Os09g0298500

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Revision as of 07:20, 21 June 2012 by 127.0.0.1 (talk) (Created page with "{{JaponicaGene| GeneName = Os09g0298500| Description = Zinc finger, RING-type domain containing protein| Version = NM_001069345.1 GI:115478429 GeneID:4346658| Length = 495...")
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Gene Name

Os09g0298500

Description

Zinc finger, RING-type domain containing protein

Version

NM_001069345.1 GI:115478429 GeneID:4346658

Length

4957 bp

Definition

Oryza sativa Japonica Group Os09g0298500, complete gene.

Source

Oryza sativa Japonica Group

 ORGANISM  Oryza sativa Japonica Group
           Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
           Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; BEP
           clade; Ehrhartoideae; Oryzeae; Oryza.
Chromosome

Chromosome 9

Location

Chromosome 9:7842967..7847923

Sequence Coding Region

7843293..7844651,7845871..7845963,7847701..7847847

Expression

GEO Profiles:Os09g0298500

Genome Context

<gbrowseImage1> name=NC_008402:7842967..7847923 source=RiceChromosome09 preset=GeneLocation </gbrowseImage1>

Gene Structure

<gbrowseImage2> name=NC_008402:7842967..7847923 source=RiceChromosome09 preset=GeneLocation </gbrowseImage2>

Coding Sequence

<cdnaseq>atggcggggagatgcgccggcggcggcgacggcggcggcgagggcatgctggcgcggctgcggagggcggcagccaggcggatcgggctctcctgcgcctccttcttctcccacgccgccacctccccttccccgcctcccaagaccatctcatgctcagcactgaatgcgcctgcagacagcactgatgaagaccaggaaaagctggaggagcccactagcacaagaatggctgacaagaatctctgtgcaatatgtctggagcccctcagcaccggcagcgttgatattgacaatggtgacaggccagcaatcttcacatcacaatgctcccactccttccacttcctatgcatcgcctccaacattcggcacggcaatgttacatgtcccatctgccgtgcacagtggtctcagctgccgcgtgacttgaaggtgccaccattgctgcagaacaaccagtctgacccaatcctccgcatccttgatgacaacatcgcgacatctcgtttcaacagaaggtcatccatccgtgctgcccggtacaacgacgatgatccggttgagccttacaccttgaccgagcatgtggatccatgccttcgcttcgctctgatcccatccccagtggcggctcaccatcatgctctcggacattacccttgtggccgtgtgatgccactgcagcagcattgccagtacagcagctcctccatgctctcaccgccacagattgcttcaccaagtgggcagaggcgcgcttacctctccgtcagtctcgcgccacagccagccatggacctagttctggttgccagccctaatgggccacatctcaggctcctgaagcaggcaatggcgctggctgtcttctccatgcgcgcaattgaccggttagccattgtcacaaatgccaccactgcaacccgcgccttccccttgcgccgaatgtcatcccatggaaagcgaatggcattgcaggtcattgaacacctctgctgtgttggtggtactgatcctgtaggggcattgcagaagggcctgaagatactagaggaccgggcgcaccagaacccaagcagttgcattcttcacctgtcagaccatccaatccgaagctgtttcggggtcgacatgaaccgtttcaacatcccggttcaccagttccatgtcggcctcggtttcggggtgcagaatggctttgtgatgcacgagtttgaggagctcttagcgcggttgcttggcggtgtcataagcgacacccagctcaggattggcgagcacggtggagtggtgaggctaggtgagctgaggggtggcgaagagaggaggatcccgcttgacctggtgtcggactgcggcttcatacttgttggctatagctatctggaaggtggaagggaggatcagttcaggacaggcgaagtcgctgtcggtttcgaagagaaaggcgataaccggtactgcggggtcagggatgccggtggtctgagtatcggcggtgagaggaggagcagctgctgcgccgagagatgggactaccttgatccgttcatggcgcggcgatgggcgaagcatttcaatgtgtatagggcctga</cdnaseq>

