Os11g0109200

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Revision as of 08:57, 21 June 2012 by 127.0.0.1 (talk) (Created page with "{{JaponicaGene| GeneName = Os11g0109200| Description = C-5 cytosine-specific DNA methylase family protein| Version = NM_001189378.1 GI:297727886 GeneID:9270803| Length = 4...")
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Gene Name

Os11g0109200

Description

C-5 cytosine-specific DNA methylase family protein

Version

NM_001189378.1 GI:297727886 GeneID:9270803

Length

4216 bp

Definition

Oryza sativa Japonica Group Os11g0109200, complete gene.

Source

Oryza sativa Japonica Group

 ORGANISM  Oryza sativa Japonica Group
           Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
           Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; BEP
           clade; Ehrhartoideae; Oryzeae; Oryza.
Chromosome

Chromosome 11

Location

Chromosome 11:427376..431591

Sequence Coding Region

427376..427408,427589..427694,427777..427823,427907..428065,429018..429092
,429379..429764,430458..430943,431105..431118,431476..431591

Expression

GEO Profiles:Os11g0109200

Genome Context

<gbrowseImage1> name=NC_008404:427376..431591 source=RiceChromosome11 preset=GeneLocation </gbrowseImage1>

Gene Structure

<gbrowseImage2> name=NC_008404:427376..431591 source=RiceChromosome11 preset=GeneLocation </gbrowseImage2>

Coding Sequence

<cdnaseq>atgaggatagcgagttcgagtgggatactgatggatgctaatgggaaggccaatggatcagcaccatcagctttggttgcttactttttgggaatgggtttctcgagagagatggtcttcagagctatcaaggagattggggacacagattcggagcaaattcttgagttacttctcacttatcaggcgataggcagtgacccttcagtgggtaacagctctcattctgcctgtgacccccagattcttgaagaagaagatgaggaggaggatgttaattgggacgaggatgatactgttgacaattttgatagggctacttactctgatggttctggtgatgaggactttttacaagagatgtccgagaaagatgagaaaatcaagtccttagtcagcatgggttttcctgaagatgaagatacagagtttagttcctttggaggaagaaagaaaacaaaattaatagatggaagcaagaaaaaaagagaacggtatagaagtagaccacaatggaatcaagtgccatttgacggcagccatgaagagccaatgcctcttccaaattcaatggtgggattcagcttgcccaatgacgggttaaggtcagtccacagaaaccttcctgaccaggctcttggaccaccattcttttactatgaaaacgtggccctagctccaaaaggtgtatggacgaccatctcaagattcttgtatgacatttatcctgagttcgtatattccaaatacttctgtgctgctgctaggaagaggggttacatccataacttgccgattaagaacaggaattataccaggggagttagcaggacagcgagatatagagctcttgggaattcattccaagttgatacagttgcctaccacctctctgtgctgagggacatattccctaatggcatgaacgtcttgtccttgttttctggtattggtggagcagaagtagctctccacaggcttggaatctgtatgaagacagtggtcttagtcgaaatatcagaggtaaacatgacgttgctgaggagttggtgggaccagacccaaactggcacgctgattgaaatcgcagatgttcaaaatcttactgctgaaagaattgaactattcatcagaagatttggtggctttgacctggtgatcgggggcagcccgtgcaacaacctcgctggtagcaacagataccaccgtgatggcttggagggcaagcactcagcactattctatcactactacagaatcttggattctgtaaagactattatggctagcatttttggtgcgaaaggaaagttgtttcgccatgttcgcaaggcccttctgttgaaacaatcctcctccttgacactgaaaactgaacaagatccttccaataacagtgataaggattccatggacaaataa</cdnaseq>

