BGIOSGA030600

From RiceWiki
Revision as of 09:44, 25 June 2012 by 127.0.0.1 (talk) (Created page with "{{IndicaGene| GeneName = BGIOSGA030600| Description = Putative uncharacterized protein| Definition = Oryza sativa Indica Group BGIOSGA030600, complete gene.| tag = OsI_310...")
(diff) ← Older revision | Latest revision (diff) | Newer revision → (diff)
Jump to: navigation, search
Gene Name

BGIOSGA030600

Description

Putative uncharacterized protein

Definition

Oryza sativa Indica Group BGIOSGA030600, complete gene.

LocusTag

OsI_31061

Ensembl Transcript ID

BGIOSGA030600-TA

Ensembl Protein ID

BGIOSGA030600-PA

Length

5126

Source

Oryza sativa Indica Group

 ORGANISM  Oryza sativa Indica Group
           Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
           Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; BEP
           clade; Ehrhartoideae; Oryzeae; Oryza.
Chromosome

Chromosome 9

Location

Chromosome 9:10299612..10304737

Sequence Coding Region

10299612..10300047,10300148..10300245,10300431..10300566,10300727..10300866,10300952..10301102
,10301204..10301301,10301491..10301626,10301753..10301881,10301971..10302069
,10302133..10302258,10302342..10302449,10302550..10302645,10303638..10303977
,10304101..10304222,10304342..10304409,10304624..10304737

Genome Context

<gbrowseImage1> name=IndicaChromosome09:10299612..10304737 source=RiceIndica09 preset=GeneLocation </gbrowseImage1>

Gene Structure

<gbrowseImage2> name=IndicaChromosome09:10299612..10304737 source=RiceIndica09 preset=GeneLocation </gbrowseImage2>

