BGIOSGA030709

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Revision as of 09:46, 25 June 2012 by 127.0.0.1 (talk) (Created page with "{{IndicaGene| GeneName = BGIOSGA030709| Description = BGIOSGA030709| Definition = Oryza sativa Indica Group BGIOSGA030709, complete gene.| tag = | tid = BGIOSGA030709-TA|...")
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Gene Name

BGIOSGA030709

Description

BGIOSGA030709

Definition

Oryza sativa Indica Group BGIOSGA030709, complete gene.

LocusTag

'

Ensembl Transcript ID

BGIOSGA030709-TA

Ensembl Protein ID

BGIOSGA030709-PA

Length

8024

Source

Oryza sativa Indica Group 

 ORGANISM  Oryza sativa Indica Group
           Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
           Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; BEP
           clade; Ehrhartoideae; Oryzeae; Oryza.
Chromosome

Chromosome 9

Location

Chromosome 9:12371291..12379314

Sequence Coding Region

12371291..12371548,12372195..12372474,12372839..12372915,12373504..12373549,12373690..12373933
,12374139..12374437,12374539..12374615,12375203..12375248,12375389..12375632
,12378991..12379063,12379201..12379314

Genome Context

<gbrowseImage1> name=IndicaChromosome09:12371291..12379314 source=RiceIndica09 preset=GeneLocation </gbrowseImage1>

Gene Structure

<gbrowseImage2> name=IndicaChromosome09:12371291..12379314 source=RiceIndica09 preset=GeneLocation </gbrowseImage2>

Coding Sequence

<cdnaseq>ATGGCAATGGTGCGGGAGCTCGAGTTGATGACGAGCTGGAGCAACAGCATGGGGCGACACCGCTACCCAACGCGCATCCTCGTCGATTCCTTCGGGCATAAGTGCAGTGCCTCTGACAAGGGTGTGTGGACCTCCTGCAGCATTCGCGCACCCTTGCAAGGACGCGGCTCCTTCCGACGTGGCGCGAATATTCGCTTTGGGAGGTATGAGACTACGCTCCATGGTGGAGCGTTGGGCGTGACCTTAGTGTGCGCATATCAAGCAACCAAGCAAAGCTTCCTCTTCTTCTCCAAGAACTCCAAGAACCTTCTCCTTCATCTTCTCCACCATGATTCCTTCCATCGCATGAGCTCCATCTCCGGCGTGTCGATCGAGATCACCGTTGCTGCTGCCGAGGTGGAGAAGGAGGTGTTTGATCGATCGGTCGATGGAGGCGAGCTCGGCGGCGACGCCACCGGACCTGTCGCTGCACATCAGCTTGCCGAGCAGCGCGGCGGTGGCGACGTCGGGGGGAGGGCGTGGCGGCGGCGGGGTGGTGGGGCGACGCCCAAGTCGGTGCTGGAGCTCATGGACGTCAAGGATCTGACGCTAGCGCATGTCAAGAGCCACCTCCAGATGTATCGCACCGTGAAGAGCACTGACAAGCCTGCAGCCTCTTCAGGGCCGGCGGACGGCGGCTCCGGCGACGAGGAGTTCGCCGGCGGCGGGCAGGCGGCGTCGGGCGGCGGCGACAGCATGTGCCTGAGGGGTGGCGGCGGCGGCGGGGTGGCCGCGGCGGCGTTCGCGGAGCACGGCCGGTCGGCGTCGGAGGGCGCCGCCAGCTCGGTCGGCGGCGGCGGCGGCGGCGACATGGACCAGTCGTCGGCCGGCAACACCAGCACCACCAGGTGGAGCAACTCCTCAAGAACCAAGGCACACCACAACTTTGGCATGCTTGATGATGTATNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCCGGCGCCGCCGCCCCCGGCGTCATCGGCGGCGCGCACCACCACCACCACCACCTCCACTGGCGGCCAGCCGTTCGTCGGCGCCCTCGCGTCCCGCTTCATGCCCAAGCTCCCCGCCAAGCGCAGCATGCGCGCGCCGCGCATGCGCTGGACGAGCACCCTCCACGCCCGCTTCGTCCACGCCGTCGAGCTCCTCGGCGGCCACGAGAGGGCGACGCCCAAGTCGGTGCTGGAGCTCATGGACGTCAAGGATCTGACGCTAGCGCATGTCAAGAGCCACCTCCAGATGTATCGCACCGTGAAGAGCACTGACAAGCCTGCAGCCTCTTCAGGGCCGGCGGACGGCGGCTCCGGCGACGAGGAGTTCGCCGGCGGCGGGCAGGCGGCGTCGGGCGGCGGCGACAGCATGTGCCTGAGGGGTGGCGGCGGCGGCGGGGTGGCCGCGGCGGCGTTCGCGGAGCACGGCCGGTCGGCGTCGGAGGGCGCCGCCAGCTCGGTCGGCGGCGGCGGCGGCGGCGACATGGACCAGTCGTCGGCCGGCAACACCAGCACCACCAGGTGGAGCAACTCCTCAAGGGACCCATGGCTGTCGTCCAATTCTTGCAACATGGACGCCCATCGCTCCGTAGGATTGTCTTCTCCTATTGAGAACTTGGAACCGTGCAGATCGAGCAGCTCGCAGGTGTCCAACCATGAGCTGAGTAGCCCTAGTCTCGAGTTCACTCTAGGGAGGCCTGACTGGCACGGTGCAGATCATGATTAG</cdnaseq>

