BGIOSGA032246

From RiceWiki
Revision as of 04:52, 26 June 2012 by 127.0.0.1 (talk) (Created page with "{{IndicaGene| GeneName = BGIOSGA032246| Description = CPD photolyase| Definition = Oryza sativa Indica Group BGIOSGA032246, complete gene.| tag = OS10G0167600| tid = BGIO...")
(diff) ← Older revision | Latest revision (diff) | Newer revision → (diff)
Jump to: navigation, search
Gene Name

BGIOSGA032246

Description

CPD photolyase

Definition

Oryza sativa Indica Group BGIOSGA032246, complete gene.

LocusTag

OS10G0167600

Ensembl Transcript ID

BGIOSGA032246-TA

Ensembl Protein ID

BGIOSGA032246-PA

Length

3610

Source

Oryza sativa Indica Group 

 ORGANISM  Oryza sativa Indica Group
           Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
           Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; BEP
           clade; Ehrhartoideae; Oryzeae; Oryza.
Chromosome

Chromosome 10

Location

Chromosome 10:3998763..4002372

Sequence Coding Region

4002027..4002372,4001744..4001892),complement(4001428..4001624,4001101..4001341),complement(4000780..4000967
,4000619..4000655),complement(4000472..4000530,3999768..3999849),complement(3999060..3999131
,3998763..3998942

Genome Context

<gbrowseImage1> name=IndicaChromosome10:3998763..4002372 source=RiceIndica10 preset=GeneLocation </gbrowseImage1>

Gene Structure

<gbrowseImage2> name=IndicaChromosome10:3998763..4002372 source=RiceIndica10 preset=GeneLocation </gbrowseImage2>

Coding Sequence

<cdnaseq>ATGCCGCCGACCTCAGTGAGCCCACCAAGAACAGCGCCGGGGCCGGCGAACCCGAGCCCGGCACACCCGTCCCGCGTGCGGGTGATCCACCCGGGCGGCGGGAAGCCCGGTGGGCCGGTGGTGTCCTGGATGCTGCGGGACCAGCGGCTCGCCGACAACTGGGCGCTCCTCCACGCCGCCGGCCTCGCCGCCGCCTCCGCGTCCCCGCTCGCCGTCGCGTTCGCGCTGTTCCCGAGGCCCTTCCTCCTCTCCGCCCGCCGCCGCCAGCTCGGGTTCCTCCTCCGCGGCCTCCGCCGCCTCGCCGCCGACGCCGCCGCCCGCCACCTCCCCTTCTTCCTCTTCACCGGTGGGCCCGCGGAGATCCCGGCGCTGGTGCGGCGCCTTGGTGCGTCGACGCTGGTCGCCGACTTCTCGCCGCTGCGGCCGGTGAGGGAGGCGCTCGACGCGGTGGTCGGCGACCTGCGGCGGGAGGCGCCCGGCGTGGCCGTGCACCAGGTGGACGCGCACAACGTGGTGCCTGTGTGGACGGCGTCGGCGAAGATGGAGTATTCAGCCAAGACCTTCAGAGGCAAGGTGAGCAAGGTGATGGATGAGTACCTTGTGGAGTTCCCTGAATTGCCGGCGGTGGTGCCATGGGACAGGGAGCAGCCGGAGGGGGTCGACTGGGACGCACTCATCGCCAGGGTTTGCAGTGAGGCGGAGAATGTGCCGGAGATTGACTGGTGTGAGCCTGGAGAGGAAGCAGCCATAGAGGCGCTTCTCGGCAGCAAGGATGGATTCCTGACGAAGAGGATCAAGAGCTATGAAACTGACCGGAATGATCCCACGAAACCACGGGCATTGTCTGGGCTTTCACCATACCTTCATTTTGGGCACATTTCGGCACACCGGTGTGCGCTCGAGGCAAAGAAATGCCGACATCTTAGTCCCAAGATGTTTGAAGTAACATGTGTTCTGAAACAGTCCGTCGATGCTTTCTTGGAGGAATTGGTTGTAAGGAGGGAATTAGCTGACAACTTCTGCTATTACCAACCTCAATATGATTCGCTGTCTGGTGCATGGGAATGGGCAAGGAAGACACTGATGGATCATGCTGCTGATAAAAGAGAGCATATCTATACGAGGGAACAGCTTGAGAATGCCAAAACACATGATCCTTTGTGGAATGCATCGCAGTTGGAGATGGTTCACCATGGAAAAATGCATGGATTCATGAGAATGTACTGGGCCAAAAAGATTCTAGAATGGACTAGTGGACCAGAAGAAGCACTTTCAACAGCAATTTATTTAAATGACAAGTATGAGATAGATGGCAGGGACCCCAGTGGTTACGTCGGATGTATGTGGTCCATATGTGGCCTCCATGATCAGGGTTGGAAGGAGCGTCCAGTATTTGGAAAGATACGTTACATGAATTACGCTGGCTGCAAGAGAAAATTCGATGTTGACGCTTACATTTCTTATGTCAAGAGATTAGCTGGTCAATCCAAGAAGAGGAACGCTGAGGAGTCTCCAAATCCTGTAGTCAAGCTTTCCAAGTCTCAGCACTAA</cdnaseq>

