Os10g0540900

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Revision as of 08:46, 21 June 2012 by 127.0.0.1 (talk) (Created page with "{{JaponicaGene| GeneName = Os10g0540900| Description = Conserved hypothetical protein| Version = NM_001071723.1 GI:115483189 GeneID:4349257| Length = 3813 bp| Definition ...")
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Gene Name

Os10g0540900

Description

Conserved hypothetical protein

Version

NM_001071723.1 GI:115483189 GeneID:4349257

Length

3813 bp

Definition

Oryza sativa Japonica Group Os10g0540900, complete gene.

Source

Oryza sativa Japonica Group

 ORGANISM  Oryza sativa Japonica Group
           Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
           Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; BEP
           clade; Ehrhartoideae; Oryzeae; Oryza.
Chromosome

Chromosome 10

Location

Chromosome 10:21560392..21564204

Sequence Coding Region

21560677..21560765,21562604..21562841,21562946..21563207,21563305..21563507,21563602..21563830
,21563928..21564034

Expression

GEO Profiles:Os10g0540900

Genome Context

<gbrowseImage1> name=NC_008403:21560392..21564204 source=RiceChromosome10 preset=GeneLocation </gbrowseImage1>

Gene Structure

<gbrowseImage2> name=NC_008403:21560392..21564204 source=RiceChromosome10 preset=GeneLocation </gbrowseImage2>

Coding Sequence

<cdnaseq>atggcggaagatgccaatgccggtcgcaagagctctactcatttagcccaatctcctgaattgcacgcatctcttgaatcgcacgagctgtacaacatacctattacgaggggtgaaggaacattaataactgaactgcgtaaggttatggaggaactacgtgtgtcttattatgctgacacagatgaagaaactcgggagcaactgaaacagttttgggatgatgaattcaatgcaatatcatctggagaaacaactattgagagagatctaaagtggatgcggaaggaggttattgaggcattcgagacatacagtgaggctaatgtagttgattatgagcttgaagatctttctcgtcagtgcttgatttttgatgattgtggtcagccataccatcattataattttacaatgaagtctaagcgtcctgattctgatttggagtctagtactaattgtcctgattctgatttggagtctagtactaatttggagagttgcatttctcgtcactattttgctgaagttaaacttatggatggaaagaaacattatttttgttgtccattggagtcgtttgacaatggtcattgtcatggatgccggaattctggcattgatctgaagcatccttcaaacggtggttatgaggagggcaacgcatactctggactctcttttgatgatgatgaattcgatgcaatctctgaagaaacaactaaggagaaaggtatagagtggatgcgggaggaggttattgaggcattcgagacatacagtaatgctaatgtagttgattatgagcttgaagatctttctcgtcagtgcttgatttttgatgattgtggtcagccataccatcattataatttcacaatgaagtctaagtgtcctaattctgatttggagtctagtactaatgtggagagttgcatttctcgtcactattttgctgaagttaaacttatggacggagagaaacattatttttgttgtccattggagtcgtttgacaatggtcattgtcatggatgccggaattctggcattgatctgaagcatccttcaaacggtggttatgaggagggcaacgcagactctggattctcttttgatccaatctaa</cdnaseq>

Protein Sequence

<aaseq>MAEDANAGRKSSTHLAQSPELHASLESHELYNIPITRGEGTLIT ELRKVMEELRVSYYADTDEETREQLKQFWDDEFNAISSGETTIERDLKWMRKEVIEAF ETYSEANVVDYELEDLSRQCLIFDDCGQPYHHYNFTMKSKRPDSDLESSTNCPDSDLE SSTNLESCISRHYFAEVKLMDGKKHYFCCPLESFDNGHCHGCRNSGIDLKHPSNGGYE EGNAYSGLSFDDDEFDAISEETTKEKGIEWMREEVIEAFETYSNANVVDYELEDLSRQ CLIFDDCGQPYHHYNFTMKSKCPNSDLESSTNVESCISRHYFAEVKLMDGEKHYFCCP LESFDNGHCHGCRNSGIDLKHPSNGGYEEGNADSGFSFDPI</aaseq>

