Os10g0563300

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Revision as of 08:48, 21 June 2012 by 127.0.0.1 (talk) (Created page with "{{JaponicaGene| GeneName = Os10g0563300| Description = WD40-like domain containing protein| Version = NM_001071932.1 GI:115483459 GeneID:4349399| Length = 5158 bp| Defini...")
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Gene Name

Os10g0563300

Description

WD40-like domain containing protein

Version

NM_001071932.1 GI:115483459 GeneID:4349399

Length

5158 bp

Definition

Oryza sativa Japonica Group Os10g0563300, complete gene.

Source

Oryza sativa Japonica Group

 ORGANISM  Oryza sativa Japonica Group
           Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
           Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; BEP
           clade; Ehrhartoideae; Oryzeae; Oryza.
Chromosome

Chromosome 10

Location

Chromosome 10:22692194..22697351

Sequence Coding Region

22692558..22692946,22693309..22693419,22693562..22693646,22693740..22693961,22694659..22695147
,22697061..22697177

Expression

GEO Profiles:Os10g0563300

Genome Context

<gbrowseImage1> name=NC_008403:22692194..22697351 source=RiceChromosome10 preset=GeneLocation </gbrowseImage1>

Gene Structure

<gbrowseImage2> name=NC_008403:22692194..22697351 source=RiceChromosome10 preset=GeneLocation </gbrowseImage2>

Coding Sequence

<cdnaseq>atggagttcacggaggcgtacaagcagacggggccgtgctgcttctcccccgacggccgctacctcgccgtcgccgtcgactaccgcctcgtcgtccgggacgtcgtctccctcaaggtggtgcagttgttttcatgtgtggacaagataagctttctggactgggcaccggattcagagtatattctatgtggactttacaagcgacccatggtgcaggcttggtcactgagccagcctgactggacctgcaagattgatgagggccctgctgggattgcatatgctcgctggagccctgacagtcgtcatatactaacaacatcagagtttcagctccgtctgactgtttggtctcttgtaaatacagcatgcatacatgtacagtggccaaagcatgcctccagaggtgtttcttttactaaagacgggaagttcgctgcaatctgtactaggcgtgactgcaaggattatgtaaatttgctgtcatgccattcctgggagataatgagtgtctttgctgttgacacggtagacttggcaggtgttgagtggtcaccagatgatagtgctattgtggtctgggattcacttctggaatacaaggttctgatatattcaccggatgggaggtgcctgttcaagtacttagcatatgaaagtggattaggtgtgaaaactgttgcgtggtcaccatgtggacagtttttagcagttggcagctatgatcaagcagttcggactttgaaccacctgacatggaaaacttttgctgagttctcacacgcagcatctattcgaaatcctactaatgctgctatatttaaggaagtggatgatccatggcagcttgacatgtcagagttatgcctaagtgaaggattctcccgtaacatgcaaggcaatggtgctgaaaatgggacagagggaggttctcgagttaagtatgctgtgatggatgctccaatcactttgccttcacagaaacccgttacagacaagcccaaccccaagcagggaattggtatgctgtcatggagcagcgacagtcactatttcttcactcggaatgacaatatgccaactgctctttggatatgggatatctgccgccttgatcttgctgctgttcttgttcagaaagatccaatccgtgctgccgcttgggaccctaattgcccacgccttgttttctgcacggagagtccgcacctgtacatgtggacaccatctggtgcatgctgcgtcaacgttccgttgccaaactttcgggttgtggacttgaaatggaactcagatggaacttgcctcctcctgaaggaccgtgattctttctgctgtgccgcaattgtctctcctttgccagaggaagaagaggctgatcaatctgatgttacctcagaagatgaatga</cdnaseq>

Protein Sequence

<aaseq>MEFTEAYKQTGPCCFSPDGRYLAVAVDYRLVVRDVVSLKVVQLF SCVDKISFLDWAPDSEYILCGLYKRPMVQAWSLSQPDWTCKIDEGPAGIAYARWSPDS RHILTTSEFQLRLTVWSLVNTACIHVQWPKHASRGVSFTKDGKFAAICTRRDCKDYVN LLSCHSWEIMSVFAVDTVDLAGVEWSPDDSAIVVWDSLLEYKVLIYSPDGRCLFKYLA YESGLGVKTVAWSPCGQFLAVGSYDQAVRTLNHLTWKTFAEFSHAASIRNPTNAAIFK EVDDPWQLDMSELCLSEGFSRNMQGNGAENGTEGGSRVKYAVMDAPITLPSQKPVTDK PNPKQGIGMLSWSSDSHYFFTRNDNMPTALWIWDICRLDLAAVLVQKDPIRAAAWDPN CPRLVFCTESPHLYMWTPSGACCVNVPLPNFRVVDLKWNSDGTCLLLKDRDSFCCAAI VSPLPEEEEADQSDVTSEDE</aaseq>