Protein Sequence

<aaseq>MAGRCAGGGDGGGEGMLARLRRAAARRIGLSCASFFSHAATSPS PPPKTISCSALNAPADSTDEDQEKLEEPTSTRMADKNLCAICLEPLSTGSVDIDNGDR PAIFTSQCSHSFHFLCIASNIRHGNVTCPICRAQWSQLPRDLKVPPLLQNNQSDPILR ILDDNIATSRFNRRSSIRAARYNDDDPVEPYTLTEHVDPCLRFALIPSPVAAHHHALG HYPCGRVMPLQQHCQYSSSSMLSPPQIASPSGQRRAYLSVSLAPQPAMDLVLVASPNG PHLRLLKQAMALAVFSMRAIDRLAIVTNATTATRAFPLRRMSSHGKRMALQVIEHLCC VGGTDPVGALQKGLKILEDRAHQNPSSCILHLSDHPIRSCFGVDMNRFNIPVHQFHVG LGFGVQNGFVMHEFEELLARLLGGVISDTQLRIGEHGGVVRLGELRGGEERRIPLDLV SDCGFILVGYSYLEGGREDQFRTGEVAVGFEEKGDNRYCGVRDAGGLSIGGERRSSCC AERWDYLDPFMARRWAKHFNVYRA</aaseq>

