Os11g0103400

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Revision as of 08:56, 21 June 2012 by 127.0.0.1 (talk) (Created page with "{{JaponicaGene| GeneName = Os11g0103400| Description = Zinc finger, RING-type domain containing protein| Version = NM_001072055.1 GI:115483722 GeneID:4349539| Length = 235...")
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Gene Name

Os11g0103400

Description

Zinc finger, RING-type domain containing protein

Version

NM_001072055.1 GI:115483722 GeneID:4349539

Length

2350 bp

Definition

Oryza sativa Japonica Group Os11g0103400, complete gene.

Source

Oryza sativa Japonica Group

 ORGANISM  Oryza sativa Japonica Group
           Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
           Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; BEP
           clade; Ehrhartoideae; Oryzeae; Oryza.
Chromosome

Chromosome 11

Location

Chromosome 11:135610..137959

Sequence Coding Region

135610..136296,136736..137275,137367..137518,137683..137959

Expression

GEO Profiles:Os11g0103400

Genome Context

<gbrowseImage1> name=NC_008404:135610..137959 source=RiceChromosome11 preset=GeneLocation </gbrowseImage1>

Gene Structure

<gbrowseImage2> name=NC_008404:135610..137959 source=RiceChromosome11 preset=GeneLocation </gbrowseImage2>

Coding Sequence

<cdnaseq>atgtccgccgccgacgacctcgccgccctccaccaccaggtctcgctcgcctcctccgccgccctctccgcctccgaccacgacctcgccttccacctccagctctccgaggccatccaggcctccctatcctccaatgccgccgccccatctcaccccgcgccaccgccaccgccaccggaggagccttccgacgcctcttgcgccctggcagtccacgccgccgacctcgcgcgagccgagcaggaccaccgcgatgcccaggcctgccgcgcctaccacgcccgggccgccgcctccgtccgcgtcgccgcgcacaacgccctcttcgcgcgcgacctcgccgccatcccggaggacaagtgggcccacgacggcgactacttcgagcggcccctccccctggaaggaggcggcgcgctcttccgcgtgctgttcaagggcatggcgagcagggaggtggtggggccgcgtgaccgtgaccctggcgtcggggtgctcgccgtcgccatctgcgggccaaggggggaggtggtgctccggatacacaagcccgtgcaagcgcaggcgcagcaagggcggatgatgctggaggcgatggcgctggtggaaggcctcaatgcggcgctcgccctcggcatccggaccctcaacgtcctcactgacaacaagccgctgcacaaccatatgagtggaatatggcgcccaagacagaagaggcttgtggatttgatcaatgaggctttctcagcaaaacagaaatttgagcaatctgagatcctgtgtgttgcacgaacccaagtcaactatgtcacaaaattagcaacagattctctgcatactcaaattgccaaagctgctgttgtgagtgctggcaaggagaaaaaagagaactgcaccatctgcttggaagacactgacgtctctaagattcatgcagttgaaggctgcgcgcatcgcttttgcttctcctgcatgaaggagcatgtcaaagttaagctacttcatgggatgctcccagcttgcccacaagatggttgcactaccaagctaaactgtggagggttcaaagatgttcctatctccacggttattaccgatcatggtgcagcgtatcagggaagcacaaattcctccaactcacaagatttattgcccatatcccaagtgctcagccttgatgtccatgagagaactgatacatccaatgcaagaatcatcctcaaaatgacttgttatgactacaagaggaggtaccgccatgctcgtctagaagatgcctatctacagaaccttgcacagcagcggttatggcgtcaatgtatccgatgcaagcacatgattgaactagcagagggttgctaccatatgacttgcgtgtgcggctatgagttctgctacacctgtggaaaagaatggaaggagaagaaagcgacctgctcttgtccactgtgggatgaacgcaacattatccgtgatgatcctcaaggcaatgctgctatccatgatgatcctgaagatgaatatgatgactactatgatgaggacgaaaataattactatgttggagaaggccttcagtacaatgtggattaccatcgtcagtatgatggaggggaccgtcaccatggccacttctatcaatacaatcgctag</cdnaseq>

