Os10g0560400

From RiceWiki
Revision as of 08:48, 21 June 2012 by 127.0.0.1 (talk) (Created page with "{{JaponicaGene| GeneName = Os10g0560400| Description = Similar to CONSTANS-like protein CO9 (Fragment)| Version = NM_001071910.1 GI:115483415 GeneID:4349376| Length = 2666...")
(diff) ← Older revision | Latest revision (diff) | Newer revision → (diff)
Jump to: navigation, search
Gene Name

Os10g0560400

Description

Similar to CONSTANS-like protein CO9 (Fragment)

Version

NM_001071910.1 GI:115483415 GeneID:4349376

Length

2666 bp

Definition

Oryza sativa Japonica Group Os10g0560400, complete gene.

Source

Oryza sativa Japonica Group

 ORGANISM  Oryza sativa Japonica Group
           Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
           Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; BEP
           clade; Ehrhartoideae; Oryzeae; Oryza.
Chromosome

Chromosome 10

Location

Chromosome 10:22525061..22527726

Sequence Coding Region

22525187..22525540,22526949..22527488

Expression

GEO Profiles:Os10g0560400

Genome Context

<gbrowseImage1> name=NC_008403:22525061..22527726 source=RiceChromosome10 preset=GeneLocation </gbrowseImage1>

Gene Structure

<gbrowseImage2> name=NC_008403:22525061..22527726 source=RiceChromosome10 preset=GeneLocation </gbrowseImage2>

Coding Sequence

<cdnaseq>atgtcggcggcgtcgggcgccgcgtgcggggtgtgtgggggaggggtgggggagtgcgggtgcctgctgcatcagcggcgtgggggaggcggtggtggtggaggtggaggggtgaggtgcgggatcgcggcggacctgaaccgggggtttccggcgatctttcagggggtgggggtggaggagacggcggtggaaggggatggaggagcccagccggcggccgggctgcaggagttccagttcttcggccacgacgaccacgacagcgtcgcgtggctcttcaacgacccggcgccgcccggcgggacggaccaccagcttcaccgccaaaccgcgcccatggcggtcggcaacggcgcggcggcggcgcagcagcggcaggcgttcgacgcgtacgcgcagtaccagccggggcacgggctcacgttcgacgtgccgctcacccgaggcgaggccgccgccgcggtgctcgaggccagcctcggcctcggcggcgccggcgccggcggcaggaacccggcgacgtcgagcagcacaatcatgtccttctgtgggagcacgttcactgacgccgtgagctccatcccgaaagatcacgcggcggcggcggcggtcgttgccaacggcggcctgagcggcggcggcggcgacccggcgatggaccgggaggcgaaggtgatgcggtacaaggagaagaggaagcggaggcgatacgagaagcagatccggtacgcctcgcgcaaggcctacgccgagatgcggccgcgcgtgaagggccgcttcgccaaggtgcccgacggcgagctggacggcgcgacaccgccgccgccgtcctccgccgccggcggcggctacgagcccggccggctcgacctcggatggttccgttcgtag</cdnaseq>

Protein Sequence

<aaseq>MSAASGAACGVCGGGVGECGCLLHQRRGGGGGGGGGGVRCGIAA DLNRGFPAIFQGVGVEETAVEGDGGAQPAAGLQEFQFFGHDDHDSVAWLFNDPAPPGG TDHQLHRQTAPMAVGNGAAAAQQRQAFDAYAQYQPGHGLTFDVPLTRGEAAAAVLEAS LGLGGAGAGGRNPATSSSTIMSFCGSTFTDAVSSIPKDHAAAAAVVANGGLSGGGGDP AMDREAKVMRYKEKRKRRRYEKQIRYASRKAYAEMRPRVKGRFAKVPDGELDGATPPP PSSAAGGGYEPGRLDLGWFRS</aaseq>