Coding Sequence

<cdnaseq>ATGGCGGCGGAGGCGGAGGCGGAGCCGCGGCGGTGGGCGGCGACGTACACGAAGCACGTGAAGCAGAAGCGCAAGGCGTACCAGGACGGCGCCATCGTCCTCCACCGCGCCTCCGGCAACCTCGTCCTCATCGACGACGCGGGCGGCACCGTCGAGTGCAGGACGCTCCGCGCCGGCGAGGAGGTGTTCCCCGGCGCCTCGCTCGCGTTCCAGCGCCACCTCGTCGACGTCGGCGAGCCCGAGCCCCACCCCGGGTCGGGGTCCTCCTCCGCCGCCGCATCCCCCGCTTCCCGAGGCGTCCACCGCGGCGGCGCAAGCGCCAGGGCGCGTCCCAGCGCGGTGAACTCGCGGCCTCCCCGTGCGTTCGCGGACCCTAACACGAAGGGGGGTGGCGGTGGCGGTGGCAAGGATGAAGCCGTGGGTTCGAGTTTCCAAGAGTGGACCGCACTGTACACCACCCAGCTGACTCAGAAGGCGAAGAAGTTCCATGACGGTGTCGTCAGGCTCGCGCAGGTCAGTTCGCACGTGAAGCAGATAATTTTGCTGGATGAAGAGGGCGGAGTGCTAGCCACCAGGTACCTCAAGTCAGGGGAATCTTTGGAAACTGGGAAGAAATGTCATTTCCCTAACTATCTTATTGAGATTTGTGAGGCGAAGAGTGTAAACAAAGGTTTACAAACTAATTCCTCGGAGGAACCTATGGTGCAAACAAGACCAAGGAGTGGGGAGAATACAAGTAACAAAACAGGATCAGGTCCAACGAGTAAACCACTCAAATTTACCAGTCCACAGAAATTTCATGGTACATGGTGCGAAATGTTTGTCTCTACAAGTATAGATCTTGAGGACAGTAAATCATCAAATACTGCTGGTTCAAGTAAGCCAGAAACTTCAAAGATTGGAGTTGTGGATGCTGGTAGCTCAGGAAGCATTATGGGTTCAACAGACTCTGAATTTAAAGAATGGAGTGCCTTATATACCACCCAACTAACACAGAAGGCAAAGAAGTACCATGATGGTGTGATAAAGCTTGTGCAAGTTGGTTCGCATGCAAAGCAGATTGTTCTGCTGGATGAAGATGGTGGAGTGCTTGGCAGCAGATATCTCAAGTCAGGTGAATCTGTTGAAAGCGGGATGAAATACCAGTTGCCTAATTATCTTATCGAAGTTTGTGAGATAAGAAAACAAAAGAATGATGTAGAGTCTAAACACCCTTCAGAGGTGGTTTTGAGTCAAACTGGATCAGCGAATGGACATAATACAACTGACAGGACAGATGGGAGAAACAAATCTCCAAAATTTGTCAGTCCACTGAAGTTCAATCATTTTCAAGAGAGTAGATTACAAGGTAGTAATGGTTTCAACAGGCCAACGGTTGCCAAATCAATACATACTAACATGATTGATACACTAAAATTTCATGGTAGTAAGGCTGCTGTTTGCCTGTTTGCAGATACTCAGAAGGCTAAACCAGATTTTACTGTTGGCTACAAGACAGACCTTGGCAAATCAACATTTAGTAACTTGGATGATCCACATCAATTTAATGTTTTTGCAGATAATAAGCAAGATAAAACAGAATATGCTGCAAGCTATAATCCACAAGAAGTTGGCAAATCAAGTTATGATAGAGTGGACAGTCCTCTAGGATTCTGTGATCTTCAGGATGGTAAATCAGGATCTTCCACTAGTTTTTTGAGGAGAGAGGCTGGCAGAACAACTTTTGGTAACACGGATGATTCTTTGAGAACTGCATCCCAAATACTGTCTATCATGAGGCCCCCATCGGAAATGAAATACTCCCAAAGTGTTCCAGCTTCACAAGTACACTCCTCAGCATCCTTTGGATCAAATATAGCTCGTGATGCGGATCATAGCAAGACAGCTTCTAACATTTCAGTGATCAACAGTTCAAACAGAACTATTGGTGTTAATATGAACTCTCGAATGTCTCATTGTGCTACACAACTTCGTGCATCAGTGCTGGCTTGTTTAAATTTAGAAACTCTGCAGCCAAGGAACTCAATATGTACTACTCTTCAGAGTGAGTTATCAGGGAGTGCCCATCCAACTTATGATCATCAGACAGTCATGAGACCAACAACTTTTGATAGTCTGGAATTGGACATGGTGGATACCCCAACATCTGATGTATCCAATGCAAAAGAGCAGAGTCAAGGTTCAACAAGGAACCATCAAACTGAAAGTTCTAAAGATTCTGCACCAGCTATGTGTACTACTAGCTCAGACCCTCCATCGGGTAAAGGTGAAACTGCAGACCAGCTCAGTTCAGATTACAGAGTGGTGGAAGAAAAATGTGGCAGTTACCCCTTTTTATCTGCAGGCGACCTGACGTTAACAGATGATGATTGCCCTTCGTTTGATCTTGGCTTCTAG</cdnaseq>

Protein Sequence

<aaseq>MAAEAEAEPRRWAATYTKHVKQKRKAYQDGAIVLHRASGNLVLIDDAGGTVECRTLRAGEEVFPGASLAFQRHLVDVGEPEPHPGSGSSSAAASPASRGVHRGGASARARPSAVNSRPPRAFADPNTKGGGGGGGKDEAVGSSFQEWTALYTTQLTQKAKKFHDGVVRLAQVSSHVKQIILLDEEGGVLATRYLKSGESLETGKKCHFPNYLIEICEAKSVNKGLQTNSSEEPMVQTRPRSGENTSNKTGSGPTSKPLKFTSPQKFHGTWCEMFVSTSIDLEDSKSSNTAGSSKPETSKIGVVDAGSSGSIMGSTDSEFKEWSALYTTQLTQKAKKYHDGVIKLVQVGSHAKQIVLLDEDGGVLGSRYLKSGESVESGMKYQLPNYLIEVCEIRKQKNDVESKHPSEVVLSQTGSANGHNTTDRTDGRNKSPKFVSPLKFNHFQESRLQGSNGFNRPTVAKSIHTNMIDTLKFHGSKAAVCLFADTQKAKPDFTVGYKTDLGKSTFSNLDDPHQFNVFADNKQDKTEYAASYNPQEVGKSSYDRVDSPLGFCDLQDGKSGSSTSFLRREAGRTTFGNTDDSLRTASQILSIMRPPSEMKYSQSVPASQVHSSASFGSNIARDADHSKTASNISVINSSNRTIGVNMNSRMSHCATQLRASVLACLNLETLQPRNSICTTLQSELSGSAHPTYDHQTVMRPTTFDSLELDMVDTPTSDVSNAKEQSQGSTRNHQTESSKDSAPAMCTTSSDPPSGKGETADQLSSDYRVVEEKCGSYPFLSAGDLTLTDDDCPSFDLGF</aaseq>