Protein Sequence

<aaseq>MAMVRELELMTSWSNSMGRHRYPTRILVDSFGHKCSASDKGVWTSCSIRAPLQGRGSFRRGANIRFGRYETTLHGGALGVTLVCAYQATKQSFLFFSKNSKNLLLHLLHHDSFHRMSSISGVSIEITVAAAEVEKEVFDRSVDGGELGGDATGPVAAHQLAEQRGGGDVGGRAWRRRGGGATPKSVLELMDVKDLTLAHVKSHLQMYRTVKSTDKPAASSGPADGGSGDEEFAGGGQAASGGGDSMCLRGGGGGGVAAAAFAEHGRSASEGAASSVGGGGGGDMDQSSAGNTSTTRWSNSSRTKAHHNFGMLDDVXXXXXXXXXXXXXXXXXPAPPPPASSAARTTTTTTSTGGQPFVGALASRFMPKLPAKRSMRAPRMRWTSTLHARFVHAVELLGGHERATPKSVLELMDVKDLTLAHVKSHLQMYRTVKSTDKPAASSGPADGGSGDEEFAGGGQAASGGGDSMCLRGGGGGGVAAAAFAEHGRSASEGAASSVGGGGGGDMDQSSAGNTSTTRWSNSSRDPWLSSNSCNMDAHRSVGLSSPIENLEPCRSSSSQVSNHELSSPSLEFTLGRPDWHGADHD</aaseq>