Protein Sequence

<aaseq>MSAADDLAALHHQVSLASSAALSASDHDLAFHLQLSEAIQASLS SNAAAPSHPAPPPPPPEEPSDASCALAVHAADLARAEQDHRDAQACRAYHARAAASVR VAAHNALFARDLAAIPEDKWAHDGDYFERPLPLEGGGALFRVLFKGMASREVVGPRDR DPGVGVLAVAICGPRGEVVLRIHKPVQAQAQQGRMMLEAMALVEGLNAALALGIRTLN VLTDNKPLHNHMSGIWRPRQKRLVDLINEAFSAKQKFEQSEILCVARTQVNYVTKLAT DSLHTQIAKAAVVSAGKEKKENCTICLEDTDVSKIHAVEGCAHRFCFSCMKEHVKVKL LHGMLPACPQDGCTTKLNCGGFKDVPISTVITDHGAAYQGSTNSSNSQDLLPISQVLS LDVHERTDTSNARIILKMTCYDYKRRYRHARLEDAYLQNLAQQRLWRQCIRCKHMIEL AEGCYHMTCVCGYEFCYTCGKEWKEKKATCSCPLWDERNIIRDDPQGNAAIHDDPEDE YDDYYDEDENNYYVGEGLQYNVDYHRQYDGGDRHHGHFYQYNR</aaseq>

Gene Sequence

<dnaseqindica>1..687#1127..1666#1758..1909#2074..2350#atgtccgccgccgacgacctcgccgccctccaccaccaggtctcgctcgcctcctccgccgccctctccgcctccgaccacgacctcgccttccacctccagctctccgaggccatccaggcctccctatcctccaatgccgccgccccatctcaccccgcgccaccgccaccgccaccggaggagccttccgacgcctcttgcgccctggcagtccacgccgccgacctcgcgcgagccgagcaggaccaccgcgatgcccaggcctgccgcgcctaccacgcccgggccgccgcctccgtccgcgtcgccgcgcacaacgccctcttcgcgcgcgacctcgccgccatcccggaggacaagtgggcccacgacggcgactacttcgagcggcccctccccctggaaggaggcggcgcgctcttccgcgtgctgttcaagggcatggcgagcagggaggtggtggggccgcgtgaccgtgaccctggcgtcggggtgctcgccgtcgccatctgcgggccaaggggggaggtggtgctccggatacacaagcccgtgcaagcgcaggcgcagcaagggcggatgatgctggaggcgatggcgctggtggaaggcctcaatgcggcgctcgccctcggcatccggaccctcaacgtcctcactgacaacaagccgctgcacaaccatgtactgtagtaaatcataggaaaaaaatacttcttttttcacccttttgaggtatatttttgctcttacatgtaccatatttttttaaacttttttcttttgttttttattttcctatgcgtaagggtaaattgaacaaattatatagattatgcataggaatgtgacatggcatgtccatgtagcgattttggtgggaccaaggactatattagcccacatgataaatttaaaggacttgtttggacaatatgaaagattaaggactaaaatgatccaggagcgaaactttagggaccatattagctattctcccattattcaattatttttcgtctatcactggtcttgttatgatgtgcactacatgattgttgatagatacaatacatacaatctggtgtttatttcctaatgctgttgggaattgggattgcagatgagtggaatatggcgcccaagacagaagaggcttgtggatttgatcaatgaggctttctcagcaaaacagaaatttgagcaatctgagatcctgtgtgttgcacgaacccaagtcaactatgtcacaaaattagcaacagattctctgcatactcaaattgccaaagctgctgttgtgagtgctggcaaggagaaaaaagagaactgcaccatctgcttggaagacactgacgtctctaagattcatgcagttgaaggctgcgcgcatcgcttttgcttctcctgcatgaaggagcatgtcaaagttaagctacttcatgggatgctcccagcttgcccacaagatggttgcactaccaagctaaactgtggagggttcaaagatgttcctatctccacggttattaccgatcatggtgcagcgtatcagggaagcacaaattcctccaactcacaagatttattgcccatatcccaagtgctcagccttgatgtccatgagagaactgatacatccaatgcaagaatcatcctcaaagtacactcttgttgatgctgccacattgaggaagtgtgtcaaatgcagtggctctttctgcattagctgtaaggtcccatggcatcatcagatgacttgttatgactacaagaggaggtaccgccatgctcgtctagaagatgcctatctacagaaccttgcacagcagcggttatggcgtcaatgtatccgatgcaagcacatgattgaactagcagagggttgctaccatatgacttgcgtgtaggtgttttctcctcaaccttgagtctgccatcctcatattattattacctttactaacaattcaacattgatatgcctccaaagtctttgatacttcctctcatgtgctaatgctcagattcacttgaacgtttcattcatcctgttcatgcttgttgcaggtgcggctatgagttctgctacacctgtggaaaagaatggaaggagaagaaagcgacctgctcttgtccactgtgggatgaacgcaacattatccgtgatgatcctcaaggcaatgctgctatccatgatgatcctgaagatgaatatgatgactactatgatgaggacgaaaataattactatgttggagaaggccttcagtacaatgtggattaccatcgtcagtatgatggaggggaccgtcaccatggccacttctatcaatacaatcgctag</dnaseqindica>

External Link(s)

NCBI Gene:Os11g0103400, RefSeq:Os11g0103400