein Sequence

<aaseq>MGNSCQNGTYGNNYQNSNRFQNDRFASRYVDGNDTEDCYSGSSR ASLAGALRQGLNLKSPVLGYKTPNVRELYTLGRELGQGQFGKTYLCTEISTGCQYACK TILKSNLRCVSDIEDVRREIQIMHHLSGQKNIVTIKDTYEDEQAVHIVMELCAGGELF SKIQKRGHYSERKAAELIKIIVGIIETCHSHGVMHRDLKPENFLLLDADDEFSVKAID FGLSVFFRPGQVFREVVGSPYYIAPEVLEKRYGPEADIWTAGVILYVLLTGVPPFWAD TQSGIYEKVLDGRIDFKSNRWPRISDSAKDLIKKMLCPYPSERLKAHEVLKHPWICDN GVATNRALDPSVLPRLKQFSAMNRLKKLSLQIIAERLSEEEIVGLREMFKAMDTKNRS VVTFGELKGLKRYSSVFKDTEINDLMEAADDTTSTINWEEFIAAAVSLNKIEREKHLM AAFTYFDKDGSGFITVDKLQKACMERNMEDTFLEEMILEVDQNNDGQIDYAEFVTMMQ SNNFGLGWQTVESSLNVALREAPQVY</aaseq>