Protein Sequence

<aaseq>MPPTSVSPPRTAPGPANPSPAHPSRVRVIHPGGGKPGGPVVSWMLRDQRLADNWALLHAAGLAAASASPLAVAFALFPRPFLLSARRRQLGFLLRGLRRLAADAAARHLPFFLFTGGPAEIPALVRRLGASTLVADFSPLRPVREALDAVVGDLRREAPGVAVHQVDAHNVVPVWTASAKMEYSAKTFRGKVSKVMDEYLVEFPELPAVVPWDREQPEGVDWDALIARVCSEAENVPEIDWCEPGEEAAIEALLGSKDGFLTKRIKSYETDRNDPTKPRALSGLSPYLHFGHISAHRCALEAKKCRHLSPKMFEVTCVLKQSVDAFLEELVVRRELADNFCYYQPQYDSLSGAWEWARKTLMDHAADKREHIYTREQLENAKTHDPLWNASQLEMVHHGKMHGFMRMYWAKKILEWTSGPEEALSTAIYLNDKYEIDGRDPSGYVGCMWSICGLHDQGWKERPVFGKIRYMNYAGCKRKFDVDAYISYVKRLAGQSKKRNAEESPNPVVKLSKSQH</aaseq>

Gene Sequence

<dnaseqindica>1..346#481..629#749..945#1032..1272#1406..1593#1718..1754#1843..1901#2524..2605#3242..3313#3431..3610#ATGCCGCCGACCTCAGTGAGCCCACCAAGAACAGCGCCGGGGCCGGCGAACCCGAGCCCGGCACACCCGTCCCGCGTGCGGGTGATCCACCCGGGCGGCGGGAAGCCCGGTGGGCCGGTGGTGTCCTGGATGCTGCGGGACCAGCGGCTCGCCGACAACTGGGCGCTCCTCCACGCCGCCGGCCTCGCCGCCGCCTCCGCGTCCCCGCTCGCCGTCGCGTTCGCGCTGTTCCCGAGGCCCTTCCTCCTCTCCGCCCGCCGCCGCCAGCTCGGGTTCCTCCTCCGCGGCCTCCGCCGCCTCGCCGCCGACGCCGCCGCCCGCCACCTCCCCTTCTTCCTCTTCACCGGTACGCGCCCTTTTCTTTTTCTTTTTCTTTTTCTTTTTCTTTTTCTTTTTCTTTTGTCTCCATCCGTGACGATGACATGTGGGCCACCCCGTCTTGCGAAATGTGACGTGGCTTTTTCTCTGGCTCGCTGACAGGTGGGCCCGCGGAGATCCCGGCGCTGGTGCGGCGCCTTGGTGCGTCGACGCTGGTCGCCGACTTCTCGCCGCTGCGGCCGGTGAGGGAGGCGCTCGACGCGGTGGTCGGCGACCTGCGGCGGGAGGCGCCCGGCGTGGCCGTGCACCAGGTGAGCGTGGTGGCATTGCTGTTTGCATCAATCTTCCAAGAAAGTTGGGAATCTTTTTGGGGATGGATAATGAATTCGCCGGAGAATTTAGAGATTCTTGTGGAATTCTTCGAATGCAGGTGGACGCGCACAACGTGGTGCCTGTGTGGACGGCGTCGGCGAAGATGGAGTATTCAGCCAAGACCTTCAGAGGCAAGGTGAGCAAGGTGATGGATGAGTACCTTGTGGAGTTCCCTGAATTGCCGGCGGTGGTGCCATGGGACAGGGAGCAGCCGGAGGGGGTCGACTGGGACGCACTCATCGCCAGGGTTTGCAGGTGCGGATGATAATTCTAAGGTGTATTGGGTGGTAATTTTGTTTGTGTAGATATGGATGACTATTGATTCTTGGTTGTTTGAGCAGTGAGGCGGAGAATGTGCCGGAGATTGACTGGTGTGAGCCTGGAGAGGAAGCAGCCATAGAGGCGCTTCTCGGCAGCAAGGATGGATTCCTGACGAAGAGGATCAAGAGCTATGAAACTGACCGGAATGATCCCACGAAACCACGGGCATTGTCTGGGCTTTCACCATACCTTCATTTTGGGCACATTTCGGCACACCGGTGTGCGCTCGAGGCAAAGAAATGCCGACATCTTAGTCCCAAGGTGCTGTTCTTTAACTGATTTGTTATGATTAAAAGAGTTATGATCCTCTTGCAATGTAATAAATTGTTAGATGGCATTGTTTTTCTTTACCGTGAACTGGCTAGAATTCTTAGTGATGTTGTTTACCTAATAGATGTTTGAAGTAACATGTGTTCTGAAACAGTCCGTCGATGCTTTCTTGGAGGAATTGGTTGTAAGGAGGGAATTAGCTGACAACTTCTGCTATTACCAACCTCAATATGATTCGCTGTCTGGTGCATGGGAATGGGCAAGGAAGACACTGATGGATCATGCTGCTGATAAAAGAGAGCATATCTATACGTGAGTAAGTTGCCCTTTATAATTTATTGTCACAATTTTAACCAAATTATCTTCCTGACGATGTTAAGGTAAAAGATCTTCGCTCTAATTGGTTATTTGTTAATTGTCATTTTGTTTTGGCTAGGAGGGAACAGCTTGAGAATGCCAAAACACATGATCCTGTAAGTGCTATTGGACGTGGTGTACTCTGTTGCTGATATTGAAGTTACTCTAACACACTGACTTATTTTTTTTCTAAATGATTATCAGTTGTGGAATGCATCGCAGTTGGAGATGGTTCACCATGGAAAAATGCATGGATTCATGAGGTAATATATTATGACCAGACTCTTACAAAATCACGCAATTATAAAATGTTTATTGAACAGTTTTTTTTTTATGAAACTGCTTGTTATATTTCTCCTGTACCCATGGCACATTCTAGTTAGTTGCCCATAACCTATTGGCCCACTTGTTGACAACATATGGTTATTTTACCCATCATACTGATGGTGTGGTGCTAACCTAAAGGCATTGGATTGCCCCCACCCCATCTTTGCTGACATAACTGATTAGTTTGCTTTGTTGGATAGATGGGAATTTGCTGACGTTGTGGTTTACTTTATCCTATGTCAGAAAATATGAAGTTATTTGAAAAAAAGCATTCCTTAAAAAATTAGTTTTCTGTAGAGTTTGTGTAGTTCCAATAAATTTATGATGATCTATGTGATATGTCTGGTAGCAAGCCTTTGGTGCACATAATTCTCTTTGATTCTGGGCAAACCTTTTACACTATTTTTGTTTAACTTTTGTTTTGGATCTGGAAAGAAAGAAAAGTAAGTTGTTTTGGCGAACATCAAAGAATGATGTTATATCTAATTGATTCTTAGTTCTGAAGGTAACAGTGCCTGTAAGGACTTTTTCCTTTCCTAATGTAGTAGTTGTCTGTAGAATGTACTGGGCCAAAAAGATTCTAGAATGGACTAGTGGACCAGAAGAAGCACTTTCAACAGCAATTTATTTAAATGACAAGGTAAGACCTATATACACATGTTTGGGAAATACAGTTGTGTTATTTTGAATTTGTCCTTTTTATAGTTTTGCTAGTTGTAGTTAAAATAGCTATATTTCAACACATGGAACATGATAAAGAAACATGGAACATGATAAAGAAACTGCTCACATGAAAAATTGTAATTGAATAGCAACTTGGAAGAGTCTGCCCATGCTTAAATTAGTTCCTGCGCCGATAACCGAAAAGTTGGAGTCACATTTATCAAATTAAGAAATATATAATTTGACATTCTTTTCATGTAAGGCAGAAAATTGTATGGTTGGTTCTCTTTTCATTATCTTATCTTCCCTTAAGTTAAAAACATCATCCTTCTAGGGACAACCAGACAATAAATCAGCTTCACGGTCGCCTCGGATAAGCTGGACTATCCTTTTTCTTGGTTACCTGTCAGAAGAAAGATACAAAACAGTAACTGGGGAAATAAATTTTCAGGAATGTGAAATTGCTCGAAGATATTTTCATAGTTGAACCTACAATTCTTTCCCCAGCTGGATTGTTCTCGTTCTTTAATAGGAGTAGTTGTTTGCATTGAAGTACTTCTACGGATTTTATTTATGCTTTTCAACAAAGTCTTACAAATCAATCTTGTGGCAGTATGAGATAGATGGCAGGGACCCCAGTGGTTACGTCGGATGTATGTGGTCCATATGTGGCCTCCATGATCAGGTCATTGTGTTATCACTTCTCACTTCACAGGGAAAAACAATTTTGCTTTTCACAAGCATTAGATTGTTGGTGACATTCTAGAAGCGAGTATTCCTTACACCACTGCTGTTTTCTCAGGGTTGGAAGGAGCGTCCAGTATTTGGAAAGATACGTTACATGAATTACGCTGGCTGCAAGAGAAAATTCGATGTTGACGCTTACATTTCTTATGTCAAGAGATTAGCTGGTCAATCCAAGAAGAGGAACGCTGAGGAGTCTCCAAATCCTGTAGTCAAGCTTTCCAAGTCTCAGCACTAA</dnaseqindica>

External Link(s)

EnsemblPlants:BGIOSGA032246

Retrieved from "https://ngdc.cncb.ac.cn/ricewiki/index.php?title=BGIOSGA032246&oldid=31468"