Gene Sequence

<dnaseqindica>2187..2540#239..778#cccctcccttgccctagctggctagcctcttctcctccacacacgcgccgcgacgccagcgacaccgcgccgctacatgatcgatcgacctcgagctcgtgcctccctacttgcacaaaccaacaagccgcgcgccaccacacagcccaggactccaggagtggtggtggtgctaggtagctagctagtagtagtttttctttagctagctagcttgggcgcgcgcgcgcgcggcggcatgtcggcggcgtcgggcgccgcgtgcggggtgtgtgggggaggggtgggggagtgcgggtgcctgctgcatcagcggcgtgggggaggcggtggtggtggaggtggaggggtgaggtgcgggatcgcggcggacctgaaccgggggtttccggcgatctttcagggggtgggggtggaggagacggcggtggaaggggatggaggagcccagccggcggccgggctgcaggagttccagttcttcggccacgacgaccacgacagcgtcgcgtggctcttcaacgacccggcgccgcccggcgggacggaccaccagcttcaccgccaaaccgcgcccatggcggtcggcaacggcgcggcggcggcgcagcagcggcaggcgttcgacgcgtacgcgcagtaccagccggggcacgggctcacgttcgacgtgccgctcacccgaggcgaggccgccgccgcggtgctcgaggccagcctcggcctcggcggcgccggcgccggcggcaggaacccggcgacgtcgagcagcacaatcgtgagtggttcgaattcgtctccctctctctctcttgatcatccctcaaatttcccattaatttaaacacttcttttaaattttgcgtccaaattatagctgcgcacatgcaaattaataattagttggcagaaatgtcaaacggtgtcaatttatcggtccaacactctccaacctattaggagagctagctgatccataacagtgcaccatttgtacccttgctttaacttgtccttttcagagataattaacatgtcgctgagagctagtggcgatataaattaatttcacttgaaagcttatattctgaattgatttgacagttgtaagctaagtatatatctcttcatttggggaaatgttgaaaagaaaaaccattccctgaaaataaataaatgtagaaaacaaatgtgtctgaaagctgagagaagttcccctgattttgtagtgtccaaaaattacgtacagtggggcctgatggagttcgtcatttgagtgacgcatggcatggctacaattattctagagtaaaacggtcatttttcaaaagaaaaaaaaaacatgttctgtgatgacatactgtatctgcagattaattgcatctgtttaattaatttgaagggtcaatcttgtgagctttttccatacttaacactgctagcagttacctctgcaaccgaatttgtgtgcatggatgatcgatgataagttacctacattgtaatttcgaaaacaagaatgcctccataatataagtaaattgataccagcgccggttctcatttcatgcatgctagagtatcttgctgctaatttctgtccttagagagttcataaagctgttggacataagagctcatgatcttcgacaatcgacaatcggtctgcagtctgccagtctgcttgatgtgcggtcaaaaatcaaagtaaaacacaagggggcatgcatgcatgcttatatatattagtcaattttgggctgcaagattcagttatatataattctgatcaaaaggttcaagttagttcatcctggcgatttggggtttgttgcatgtatctggcctagctccagtactataatggtacaagtgcacctcatgtatctgtattctgtaatactgcaatcagatcgatcaggaaaacgttgccataatggccatatacttgtgtgtgtatataagcacgtatacctacgtgtatacacgtacacgcataccaattgtgtagcagtacgaacgttagccagttactaaatccagtgacaaatgatgcatgtctataagcaacttcatctacttgtactgttcattatatttttcaagtcaagtattcaacggtgtgtcaactgtcaactacctgcaggtaattaactgtaactaattagctgagattttcttttcagatgtccttctgtgggagcacgttcactgacgccgtgagctccatcccgaaagatcacgcggcggcggcggcggtcgttgccaacggcggcctgagcggcggcggcggcgacccggcgatggaccgggaggcgaaggtgatgcggtacaaggagaagaggaagcggaggcgatacgagaagcagatccggtacgcctcgcgcaaggcctacgccgagatgcggccgcgcgtgaagggccgcttcgccaaggtgcccgacggcgagctggacggcgcgacaccgccgccgccgtcctccgccgccggcggcggctacgagcccggccggctcgacctcggatggttccgttcgtagctagcagcctagcactataatagcagatcattatttctctctttgtatacgtactctacgtacataggccaagcatgcattgactagctaggctattggttgaaaagtttaaggtttaattaaggt</dnaseqindica>

External Link(s)

NCBI Gene:Os10g0560400, RefSeq:Os10g0560400