Gene Sequence

<dnaseqindica>1..258#905..1184#1549..1625#2214..2259#2400..2643#2849..3147#3249..3325#3913..3958#4099..4342#7701..7773#7911..8024#ATGGCAATGGTGCGGGAGCTCGAGTTGATGACGAGCTGGAGCAACAGCATGGGGCGACACCGCTACCCAACGCGCATCCTCGTCGATTCCTTCGGGCATAAGTGCAGTGCCTCTGACAAGGGTGTGTGGACCTCCTGCAGCATTCGCGCACCCTTGCAAGGACGCGGCTCCTTCCGACGTGGCGCGAATATTCGCTTTGGGAGGTATGAGACTACGCTCCATGGTGGAGCGTTGGGCGTGACCTTAGTGTGCGCATATGTAAGCTGTATGCGTACGTATAAATGTTGAGCTTGCAGTACATGTATACTTGTTTTTTTCTTCTTTTTTATGAGGTCCTTTAATTCCATTGTCTGTATTATTTATGCTAGTATGGAGGATGATGGTGGCAGTGACATAAAGTATACAAAAAGCATAGTATAGTATACGTATGGAAACAAAAGCATGCTACCTTTGACTCCACTTGCATTGCCTGCTAACTGCCATTATTTAAGGAATACATGGTTGAATGCCTGCCTAAACATCAAGATAACCTCACATTCTCCTCTCTCTCTCTCTCCTACCTTGCAATTAAGGGTAGCAGCAGTACTCTCCTCACTGCTGGCTGACTGCTCCCATTTTCTCTCTCTACTCTCTCTCTCTCTCTCTCCTCTATTCCTTTTATACTTGTTGTTGGTAGCTAGGAGTATAGCAGGACAGCACAAGGAACCAATTCATGCATATATCCCTGGTGTCTCTCATGCATGTTAGTGTGAAGAAAGAAGAAGCTTGAGAGAGAAGAGAGAGTTAGAGAGAGAAAGTAGAGTGTTTGTAGAGAGAGAAAGTGGTGTGTGTACTAGTAGTAACTCCAAGCCAGTGCTAGAGACAGAGATACAAAAAGGAGACATCATCCTTCTCTTGGCCAAAGCAAGCAACCAAGCAAAGCTTCCTCTTCTTCTCCAAGAACTCCAAGAACCTTCTCCTTCATCTTCTCCACCATGATTCCTTCCATCGCATGAGCTCCATCTCCGGCGTGTCGATCGAGATCACCGTTGCTGCTGCCGAGGTGGAGAAGGAGGTGTTTGATCGATCGGTCGATGGAGGCGAGCTCGGCGGCGACGCCACCGGACCTGTCGCTGCACATCAGCTTGCCGAGCAGCGCGGCGGTGGCGACGTCGGGGGGAGGGCGTGGCGGCGGCGGGGTGGTGGTGGGAGGAANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGGCGCCGCCGCCCCGGCGTATCGGCGGCGCGCACCACCACCACCACCACCTCCACGGCGGCCAGCCGTTCGTCGGCGCCCTCGCGTCCCGCTTCATGCCCAAGCTCCCCGCCAAGCGCAGCATGCGCGCGCCGCGCATGCGCTGGACGAGCACCCTCCACGCCCGCTTCGTCCACGCCGTCGAGCTCCTCGGCGGCCACGAGAGTACGCCCCCGCCATCATCGTCGTCGTCCTCCTCCTCCTTCTCACCACCATCATCAACGAGCTCGATCAATCTGATGAGAATCCAATCTTGTTCTTGGCAGGGGCGACGCCCAAGTCGGTGCTGGAGCTCATGGACGTCAAGGATCTGACGCTAGCGCATGTCAAGAGCCACCTCCAGGTATCCCGCCATTGCCGACCAATTCTCACAGCTCGATCGATCGATCAAACACCACTCACCACTGCACCATCTCTCTCTTTCTCTCTCTCGATTTCGATTCCATTCAGCTTCTGTTCTTGATCATCTTGTTTGGGTGAGACAAAGATGCCAATGCAGTAACTCCTGAGTTAGTGAAGAAACTGCCATTCTTGGGAGTAGAGAGAGAGAGAGAGAGAGAGTGTGACATGTTTGGGGATGTGTGTGCAAGAGAGAAGAGAGAGAGAGAGGGGAAAAAAGTTGCCATCATTACACAATAATGCATTGCATCTGCATCTGTGCTACTAGCTCCTTCCTTAGCTTTAGTCATACTAGCGTATATGTGCACGGCCCAAAGCACTCTCACACACAAACACAAGAGAGAGAGAGAGAGAAGAAGATGAGAGATGAGAGAGAGTAGGACATATTTTGTGTGTGTTTCTTTGCTGCTTGTCTTTTGCAATGGCTTCAACCTCCTGGTTTCATTTTGATCTCACAAAAAATGTGTGTGTGTGTGTGTAAATATATATATTGATCTTCTTTTTGTTGGACTTTTGTGTTTTATTACTGCAGATGTATCGCACCGTGAAGAGCACTGACAAGCCTGCAGCCTCTTCAGGTGATTTTTTTTACCATGGCAGCTACTAGTAGTAGTAGTAGTAGCTAATTTAGCTAAGCTCCATTTTGCTTTTCTTTTTTTTTTGGCGTTGTGCATTGCGTTTTACATTACATTGTTGCTATGGTTTTTTTGACGTGTAGGGCCGGCGGACGGCGGCTCCGGCGACGAGGAGTTCGCCGGCGGCGGGCAGGCGGCGTCGGGCGGCGGCGACAGCATGTGCCTGAGGGGTGGCGGCGGCGGCGGGGTGGCCGCGGCGGCGTTCGCGGAGCACGGCCGGTCGGCGTCGGAGGGCGCCGCCAGCTCGGTCGGCGGCGGCGGCGGCGGCGACATGGACCAGTCGTCGGCCGGCAACACCAGCACCACCAGGTGGAGCAACTCCTCAAGGTACACACATGGCAGAGTTGCATTTCAAGTCTTTCAGATTAATTATATATCTACATTGTTATGCCATCTTTAATTAATTAAAAATGAAATTAATCAATCAGAATGTCATGAGATGATGATGATGATGATAATAATACTAGGATAGGAAGAGGATGATATGATGGATGGGTGTGCTATGTGTGTTTTTAAGTGTGTTTTAGCTTAGAACCAAGGCACACCACAACTTTGGCATGCTTGATGATGTATNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCCGGCGCCGCCGCCCCCGGCGTCATCGGCGGCGCGCACCACCACCACCACCACCTCCACTGGCGGCCAGCCGTTCGTCGGCGCCCTCGCGTCCCGCTTCATGCCCAAGCTCCCCGCCAAGCGCAGCATGCGCGCGCCGCGCATGCGCTGGACGAGCACCCTCCACGCCCGCTTCGTCCACGCCGTCGAGCTCCTCGGCGGCCACGAGAGTACGCCCCCGCCATCATCGTCGTCGTCCTCCTCCTCCTTCTCACCACCATCATCAACGAGCTCGATCAATCTGATGAGAATCCAATCTTGTTCTTGGCAGGGGCGACGCCCAAGTCGGTGCTGGAGCTCATGGACGTCAAGGATCTGACGCTAGCGCATGTCAAGAGCCACCTCCAGGTATCCCGCCATTGCCGACCAATTCTCACAGCTCGATCGATCGATCAAACACCACTCACCACTGCACCATCTCTCTCTTTCTCTCTCTCGATTTCGATTCCATTCAGCTTCTGTTCTTGATCATCTTGTTGGGTGAGACAAAGATGCCAATGCAGTAACTCCTGAGTTAGTGAAGAAACTGCCATTCTTGGGAGTAGAGAGAGAGAGAGAGAGAGAGTGTGACATGTTTGGGGATGTGTGTGCAAGAGAGAAGAGAGAGAGAGAGGGGAAAAAAGTTGCCATCATTACACAATAATGCATTGCATCTGCATCTGTGCTACTAGCTCCTTCCTTAGCTTTAGTCATACTAGCGTATATGTGCACGGCCCAAAGCACTCTCACACACAAACACAAGAGAGAGAGAGAGAGAAGAAGATGAGAGATGAGAGAGAGTAGGACATATTTTGTGTGTGTTTCTTTGCTGCTTGTCTTTTGCAATGGCTTCAACCTCCTGGTTTCATTTTGATCTCACAAAAAATGTGTGTGTGTGTGTGTAAATATATATATTGATCTTCTTTTTGTTGGACTTTTGTGTTTTATTACTGCAGATGTATCGCACCGTGAAGAGCACTGACAAGCCTGCAGCCTCTTCAGGTGATTTTTTTTACCATGGCAGCTACTAGTAGTAGTAGTAGTAGCTAATTTAGCTAAGCTCCATTTTGCTTTTCTTTTTTTTTTGGCGTTGTGCATTGCGTTTTACATTACATTGTTGCTATGGTTTTTTTGACGTGTAGGGCCGGCGGACGGCGGCTCCGGCGACGAGGAGTTCGCCGGCGGCGGGCAGGCGGCGTCGGGCGGCGGCGACAGCATGTGCCTGAGGGGTGGCGGCGGCGGCGGGGTGGCCGCGGCGGCGTTCGCGGAGCACGGCCGGTCGGCGTCGGAGGGCGCCGCCAGCTCGGTCGGCGGCGGCGGCGGCGGCGACATGGACCAGTCGTCGGCCGGCAACACCAGCACCACCAGGTGGAGCAACTCCTCAAGGTACACACATGGCAGAGTTGCATTTCAAGTCTTTCAGATTAATTATATATCTACATTGTTATGCCATCTTTAATTAATTAAAAATGAAATTAATCAATCAGAATGTCATGAGATGATGATGATGATGATAATAATACTAGGATAGGAAGAGGATGATATGATGGATGGGTGTGCTATGTGTGTTTTTAAGTGTGTTTTAGCTTAGAACCAAAGGCAACACCAACAAACTTTGGCATGCATTGATGATGTATCTAAATATGAGTTAGTGACATGCAAAATTAACCTGCCAAGTACAACCTCTATTTATTAATTCCCAAAAAAATCTCATGGAGGAGAAGGGAGAGAGAGAGATAGTAGTAATGTGTGGTGATGCATGGCTAAAAAAGCTTAGCAAAAGAATGTTTTGGGGGCGCACACACACACACACCTGGAGAGGGAGTTGCCTATGTTTAGGTGGCCAATGTTGTTATGTCACACAAAAGACCAAAAAGTCACACACCCCATGGCTTGGCCTCCTCCTCCCCCCTTGACCTGTGCAGTTAGCTAGGCTTCTTCTCTTCTCTCCCTCTGTGTTTGGTTTTTGTGGAGCTAAAAACATTTTAAAAATCTTGCAAACATTGTGTGTAAAAATAGGTTCTTGGGCTCTGCCCATTGTCCTCTAGCTTCTCTCAAATCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTTTCTCAAACCTAGGGAGGGGAGGGTTACTCAGGCAGGGCTCCATTATCATTTCTTATCAATGCATGGCTCTGATTCCAGGGGGATGGGGCTTTGACCTGACATGCCCTATTGCCTAGGAATATGTAACCAAGGACTTGCTGCATTCTTGGTTCTTTCTCCCTCTCTCACCAGTCTCTTCAATGCCCTTTTCTTCCACCTCTTGGGCAATTATTAGCATGGATGGAGCTCACCTTTTCACTCTACCCTCTAGCTGTGATTAAATCATTGACTAATCCTAATTCATAAATATAAGGGATTCAACTATGTAACTAGATGTACTAGATCCTAGTATTACTAGTGTGTTTTGATTCTGTTAGGAGGAGTGATTAGCGTTTGTCGTAAGTACTAGTATTAAACTATAGGGGATTAGTGTAGATCATTTTTTAAAAAATTAGTGAGTGTGCTTGGGCAGATTTTACTCCAGCCATTGGCGTGAAAACTTTGATCTTTGGGCAGCTTGGAAGCAAGTACAGTTCAACCTGTCCTTGGCTGCATTCGCTGCTTTTTCTTTCTCAGGACTCACTGCAACTTTCTTGCCATCCCCAACACCTCCCTTTCGGTCGTGTTTGATCAGTTGCATTGCTGGTTTCTTCGCCGCTTTAATTTCTCCATCTTTCTTCTGTTCCTTATTGGCTAAGTAAAAAATCATTCTCAGCAATCAAGTTTTGAAATTCAAATTAGCTTCAGGTTTTATCTATCTAATAATTCTCTGACTAGTTCTCTTTCTTTCAAGACCTGTTCTTGTTCAGAACTCTTATGCAGTTGAGAGTTCAGTTGTTCATGGAAGTAATGGCAATGCCTGGTCTAGTCTTTGAGCAGTATCCTCCTTATGCTCTTGATTTTCCTTCACTTTAGCCGTTTCAGTCAAACTTTGGGGACAAATTAAAGTCAGCTGGTCAAGTGCATACATACCACGTCATATTTTTTAGATGAATCCATTGTAGTATTAAATACTAGTGACAAAAAAATATAACTAAATGGCATTAAATTGCAACCTTCTTCCCCAAAATAATTGGGCACAACTACCTTGCTTGCATATGCTTTATAGTACTCCTACTTATTACTTCCTTGAATCCATGAGGATTCCAGGAATTTGGTCAGGTCAAATGTCCAGGAGGAATTAGGCTATCTTTTTTTATCTTCTTCTTTTTCTTCTAGGTAGTAGGATCGTTGTGCACATATAAACAAAACAAAATAGAAATTTAAGAGGAAACCCTCCCAAAAAAAATACGACTATCAATTATGAGTGATTTTACAGTTCTTGAGGAGGTACAATGATACATTTTCTATTTTAAAATTCAGTAACTTTGATACTATGAGGTACAGAAATTTGCAAAAAAAAATTTGGTACCTCTCAAGTACTTAAAATATCTTATCAATTATATTTCAGCAATGTTGTCGTTGCTCGAGTTGTGCAAAAACATTTCTGATGAACAAGTGAAGATGTATGCATATTTAGAGAGGGAAACACATGCATTTTTTAATATACATTCTCATGACAAATTTTGGTGTTCTCGTCTCATTTTAGTCTAGCTTAGATTAATGGCATCCATATATTGGTGAACTGAAACAGATTGTATATGTCCAGTCTTGAACAAACTTCATTATACAATGCATAATCAGAAAAGATACAGACATATATTGGCAGATCACATAAAGTGGTGTATCTATGATTGGGTGGTATTTTGGACATACAAAGTCTACTGGTCCCTCATTTGTTAACAGCATACATTTGTTCCTATCAAGACAAAAGCACTTTACAACAGTTTGGTAGTAAGTTGGTGTTATGTGCGTGTCTATTTAGATAGAGTGGTAGTAAAGGAAGGACACTTTTTCTTGATATACCAAAATCACACATAAAAAAGAAGTGTCATTTTCATGATCAACATGTGGGGTATGAACAAAAATGTTCTCCCCCCTCCAACCAACATTGAAGTCATCACACATAAAAAGCAAAAACATTTAACAATAATACATGCAGACACATGTGCATGCATGTGTGGATCACGCAAGGACATACTAATTCAATTAGGTATTCACAATTAATTAGTGCAGGAAATGACATGTAATTACAATTATATATGCACAACGATCCTTGTGTATTTGTGTGACCCATTGTAGTAGCATTTGATTCCTTTCTTGTGCCTTTCTCTACATTGAATTCGATCTTTGCCAACAGCGGCTTGCTGATGAGCTCCTGTGCCATTGCACTGCTGAGCTGCACCAAACAGGGACATCTTTTAAGAGCTTGTTGCCTGGAAATGATCCATGTAACCAACTGTTCAGGAAGAGCACACTGTTTGCTGCTCACTTTAGCTAAAGCAAAACTGTGTGCATTATGCAATGCATATGCATCCTTCCATCTACCCCTGTGTCCTTTGCCCCCCAAACTGTGTAACTACAGTTTACCATGCACATACATACAATGCACATCTACCCAATTGTAGCATTGTTGCAAGGCCTACTTCAGAATTCAGTTAGTCCCCAATTGATCCAACTGCACACATATACATTTACATATACATATACACAAACATACCAGCTTGGAGAAAAGGTTGTAACAACTTTGCTAAATGTGAGATGTGTAATGTGTGTTCTTCCTCTTTTCAGGGACCCATGGCTGTCGTCCAATTCTTGCAACATGGACGCCCATCGCTCCGTAGGATTGTCTTCTCCTATTGAGGTATATATCCTTACATTGTTCAAAGCTTCTTTCGATTCCTAGCTAACTGCATATCCATGCAGAAATTCATTAGCTCGCATTCATTCTGAACATGATGTCTGAAACTCTGAATTTTTTTTCGTTTGTGCGTGTTTCAGAACTTGGAACCGTGCAGATCGAGCAGCTCGCAGGTGTCCAACCATGAGCTGAGTAGCCCTAGTCTCGAGTTCACTCTAGGGAGGCCTGACTGGCACGGTGCAGATCATGATTAG</dnaseqindica>

External Link(s)

EnsemblPlants:BGIOSGA030709

Retrieved from "https://ngdc.cncb.ac.cn/ricewiki/index.php?title=BGIOSGA030709&oldid=29913"