Gene Sequence

<dnaseqindica>3273..4631#1961..2053#77..223#gaagaggaggaggaagagctagctatcctatggtgctagctgtagctagctccgacgactgaggtgaggagacgcaatggcggggagatgcgccggcggcggcgacggcggcggcgagggcatgctggcgcggctgcggagggcggcagccaggcggatcgggctctcctgcgcctccttcttctcccacgccgccacctccccttccccgcctcccaagaccgtatgcattctctctctacatttcatagattttcttttcttttctaacggttcagatataatttagcagcaatttgttcttaagaaagagtccagctacccaaaatgcctcattttttttctgcattttggggtgtttcttcccagttggtagatgttcaagatacactaagaagggaaaaaaatgaggctgtttttttttcttttctgtggttaattaagttttgggattttgttttcaccatcaatgtatcggtttctggttgttcttggctttcagtttcttgctatgttttgggactgggcattttttgtctctctactaccatctgcaggtgattttcaagttcctttccttctagcagtaaaactcaatgagctgtcactgcctgtccttttcacctcccacattgcaaccctgcttgattctctccttccatttcagatgttgtttcatcaaaagcaaaaaagaaaaaaaaaggtctcccattgccacatctccttgcatttttttccaaaagagaaaaatctcctcccctagtggcctgctgcattgctgttttgcattttccaacagaaagatatgtcctggtttgttttggtgatcttggcctacaaaattttgtggttaaagttacatacgtttgaacatttaaactttgcttctcgttttttatacttttcttttgggcattctagaaatgagtatcttgcatgcccttctattttatctgtattctgtactgaagttccaaccagaatgaggtgtgtactccttttgcatttccccccttttcttgagtttgcgttgtgaacagtgtgctaacagtggctgtgtgtggcctacctggtttatttgatactgatcattcatttattggaattattgttctaggagtagctctcatccatcccatcttgtactagtatcctgagaaaaaagaattgcaatagggggggggggggtaccattcttgtggttcggtccatgtttatggtcccttcatttttctcccagagatctactttggatctacaattctagacatatatagtagtagtagtagtagtttgatgttaaaagctgtgaacaagttgtattttgggtttatttatacttgagatattttttttttgttgttgtttcagttgttggtgaaagttgtgcattctctctggtcttcgtacattttccacgtagaccgtctgttgatggttgttgcgaattgggcacatatttccacggagcttttatgtcttcccttttcctcaattttttttttaaaaatgggcatttatatttctttatcctcccgaagttgtgttttcttggaattggttatcatctttacatattgtccacttatcggtgcattgtactaccttgctaacaaactctagattaatatctttcttcagtaacttaactgttattagtgttaatgtgtaggcactaggcagtactgttactgtatgagatcagtgtgtggggactgaattgtgtgtctagattttctcgcttaacagttaccaaacattgtcgatgcccatgtgcattttatcatatcattgataggtaaataggaggggaaagtaccaaaatacactggaggagacaatcttgtttttcatttactttttctgatgtagaagcagattattctactagtcaagaacagtaggtattttgcctattagctgtattgcaatgtagtaacagattgtggtgtgtatgcagatctcatgctcagcactgaatgcgcctgcagacagcactgatgaagaccaggaaaagctggaggagcccactagcacaagaatggctgacaaggtgccatccctatgtccattttcctccttttcatgttctggaccacaactgcatggatccactatggagttttctatatgtaaatgtgtttctctaaccaagtagtataattatgtttatatttaacctcctattaacttgagaataaatcagagttatgcttgactgccatcaggaattaacaactgagcaagaagacaggctaaaaagaagaattgggttaagcggttgattgcaataggaaatattattgtttatatagattcctcagcgttgaaggttgttgatgctctagatgattacctctgaaataacctattctggttagccaaagtgtattgtcaaatgttgaatcatgatgatctagccaatgtggttagcgttttgccatttccacgactacatgttttgttttgaagaaaaaacagtgacgctattgtaagcattttcttaaaaaagtatgtaccaatttatttagtgaaaatgatgggttgcatggccatccactagcatctaccattgggccatataagcgttatgtttttttgttagtttcaataagttgggagctttagtactttttggtggcaattggtgaacaattatgtggtctcccagataacatgataattgtttccctagtgccacataaaggtacaaacaataacaggtaaataccttacgacacattgcaaccaacatgtcaatgcatcagtattacagaaatcttgaggaagacatgttctttttttatttgtctaacagagaatttggaatgtcggggctattggccatgcatattatgcatgatgccttctgcatgaattaattcatatgtaagtcatgatgcatataaatataatcagcttgtttgtttcagtagtacaagaatagttctgcaaagattgaaatgtagtttgtgaagattagcttcgattggatgcatgtttttggaattttttttgtttgctaacagaccatgaaaaattcatacaatgaataattaaaaaacaaaatatgtccgcgtcgtaataatcgatgaatagttctctgtccaggaattcgctctataatgagtagtttccattgttttataataagtgtagtgattcttttatggtaagttatttgatatgcgattttactttatactctcatctgatgtgtattctgataaataataccattaattgtaatattttattcaattcatttgcagaatctctgtgcaatatgtctggagcccctcagcaccggcagcgttgatattgacaatggtgacaggccagcaatcttcacatcacaatgctcccactccttccacttcctatgcatcgcctccaacattcggcacggcaatgttacatgtcccatctgccgtgcacagtggtctcagctgccgcgtgacttgaaggtgccaccattgctgcagaacaaccagtctgacccaatcctccgcatccttgatgacaacatcgcgacatctcgtttcaacagaaggtcatccatccgtgctgcccggtacaacgacgatgatccggttgagccttacaccttgaccgagcatgtggatccatgccttcgcttcgctctgatcccatccccagtggcggctcaccatcatgctctcggacattacccttgtggccgtgtgatgccactgcagcagcattgccagtacagcagctcctccatgctctcaccgccacagattgcttcaccaagtgggcagaggcgcgcttacctctccgtcagtctcgcgccacagccagccatggacctagttctggttgccagccctaatgggccacatctcaggctcctgaagcaggcaatggcgctggctgtcttctccatgcgcgcaattgaccggttagccattgtcacaaatgccaccactgcaacccgcgccttccccttgcgccgaatgtcatcccatggaaagcgaatggcattgcaggtcattgaacacctctgctgtgttggtggtactgatcctgtaggggcattgcagaagggcctgaagatactagaggaccgggcgcaccagaacccaagcagttgcattcttcacctgtcagaccatccaatccgaagctgtttcggggtcgacatgaaccgtttcaacatcccggttcaccagttccatgtcggcctcggtttcggggtgcagaatggctttgtgatgcacgagtttgaggagctcttagcgcggttgcttggcggtgtcataagcgacacccagctcaggattggcgagcacggtggagtggtgaggctaggtgagctgaggggtggcgaagagaggaggatcccgcttgacctggtgtcggactgcggcttcatacttgttggctatagctatctggaaggtggaagggaggatcagttcaggacaggcgaagtcgctgtcggtttcgaagagaaaggcgataaccggtactgcggggtcagggatgccggtggtctgagtatcggcggtgagaggaggagcagctgctgcgccgagagatgggactaccttgatccgttcatggcgcggcgatgggcgaagcatttcaatgtgtatagggcctgagttaaaaagagggggagcttggggctttgaagtgatcagctcagcaagtctggtttaccagtttgacagcatatgattcttgttggctctttattttttttttcctctcttaacattcctgcaagcatctcatgatcatcagaggaaatgtttgcttttttggcttttgttgtggatcagggatccatttgtaagatgtctggttttgcatcagatgtgtgcaatgtgcacaaggctttctgttctcaatctgtatgtgtgaatcggactgtgaacaaaactcagcacaaagaatgaaatatggctgcattggagtgagttatttt</dnaseqindica>

External Link(s)

NCBI Gene:Os09g0298500, RefSeq:Os09g0298500