Gene Sequence

<dnaseqindica>741..1422#1756..1899#1982..2134#2312..2427#3064..3228#3530..3751#4321..4443#tctcctctccatttttttcctcctatcgattttgcaatttagcccctagggaggcagggaatccggctccggtccctgtgccgctccccccggctctccttgcctcccttgctcctccgatcgaggctgaagcggcttcaggtgagccccgtcctggcgattcttgattcgcttggatatacattttgtagcgagttcatcgtctcgatttagatttcgtttgtttttggctggccatggctttggggttgggtggattggaggaggtgaagtgaagtggttcttccaggaggagatttttggtggagattttggtgctgggagcctttgggttggggattgtgagctgtaggaaggtttaaagggagatgcctttggaggaaactgtactgaatttggtgagggtgtaggatgcatagagctatagaaggttggggaatttgctgctcgtaggagcttaggagagctcgaaactttggataatatcacaattgtttaggtgattagttacttgtcgattggttgtgttttgataacatagagtctggttgttggggtgtccagttttaggctaaggtcttgctctactcttactgtattactacaataagtacaagttctgaatgagtactaaattaagctggagttctcctttttagcaggcttttccggatccctgtgaagtgttgtagatatctaacttgcatattgtatcatgcaggatatacatttttgtgggaatggggaattcttgccaaaatggaacctatgggaacaattaccagaacagcaaccggtttcagaatgaccgttttgcttctcggtacgttgatgggaatgatactgaggattgctactcgggctcgtcaagggccagcttagcgggtgctctgcggcaagggctgaacctaaagtcccctgtccttggatacaagactccaaatgtaagggagctctatactcttggccgggagcttggacagggacagttcgggaaaacatacctctgcactgagattagcacagggtgtcaatatgcatgcaagactatcttaaagagtaatctccgatgtgtgtcagatatcgaggacgtgcgccgtgaaatccagataatgcaccatctttcgggccagaagaatatagtgacaatcaaggacacatatgaggatgagcaggccgtgcacatcgtcatggagctctgtgcaggtggtgagctcttcagcaagattcagaagcgaggtcattacagtgaacggaaggctgcagagcttataaaaattatagttggcatcatagaaacatgccattcacatggagtgatgcaccgggatctcaagccagaaaatttcctcttactggacgcagacgatgaattctcggttaaagcaattgactttggtctatctgtgttcttcagaccaggtattatgtcagagtcaataagtatattcaatggggttgtttctatatttagtcatgttagcaatcagctgtttgatatcctgctaacttatttagttatgatgtaaatagttccgtacaaagagcgagtaaggtgaaagtatggcagagtagaaaaacaatcccaatcaaattttctaccagtaatttagtcttggaaacattagtttgttgtagttccttataatgcagctttaacaaaaacaaataataatgtaattgtttactcttgcatacaatctatgcttcctttggctgtttttcctaactgattcatatctatccacaaatcaggtcaggttttcagagaggtagtgggaagtccatattatattgctccagaggtattggagaagcgttatggaccagaggctgatatatggactgctggagtgattctctatgtattgctgactggtgttcctccattttgggcaggtgattgatttgacaagatttgcaaaattctgcttcattggttttagtgaattgctaaaaggacttctttcactcttactagatacacaaagcgggatatatgaaaaagtactggatggacgtattgattttaaatcaaaccggtggcccaggatatctgacagtgcaaaggatcttataaaaaagatgctctgcccttatccatcagagcgtttgaaagcccatgaagtgctaagttagtatatttaatatttcgttcattagtatcacttttattcaatttagtacctcgtagaataattttggaccaatgtttttgttatccacgaaatttcataagttccgaaactatagtaagatctcaagagtaaacaaagagcagtttcttacagtttttctattatatgttcagagcatccatggatatgtgataatggagtggctactaatcgagctctggatccaagtgtacttcctcgtctcaagcaattttctgcaatgaataggttaaagaaattgtctctccaggtatatttttttttaccgtttcatcttgtcatagaaaagtcatttatttgtttccattttgtcatcatggtgaagcatcattaaatgctttcacaatttccagggaaatcattattctattactgctgtcctttaatactaaatctaacagaagtgtgaacctttttaaattccagaagcatagctacttctacaagaataaaaacaaagctaccttgtgtacatcatgccatcatggccaaattgatttgctgcagttcagatttttcctcgtaggatcttaaaaatttgacagcactgaaattgtttttaaatctgactcagtaatattttcttcattggtgaattgtttattgttatcatatacgaagatcttttgtcggtattgtacctgttccagcattgcttccaagttgagagttacagacttttatggtgcacctaaatttactattctaaattgacccagatataatttcataaattgctatgatacaaaagtaggagatgctaggaatcaggatgagattaattaaggcatcaatttttacttaaactattatgtctatctatttctcatatttaaaaatattacagattgcagtaatctatgtttcttacttgctgttcatccagattattgctgagcgtctttcagaagaggagattgttgggttaagagaaatgttcaaggctatggacaccaaaaacagaagtgtggttacatttggtgagcttaagggactgaaaagatacagctcagtgttcaaggatactgaaattaacgacttaatggaagcagtaagtggtcactgttattgcaaaatacgatgcaaaatgtactgtagcacacttaaaccatatacatggtatctgtagtatatagactggatattgtttgtcaaccttttgatcatgctgcttttcagaattctgtattgttttgaatgtgtgtgaaaagtcggggccaacacattcatgtcaaaagattacttaaaccattggtttagttgaaatggagtatgtcatgcatctgtgatgaaatactgtcttcattgcagaactgttttatatattttaacctttttgagtactacttcaggctgatgacaccacctccaccatcaactgggaagagtttattgctgcagcagtgtctcttaataaaatagaacgtgagaaacacttgatggcagcctttacatactttgacaaagatggaagtggttttatcacagttgacaagcttcaaaaggcttgcatggaacgtaacatggaagatactttccttgaagagatgattctggaggttgatcaaaacaatgtaagttctgtactgtttttcaagctataagatcagtgtgctagtattagttattgctgttcagtagctaattgttctactcgtgaagaatttgatggcactggttatagaatagcagcatgtatgtggtagaagttggtcctaaatgatgtttcactttcagtattaccttcagcaatagatatgaaccaatttggatcctctgcagtggaagacctggatccgatatgaacaactataatgatgttatttacaggctgtttaaaaatgtatagtttagaggtttcatacttttgcgctttcacccccaacttattgtcctctttgtttgaggataaactgaacagctgagggaagacttcccatatgttcaaaagggcctcaattatttggcatatactgttgaattatcataagatgaatacttatatttgcttagtaacataggaaagcaagttatgtttttctcagaacagaaaaggtgtcattgagattatttttgcttccttgctgaacatctcatcagtaattatgtttttcttgttcttttttttttggtaaattttcaggatggtcaaatcgattatgctgaatttgtcacaatgatgcaaagcaacaactttggacttgggtggcaaacggtggaaagcagcctgaatgtagccctgagggaggcaccccaagtatactgaactcctgtcgcctggcacccccaagaattcagtttgttctcctgagcctttcatctgtttatcacaacacatagttgtggatttgagagaagagagccaagactagatggtttatcagtaatcaccctatagcagtggtggaagaagactctcttagtacctaatagcatataaatgtgtggtctaaagacatcgtatatgtatgaacctcataagttcgttcgttcgttcgtttggttggttggtttgctaccctgctatctaataataatatcaataatacccgaagaacccctcttggttctgc</dnaseqindica>

External Link(s)

NCBI Gene:Os10g0539600, RefSeq:Os10g0539600