Gene Sequence

<dnaseqindica>4406..4794#3933..4043#3706..3790#3391..3612#2205..2693#175..291#attccaaccacggggcgtccaaaatagcaagggaaaaaaaaatttcaggcgagtagatttgcattcttctcccccacctcgacgccggcgagagccccccggtctcgcttccgccgcccgatccggcgccgggcccgcccgcccgccgccgcgtgacaaggggaaggcgaagggatggagttcacggaggcgtacaagcagacggggccgtgctgcttctcccccgacggccgctacctcgccgtcgccgtcgactaccgcctcgtcgtccgggacgtcgtctccctcaaggtatccgcgccattcccccccctcacctccttcctcccccgcttgatcctgttttagtggtccggaactggaatgcgggtttagggtttgtgccttctggagtagtcgctgaatctggggttgggggaaatgccatctaccgctgggctcaattttgagtgttctggttcaggaattgcgcctagttttgcccgatccgtagcctagggttcagggtaggtttgtactggatggacgaaatcagtaccaagctagctagattacctgctcaattgtgcggactagataccatgatatgcatgtttatgtttgaggagagtgataatgagactatatgttgtactgtgcctttaatacctacgattaaaatcatcagcctactcattgttcaaatacttctgtagatatgatatctatattcgataagccagatatgtataatataggctcaccaactaaacagtgaaaatatttctttatttggtgtgattgacatggaaatttctagttttaggcagcaccctcctaccacgattttgccaaaataggtgcgctaggaggtcagcttgcctagggtggctgtaggaagtctaaggtagagcttgacatcatagacttgctatccttctcgatgatctaagaaggtatggagacatgcatggtgggcacgacgggccctgtgatagggagatgctgagtgggaagggaaggggaatgatttagaggagaggaagtacctatgagaaagtagataatggggcaaaggtggaggcaatagacaatttggggtagctggcattgccctagtacgtatacggactacgtacaagggagtaggcaagcttaaggcctaggcctagcatttaatgttttctcaaaagcgacaaaataggctatccccccccacccccacccccacccccgtcacaacatgcacacagagcagcggcattacattacattctggcataggagactgagactgagcgagcaagtaggggtgcagccatggcatcgtcatcctccaccaccatgtctgcatgccacctctcaggttatgttgtctgttgttctactttaagttggccagatctgaggtgagaagtacatctttcaggcaccagattttgcctccactcagcctgaatttttcagccccatcactgtaattggctaattggcgccgctacttgtactgcggatgctcaactctctgctcccttggtttggccttcttgctggcccctccctcatttctagctttgtatctggctgggcgggcaaggactgtactgatccactatctgatagtgccttggtgaacactgaccctttaacatacctttaatcatatcacagcaataaatgcctgaatacattgtactattatataaccccacaaatcttttgcatatttgtgaacagtataactctaggaatatattgtattaataagacaatctgtcggccatatattctatgtaataactgttgaaactgtgtaggagagagattaccaattcacaatcatctcctagtatgtactgacatccaatgggcatcatattgggtgcacacacttagtgcttgggaattggaatgcaggcttaaaagttttgggccttctggagtagttgctgaatttgtgatagggggtattgtcatctggtatagctaaaatttgagccttctaattcacagaaaatatgaaatgttccttgttttgcctgatctgtagccagggttcatgagtaattggcagtatggctggaccaaagaaatgttaataccaaatggtatcgtatagtggctaatgagtgcatgctgtttctggggagatttatataagaactgctagtcatatctagagaatacaattgacaacaatgtatggtttgctttaatttatgcaggtggtgcagttgttttcatgtgtggacaagataagctttctggactgggcaccggattcagagtatattctatgtggactttacaagcgacccatggtgcaggcttggtcactgagccagcctgactggacctgcaagattgatgagggccctgctgggattgcatatgctcgctggagccctgacagtcgtcatatactaacaacatcagagtttcagctccgtctgactgtttggtctcttgtaaatacagcatgcatacatgtacagtggccaaagcatgcctccagaggtgtttcttttactaaagacgggaagttcgctgcaatctgtactaggcgtgactgcaaggattatgtaaatttgctgtcatgccattcctgggagataatgagtgtctttgctgttgacacggtagacttggcaggtgttgagtggtcaccagatgatagtgctattgtggtctgggattcacttctggaatacaaggtgcatctcttcattgtactcccattgttgttttatttgcttacttttgaaaatcatcatcatttactgtatgtcattatatatgcatataacttgttaatactttttgttggtagggtcacttatttacttcagaatttagatgggcactggttgtgaattactttatcttgcatgtatggcaaaccacaccaccttttcttcaaatggcacttataacaatttttttttgcttattctggtttactcaagtttctcggttgatatttgattacattgacggatctggttattagttggactttaatgatcaatcagttggtatattgggtcatgactcccccaaaacatacagggttatttcttaaccaatatcctgttcaagagctcattgagtcatttctctctgcagcgaaactaatctcttatctactcttaagggttctcttttctgtgtagctgaacttattttatattctactattaatagttctcctttctctgtagctgaactaatttcttattgtactcttaagggttcatcccagtctgtttttatagagctatgttttttttttctgctttagataaaatatagggttcatctcaacggatactaatctcttgttctactcttatgttgttgttagcagtttttggatttaaactgataatcctaagaacatgattgtcacaggttctgatatattcaccggatgggaggtgcctgttcaagtacttagcatatgaaagtggattaggtgtgaaaactgttgcgtggtcaccatgtggacagtttttagcagttggcagctatgatcaagcagttcggactttgaaccacctgacatggaaaacttttgctgagttctcacacgcagcatctattcgaaatcctactaatgctgctatatttaaggtaagcctactgatatctatcactaattgacatcttagcagatctagtgtttttctgttcatggtatctgattgtaactacaaaatgtcacaggaagtggatgatccatggcagcttgacatgtcagagttatgcctaagtgaaggattctcccgtaacatgcaaggcaatggtgctggtgagattactaacgatacttttatatcgcatcttgttcctccttttttgataaattatttggcatgttttatgatgccttgtgttagggccagcgctaaccttatgtttagttttggagactgatctttttttgtggtcagaaaatgggacagagggaggttctcgagttaagtatgctgtgatggatgctccaatcactttgccttcacagaaacccgttacagacaagcccaaccccaagcagggaattggttagttgctcctatttctcatgcatatggatcaggatgttggtctttttcctaatgcctaatacacttgtgaccagtgtcatgaacttgtgaactactgtagttactattacacattctgtatctgatgtgcagtagatctctaattcattttgtaaactgtgataatggttcctactataaacattatcgataacccttctaagtactaaaatccccttgcgtgatttgtgttggccattcatgaatttctagtagaatatggttcagtataaactgcattgttaacatttcatattctactattaagggttcttttttctctgtagctgaactaatctcaccttgcaattcatgtgcaggtatgctgtcatggagcagcgacagtcactatttcttcactcggaatgacaatatgccaactgctctttggatatgggatatctgccgccttgatcttgctgctgttcttgttcagaaagatccaatccgtgctgccgcttgggaccctaattgcccacgccttgttttctgcacggagagtccgcacctgtacatgtggacaccatctggtgcatgctgcgtcaacgttccgttgccaaactttcgggttgtggacttgaaatggaactcagatggaacttgcctcctcctgaaggaccgtgattctttctgctgtgccgcaattgtctctcctttgccagaggaagaagaggctgatcaatctgatgttacctcagaagatgaatgaacttgcaggccttgctctaacaatgggatgtgcagcttttaatcagtggatctacatttgtatcatatcgatagatgtacctgggtaacagcttgttctgaagttgctgatcgatctgatgatagctcagaagatgaatgtgagctttgtatgccttgctctaacaatgggagggaagacacatgtttctttccgctttaaaacacatagagacgctgtcgttgtaggctgcatctgatattcttaaaccatctttgctacacaccctacgctccttgaaactggctagattgtttttttgtagatgtcagtaaacgtggaatctttactccatttaacgtgtaatatccgttttccagcgttg</dnaseqindica>

External Link(s)

NCBI Gene:Os10g0563300, RefSeq:Os10g0563300