Gene Sequence

<dnaseqindica>1..436#537..634#820..955#1116..1255#1341..1491#1593..1690#1880..2015#2142..2270#2360..2458#2522..2647#2731..2838#2939..3034#4027..4366#4490..4611#4731..4798#5013..5126#ATGGCGGCGGAGGCGGAGGCGGAGCCGCGGCGGTGGGCGGCGACGTACACGAAGCACGTGAAGCAGAAGCGCAAGGCGTACCAGGACGGCGCCATCGTCCTCCACCGCGCCTCCGGCAACCTCGTCCTCATCGACGACGCGGGCGGCACCGTCGAGTGCAGGACGCTCCGCGCCGGCGAGGAGGTGTTCCCCGGCGCCTCGCTCGCGTTCCAGCGCCACCTCGTCGACGTCGGCGAGCCCGAGCCCCACCCCGGGTCGGGGTCCTCCTCCGCCGCCGCATCCCCCGCTTCCCGAGGCGTCCACCGCGGCGGCGCAAGCGCCAGGGCGCGTCCCAGCGCGGTGAACTCGCGGCCTCCCCGTGCGTTCGCGGACCCTAACACGAAGGGGGGTGGCGGTGGCGGTGGCAAGGATGAAGCCGTGGGTTCGAGTTTCCAAGGTTTGCGAGCCGCCTGCTCTGCGTATGCTCACAAGGTGTTTGATCGCTGAACAGAATGGGCGTAATCTGATGAATGAATCGGGTGTGCTTTTGATTGCAGAGTGGACCGCACTGTACACCACCCAGCTGACTCAGAAGGCGAAGAAGTTCCATGACGGTGTCGTCAGGCTCGCGCAGGTCAGTTCGCACGTGAAGCAGGTAAGCAGAATGCGCATTTCGTAGTTGGTAATTTGGTATACGGCATATTCTGATTGTTGGGTAGCTAATGGATGATAGATTGGTGGTAGGTTACTTGATCCTCATGAGACCAGTTTATCTTAGAATGCTGTGGTAGTGGACTGGGGAAAAATGATGTGATATGTTGTTTTGGATTACTCGTCCAGATAATTTTGCTGGATGAAGAGGGCGGAGTGCTAGCCACCAGGTACCTCAAGTCAGGGGAATCTTTGGAAACTGGGAAGAAATGTCATTTCCCTAACTATCTTATTGAGATTTGTGAGGCGAAGAGTGTAAACAAAGGTTGGTTTTGTGCATTTTCCAATATATTGACGATTTCTGTATCTAATCTTTGGACCTGTGCGTTGTGAGACGTCAACATTTTTGCTGTGCCTAATTGGAGTTCCTTTTTTCCTTTGCCCACATATTGAAAGGTTGTTATTTCTGCATTGCCAATACGCAGGTTTACAAACTAATTCCTCGGAGGAACCTATGGTGCAAACAAGACCAAGGAGTGGGGAGAATACAAGTAACAAAACAGGATCAGGTCCAACGAGTAAACCACTCAAATTTACCAGTCCACAGAAATTTCATGGTACATGGGTATAATGTTTTTTTTTAAGATTGATTTAATGAATTAATGTTAAACATCAGTTAGCTATGATTGTCCTTGTCCAACATATCACAGTGCGAAATGTTTGTCTCTACAAGTATAGATCTTGAGGACAGTAAATCATCAAATACTGCTGGTTCAAGTAAGCCAGAAACTTCAAAGATTGGAGTTGTGGATGCTGGTAGCTCAGGAAGCATTATGGGTTCAACAGACTCTGAATTTAAAGGTTCATGTGTTCTCTCTGTATATGTCAGATATTTGCGATATGTACAAATTGTAAATTATTGATATATTTCAAAGCTAATAGTGAATGTACATTCTTTGTAGAATGGAGTGCCTTATATACCACCCAACTAACACAGAAGGCAAAGAAGTACCATGATGGTGTGATAAAGCTTGTGCAAGTTGGTTCGCATGCAAAGCAGGTTAGCAATTAGCATTCAATCCGTTAGTTTCATGCTTATTAATATCAACACTGAGAAGTTTCTAGTGCAAGGTTTGGCAATATATGATTGCTGTTTTCGATGTCACTGCTAGATGCTATGTAATGAAATGCTGTGATATTTTGCTAGTTGTAGAATGGTGTTATAGTTTTTTAATAATTGGATCTTCAGATTGTTCTGCTGGATGAAGATGGTGGAGTGCTTGGCAGCAGATATCTCAAGTCAGGTGAATCTGTTGAAAGCGGGATGAAATACCAGTTGCCTAATTATCTTATCGAAGTTTGTGAGATAAGAAAACAAAAGAATGGTTAGTTTTCATTTGTGTCCACTCTGTAGCTTACGATACTCTGAAAATATTCAAATGTAGTTTTTAAACATATATTCCTTTTTTTTCTATATCACATCTTATTTTACTGCATTAATTGGTGTGCAGATGTAGAGTCTAAACACCCTTCAGAGGTGGTTTTGAGTCAAACTGGATCAGCGAATGGACATAATACAACTGACAGGACAGATGGGAGAAACAAATCTCCAAAATTTGTCAGTCCACTGAAGTTCAATCGTATGTGATCACAGAGTTCCACACATTAGTACTTTACTTCTTATGACATACTTTAATGTAATAATTCATTTATCTCTACAAATTTTCAGATTTTCAAGAGAGTAGATTACAAGGTAGTAATGGTTTCAACAGGCCAACGGTTGCCAAATCAATACATACTAACATGATTGATACACTAAAATTTCATGGTAATTGAACATGATATCATAAACACTTAGTTCTATGTCCTACTACTCCCTATGTATCTTTAGGTAGTAAGGCTGCTGTTTGCCTGTTTGCAGATACTCAGAAGGCTAAACCAGATTTTACTGTTGGCTACAAGACAGACCTTGGCAAATCAACATTTAGTAACTTGGATGATCCACATCAATTTAATGGTAATTGGGTTTAACTTTATGCACAATATCTGTCTTCCAGTAGTTATATTTTTATATAGTTAAAGTGCTGGTTCTTTCCCCAGTTTTTGCAGATAATAAGCAAGATAAAACAGAATATGCTGCAAGCTATAATCCACAAGAAGTTGGCAAATCAAGTTATGATAGAGTGGACAGTCCTCTAGGATTCTGTGGTAAACAGACTTGATGTAGCATACTTACACCTATTTTTTACCCTCCTGCTGTTGACATACTCTAATCCAGAAATGCCCATGTTTTATTTATTTTCTGCAGATCTTCAGGATGGTAAATCAGGATCTTCCACTAGTTTTTTGAGGAGAGAGGCTGGCAGAACAACTTTTGGTAACACGGATGATTCTTTGAGAACTGGTATGTATACTTTACCTACTTTCTAGTTTGAATAGGTTTGACCACGCAACAGAAAAATTATGTTGCATGTTTCCTTCATGTATGTCAACTACACGAACAGTAGATAAGTAATCTATGCACCCACCTGGCTACTATTATCCCTATACCCAAGCACCGAAAGTAAGACAATCCAATCAGCCATTGTTTTAACAAATTTGTAATGCTTTTATTTATTGTATTAAATAGATAATTGGTTTGATATATGTGCACTTCAGAAAATAAAATACAAGACAAGTCTGCTCAAGTGAAACTTTTACTGGCACATTCTATCAGTGTTCTCTCTTCTGTTGTGCAATGCTAAGGTTGTTGTGACCAATATTGGCTTTGTTCATTAAGACTAGTTTCAGTTAAGGTTGATTATTTCAGAAACTCCATGATATGGATTTCAAAATAGCTTTCTGGTAGGTGCCTTTTAGCAGCGTACTTTCAGGACATTCTTTATGGTCAGATTAGATATGTCTCTGTTGCATGCATCTTGCAGTAATTATTTCATAGTTGTATTACTGATAAGGAAAATGGTCGTCCCTTATTCCTGCGAATGTGTAGCTTAATTATTCAGGTTTATTTACTGGTAAGTAGCTATTTAAATATGTGATTTTACATATTACAAGGGATATTTGAGGTATTCTTTATGACTTCATCAAATTTAAATAAAAGCTGAAACAGTTCTGTATGCTTCTATAGTGGTCGTTCTGCTTTACCCTTTCTTGTTTATCATCAAATATTTCTCTTTGGCAATCTGAAGAGCATAAAATAAAAATAAAATGCAAAGAGTTCCTGCATTGTGCTCATACAATAACAATTCACGCAGTAGAGTACTTTCAAGAAATTCATTCATTGTTACAAGTGTATGTTAGTGATCCTTTGTGGATTGCATGGCTAACTTGAATGACTTACGCTACTTACTTATTGATCATGTGCTTCATATTAATAACACTGCTATGCTTTTTTAGCATCCCAAATACTGTCTATCATGAGGCCCCCATCGGAAATGAAATACTCCCAAAGTGTTCCAGCTTCACAAGTACACTCCTCAGCATCCTTTGGATCAAATATAGCTCGTGATGCGGATCATAGCAAGACAGCTTCTAACATTTCAGTGATCAACAGTTCAAACAGAACTATTGGTGTTAATATGAACTCTCGAATGTCTCATTGTGCTACACAACTTCGTGCATCAGTGCTGGCTTGTTTAAATTTAGAAACTCTGCAGCCAAGGAACTCAATATGTACTACTCTTCAGAGTGAGTTATCAGGGAGTGCCCATCCAACTTATGATCATCAGACAGTCATGTAAGATTTTGTGTGCATATCTTCAGTTATATCCTAGAAGATTGCCTTCTGGACAATAAAGTAGTAATATCTAGCATGACAAGTTGAATAAGAAAATGGGTTTACTCGAATTATGCTTTATAGGAGACCAACAACTTTTGATAGTCTGGAATTGGACATGGTGGATACCCCAACATCTGATGTATCCAATGCAAAAGAGCAGAGTCAAGGTTCAACAAGGAACCATCAAACTGAAAGTTCTAAAGGTACTGGAAGCTGTTTCAATTAATTTCCTTTTTGTGGAGTTAGAGCAAAATTGTGCTTTACTTTTAGGGTTTTTTGCCATCCAAGAGTAAACGTACATATATTGGTCTATACATGGCAGATTCTGCACCAGCTATGTGTACTACTAGCTCAGACCCTCCATCGGGTAAAGGTGAAACTGCAGACCAGGTTTGCATCCTATATAACCTTTCTTGGAAAAAGACTGCCGTTTGTGAATTTAAGGTAGTTTCAGATTTATGAGAGCAATCAAATTACTTGGTTTTTATAACTGTCCACAGCTGCATATTGTTTTGCATCATAAGATCATGCTGTGAGTACTAGCACCTACTGTTTGATTATACTATGCTAATCAATGACTAGTTGACTACATATGCATTTGCAGCTCAGTTCAGATTACAGAGTGGTGGAAGAAAAATGTGGCAGTTACCCCTTTTTATCTGCAGGCGACCTGACGTTAACAGATGATGATTGCCCTTCGTTTGATCTTGGCTTCTAG</dnaseqindica>

External Link(s)

EnsemblPlants:BGIOSGA030600