Gene Sequence

<dnaseqindica>286..374#2213..2450#2555..2816#2914..3116#3211..3439#3537..3643#attcggaacagggaagccgccgcatccccaaattcgccggcttcctccctcccgagctaggtttccgtctcgccgccgccgccgccgccgcccgcctccttttactttttccgcaccccaattcgctccgctgcccacctcctttcctttttccgctgccagccgactagggtttccgcctcctcgccggacggacgccgcgaaccccccccacacggccacacctcgcgccggctccctcctcgcgttccgcttccctcgcattacaagcggcgccggtcccggatggcggaagatgccaatgccggtcgcaagagctctactcatttagcccaatctcctgaattgcacgcatctcttgaatcgcacgagctgtaatattcctttttttttaatctctttctttttttttctctatatgtgttttttctcacattattatagtgttcaaatttaagactctctagcattgccaatattcatataaatgttaatatatgtctagattcattaacatctatatgaatatggctatgctagaaagtttataatatgaaacggatgaagtatatttttttcttacagttttgcttttgcttcaagctgtagtaactaacacactttctttttcttcgtattctgaagataaattgcatgtatgcttattatcattctctttgtatatttgtcttagaagctgaactgaattattacttgtgtgttgaaatgttccttgtccccattattttccaatcactttatccaatgttatgcttgtcagcagcgacagagagattcccaaagacgcttctgttcatcaacaggcaattgatgaaccccaaccattgtaagcctcgtgaaggggggcccctaatgggcgatcgatcgctagggctatagcccagcgatcagatccgccccgcctcccctcctccctcttctcccccttcctcctccccttctcttcccactacagtacaccacacaaaatttttttaaaaaacaaaaagttagaaaaatttatgtatagaaatattatatataaaaaatttgaattcaaattcaaatttgaatcggctatgtaaacttttggcttataaactttgggtctataaactttaggtgtataaactttagatgtatagaaatactatatatagaaaatatttcaattcaaattcaaatttgaatcagatataattgaaattcaaatttgaaacgggtatataaactttagatctataaactttagatgtatagaaatactatatatagaaaatatttcaattcaaattcaaatttgaatcagatataattcaaattcaaatttgaaacgggtatataaactttaggtgtataaactttagatgtatagaaatactatatataaaaaatatttgaattcaaattcaaatttgaatcggatatataaacttttgacttataaaatttaggtcaccaaactttatatgtgtaaatttgaggtgtataaactttaggtgtataaattaactaaaataggaaagtaatgcggtgccgaaaaaggaaagtggaggaagggggaaccgcgctaggggcgatcgctggtagcgatcgatcgccccttagcctttccgctcgtgaagatctcttaatccatttcataactatttatctctttgtattgatccagatacctcttaccataaatttaatgttttaattttcaatttaatgttttagttgtactatacaactgattatggtgatgtgaattataaatgtcgtaattttttatcgattttataggaattgactttgaaactctgtatactcttatcaaccttctgatggttagtgtagttgtcttttatctcttatgaatatgtcaaaacttatcttgtatgactagaattttctaacttacctttcaactttaatttgacgaactacatagagtggtggtgatttcatcaatatctgagtggtcaaaatacttgtttattatgtttgctacatgcttatatatttataaactttacgaataatacttcttaaacattggtgcttaattacaagcatatatatgcgttctagttctaaattttataagtgaaatttatttatttaatgtctatacatctgcacattgttaataaaacatttatgtattgtttaaacttcacaaatattattatattgattataataatatgtaataccatggccacaggtacaacatacctattacgaggggtgaaggaacattaataactgaactgcgtaaggttatggaggaactacgtgtgtcttattatgctgacacagatgaagaaactcgggagcaactgaaacagttttgggatgatgaattcaatgcaatatcatctggagaaacaactattgagagagatctaaagtggatgcggaaggaggttattgaggcattcgagacatacagtgaggctaatgtctgtattcatatatatatattctatatagaaattaatgattctatttttaaacttttactttagaatgtttgtttaactttttactttcgaatgtttatcaggtagttgattatgagcttgaagatctttctcgtcagtgcttgatttttgatgattgtggtcagccataccatcattataattttacaatgaagtctaagcgtcctgattctgatttggagtctagtactaattgtcctgattctgatttggagtctagtactaatttggagagttgcatttctcgtcactattttgctgaagttaaacttatggatggaaagaaacattatttttgttgtccattggagtcgtttgacaatggtacatacaacacttgtatttattgtatatcttatatttatgtcactcaaattttatacatttggaacctttagctaattaattaaatttttattaggtcattgtcatggatgccggaattctggcattgatctgaagcatccttcaaacggtggttatgaggagggcaacgcatactctggactctcttttgatgatgatgaattcgatgcaatctctgaagaaacaactaaggagaaaggtatagagtggatgcgggaggaggttattgaggcattcgagacatacagtaatgctaatgtcagtattcatttatatattatatagaaattaatgcttctattattaaactttagaatgtttgtttaactttttactttcgaatgtgtatcaggtagttgattatgagcttgaagatctttctcgtcagtgcttgatttttgatgattgtggtcagccataccatcattataatttcacaatgaagtctaagtgtcctaattctgatttggagtctagtactaatgtggagagttgcatttctcgtcactattttgctgaagttaaacttatggacggagagaaacattatttttgttgtccattggagtcgtttgacaatggtatatacaacacttatatttattgtatatcttatatttatgtcactcaaattttatacatttggaacctttagctaattaattaaatttttattaggtcattgtcatggatgccggaattctggcattgatctgaagcatccttcaaacggtggttatgaggagggcaacgcagactctggattctcttttgatccaatctaattagatctatagactatagagttgatcatactggatgggtagcgttgctgtgggataattgtctaataaaacagtaaatatgagttgtaaaaaaaatcttacttattgtacgattttattttgtgtggttatatattttttaccttgatcaattattcatattcaaagat</dnaseqindica>

External Link(s)

NCBI Gene:Os10g0540900, RefSeq:Os10g0540900