Protein Sequence

<aaseq>MRIASSSGILMDANGKANGSAPSALVAYFLGMGFSREMVFRAIK EIGDTDSEQILELLLTYQAIGSDPSVGNSSHSACDPQILEEEDEEEDVNWDEDDTVDN FDRATYSDGSGDEDFLQEMSEKDEKIKSLVSMGFPEDEDTEFSSFGGRKKTKLIDGSK KKRERYRSRPQWNQVPFDGSHEEPMPLPNSMVGFSLPNDGLRSVHRNLPDQALGPPFF YYENVALAPKGVWTTISRFLYDIYPEFVYSKYFCAAARKRGYIHNLPIKNRNYTRGVS RTARYRALGNSFQVDTVAYHLSVLRDIFPNGMNVLSLFSGIGGAEVALHRLGICMKTV VLVEISEVNMTLLRSWWDQTQTGTLIEIADVQNLTAERIELFIRRFGGFDLVIGGSPC NNLAGSNRYHRDGLEGKHSALFYHYYRILDSVKTIMASIFGAKGKLFRHVRKALLLKQ SSSLTLKTEQDPSNNSDKDSMDK</aaseq>

Gene Sequence

<dnaseqindica>1..33#214..319#402..448#532..690#1643..1717#2004..2389#3083..3568#3730..3743#4101..4216#atgaggatagcgagttcgagtgggatactgatggtgagtctgaggccacgtttgctccagccttttcgaacacggatgcgcctggtccgtccacgagacccaggctgcaagttggagatataagtctagttgaacacacacgagctggtcatttgttttaaccatgatattaccttactataattataatcataatatggtgtttgtctaaaggatgctaatgggaaggccaatggatcagcaccatcagctttggttgcttactttttgggaatgggtttctcgagagagatggtcttcagagctatcaaggagattggtaatgataacaataatacatttcctcatttgcttaggttgcattttgcatcttttgtttcaactgttgccgtttctttcaggggacacagattcggagcaaattcttgagttacttctcacttatcaggtatttgctcacgtggttgcatcactttgtttattatctaatgctctattgtacaagtcatgttacgtaacactgtaatgcaggcgataggcagtgacccttcagtgggtaacagctctcattctgcctgtgacccccagattcttgaagaagaagatgaggaggaggatgttaattgggacgaggatgatactgttgacaattttgatagggctacttactctgatggttctggtgatgaggtattcacatgactccctccttggtcattatatatttatatcagacatgatcgaacctttgttacacttgtttcatgccaagcacacattcccttttagtgcttgtctaaattatctattggtcttggtccaataaattggaaggttttgtgacttaagttatgcttcacttttatttagtaaacaagtgtacatgcttacctgtactgcaatgctgtagttttttgggttatctataaaacaatacctgttcctatagggttgttaaaggatctttgttgatcctgctcttgcttctatgtttctttagctggcatttttgtatggtgcctttatagtgagagagatagcagaactactacagaaccatcaaagagatgatcatatacttctacaaggtcgtattcaaaccaagcaatgatgaaagatagtctactgaatgcctataattgaatggttgcaagttaagaccaccagacagaacaatgataaccactggctacatctgaaaacataatagacaacaaaaaatggaactgaaatgatgcctatgagagcttaggtaatctgtgctgggcatttatccatgtgttgatgattgataagctgtactccccctcctttttgtggtctaacatgctttattgtttcaccattttttaaatagttttactactttttcattacatctttagtatgagtttcctctaactttaatcctcaaaataagttcctctatagtatggtagtatctgtttgcatggagttgtaagacgcaacaacaaatttgacacagaaggataatcgtatattttgttgcagtaaatttgggtgtacatgcatatatgtgatgcctgcattagttgctttgttgggaggctatttcagactgcaattcatgagtgagatgtagcaaatgttttcagtctgcttgtaatgtgctttgttgcaggactttttacaagagatgtccgagaaagatgagaaaatcaagtccttagtcagcatgggttttcctgaagatgaagtaatgagggctattattagatgcggtatacctctattgaagttgctgctttgacagtaaggagccttatactgcctatgctgggttaaaatttggcaggtctggatgcgtctgtagatttgttggttgagtcaatctatgcaccagcgactgcaggaaatgtttgttttacaaacttatctgactatgaagtatgggtaccttgtgattatagagcatctgaatggtgaaattgttttcatttctttaatgtaatgccactggcataatgtttatttttgtgcaggatacagagtttagttcctttggaggaagaaagaaaacaaaattaatagatggaagcaagaaaaaaagagaacggtatagaagtagaccacaatggaatcaagtgccatttgacggcagccatgaagagccaatgcctcttccaaattcaatggtgggattcagcttgcccaatgacgggttaaggtcagtccacagaaaccttcctgaccaggctcttggaccaccattcttttactatgaaaacgtggccctagctccaaaaggtgtatggacgaccatctcaagattcttgtatgacatttatcctgagttcgtatattccaaatacttctgtgctgctgctaggaagaggggttacatccataacttgccgattaagaacaggtcacctgttcttcccattcccccaaagacaatatctgaagcctttccttctactaagatgtggtggcccttttgggatccaagaaggcagttcaactgcttgcaaacttgtgtggcaagcgcaaagcatacagaacggatacgatgtgctcttggtagattcggcgatgcactacctccagcagttcagaagagtgtcttggaagaatgtaggaagtggaaccttgtctaggttggaaagaacaaggttgctactctagagcctgatgagatggaattcctattgggataccctaggatgttggataagtctttgtggtccttggtcgtgattcttctttttgcttttgggtagtttcaccttttcaggacagcatctaccctttagcatatttttcagttgctaggacagctacggttagtaggacagcagcagttagcatctcctttatgcctcctttatgctttattcagtttggatgccctctaggacagcatcccattcaaatttcgaattttagactaggagggtgcagcaataggctagtagccagctatggctatatatatgtatccaacctctctcgggtaggtatggcttttgtgttttgtgaatgaagaaaaccagaaaattgccccatctcgagtgccatcctcttctcaatgagagtaaccattgaaattctaacataggaattataccaggggagttagcaggacagcgagatatagagctcttgggaattcattccaagttgatacagttgcctaccacctctctgtgctgagggacatattccctaatggcatgaacgtcttgtccttgttttctggtattggtggagcagaagtagctctccacaggcttggaatctgtatgaagacagtggtcttagtcgaaatatcagaggtaaacatgacgttgctgaggagttggtgggaccagacccaaactggcacgctgattgaaatcgcagatgttcaaaatcttactgctgaaagaattgaactattcatcagaagatttggtggctttgacctggtgatcgggggcagcccgtgcaacaacctcgctggtagcaacagataccaccgtgatggcttggagggcaagcactcagcactattctatcactactacagaatcttggattctgtaaagactattatggctagcatgtaagctagcccattaacgaactctgtgaattattgttgctaatgaaattggaacctgatggttgaccttctttcacaaggtttctcttgccatggctcaatacgttctactaatttaccccaagtgcaaaatgctccttccattttgataatgcttgcagttttggtgcgaaaggtatgaaaattacatctgacaacatgtctctcatttttgtactactattatgtatacaaactgaagattgccatggaggaataggctaatgctattaaggggctttgtttgattactacaagctgaattatgaacatgatttgagcaccatacgctagattcatctctgcttttgctgaagttgaaattctgcaacctgaattgtacctgcatttctataataacctttatttattttgactgtgcctgaatgtctatagcttgcacctccaatgcaagtacatttccctttttcctgttgatatgcacaattcacttgatatatctttactataacaaaatcttgaatctttgaaggaaagttgtttcgccatgttcgcaaggcccttctgttgaaacaatcctcctccttgacactgaaaactgaacaagatccttccaataacagtgataaggattccatggacaaataa</dnaseqindica>

External Link(s)

NCBI Gene:Os11g0109200, RefSeq:Os11g0109200