Os09g0103500

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Revision as of 07:16, 21 June 2012 by 127.0.0.1 (talk) (Created page with "{{JaponicaGene| GeneName = Os09g0103500| Description = Pseudouridine synthase domain containing protein| Version = NM_001069091.1 GI:115477921 GeneID:4346373| Length = 574...")
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Gene Name

Os09g0103500

Description

Pseudouridine synthase domain containing protein

Version

NM_001069091.1 GI:115477921 GeneID:4346373

Length

5748 bp

Definition

Oryza sativa Japonica Group Os09g0103500, complete gene.

Source

Oryza sativa Japonica Group

 ORGANISM  Oryza sativa Japonica Group
           Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
           Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; BEP
           clade; Ehrhartoideae; Oryzeae; Oryza.
Chromosome

Chromosome 9

Location

Chromosome 9:383884..389631

Sequence Coding Region

383921..384250,384407..384478,385514..385654,385737..385784,385863..385940
,386425..386538,386661..386753,387779..387890,388959..389005
,389135..389446

Expression

GEO Profiles:Os09g0103500

Genome Context

<gbrowseImage1> name=NC_008402:383884..389631 source=RiceChromosome09 preset=GeneLocation </gbrowseImage1>

Gene Structure

<gbrowseImage2> name=NC_008402:383884..389631 source=RiceChromosome09 preset=GeneLocation </gbrowseImage2>

Coding Sequence

<cdnaseq>atggcggcgctcctctatctccggaggcgggccgcggcggcggcgctcgccggcgtagcgccaaagccccaatggctggccacggcagcgaggcgcggtgctctagttagcggagacgacggtggagagacaggcgagaggggcaagagcccgtggttgcagctcccgcccttcgcgccgctcgacgccgccgccgctgcgagagccatctctcgaggaggtggcgaaggaggagatggagaacagggagctaccgcgatcaagtgggtccgtcggtgctgccccgacctgccgacctcgctggtgcagaagctgttccgtctccgcaaagttaagaagaacgttgttactgctgagatctcatcggctgatgctagtgctgagcaacatcggttgagaagggtttcagcaaaagatcaattaatgcctggtgatatcctctttctgcctgttaatctcaaagaatcttcggttgctgagaagactaagaaatttgataacaggaatgagattaattttctgcgtggccttgagatttacaaggatgaagccatcatcgtggtcaacaaaccccctggaatgccggttcagggcggtgttggcattaaaaacagtatagatgtattggcctccatgtttgaagaaaattcttctgaagcacctcgtttggttcataggcttgatagagattgtagcggcatccttgttctgggtagaaatcaacttagcacttcaatgttgcatgcaatatttcgtgagaaaactgctgatgctttagctgatggtactcaacatgtactgcaaagaaaatatgttgctcttgtaattggaacacctagacatcccaagggtttattgtcagctccacttgcaaagattctattacaagatggtaagtctgagcgtctgactattagggccagttcaaatgctgcttctgttcaggatgctttgacagagtacagagtgattgaatcttgcccccaagggtacacttggctagaactatttcctcgtactggaagaaagcatcagaggttcttggaaccccaattgttggggattacaagtatggacggcaagcgcatcagaagtggatgcctcttcccctgccacggacaattgatgaggaactgctcaggaaaaggaagcttccctttgggcttgttgtgggtggcggaagcatcgctgaggagcaacctcagcttcatctacactgcaagcaaatggttcttcctgatgtctcagtggctcttcataggctgcagtcttcagacgttaatcctgatttctcagatcttgagaagctcaactttgttgctccactgccgttgcatatgcggttga</cdnaseq>

Protein Sequence

<aaseq>MAALLYLRRRAAAAALAGVAPKPQWLATAARRGALVSGDDGGET GERGKSPWLQLPPFAPLDAAAAARAISRGGGEGGDGEQGATAIKWVRRCCPDLPTSLV QKLFRLRKVKKNVVTAEISSADASAEQHRLRRVSAKDQLMPGDILFLPVNLKESSVAE KTKKFDNRNEINFLRGLEIYKDEAIIVVNKPPGMPVQGGVGIKNSIDVLASMFEENSS EAPRLVHRLDRDCSGILVLGRNQLSTSMLHAIFREKTADALADGTQHVLQRKYVALVI GTPRHPKGLLSAPLAKILLQDGKSERLTIRASSNAASVQDALTEYRVIESCPQGYTWL ELFPRTGRKHQRFLEPQLLGITSMDGKRIRSGCLFPCHGQLMRNCSGKGSFPLGLLWV AEASLRSNLSFIYTASKWFFLMSQWLFIGCSLQTLILISQILRSSTLLLHCRCICG</aaseq>

Gene Sequence

<dnaseqindica>38..367#524..595#1631..1771#1854..1901#1980..2057#2542..2655#2778..2870#3896..4007#5076..5122#5252..5563#ccgatccaacaaacgactaagacggacttttgcttcgatggcggcgctcctctatctccggaggcgggccgcggcggcggcgctcgccggcgtagcgccaaagccccaatggctggccacggcagcgaggcgcggtgctctagttagcggagacgacggtggagagacaggcgagaggggcaagagcccgtggttgcagctcccgcccttcgcgccgctcgacgccgccgccgctgcgagagccatctctcgaggaggtggcgaaggaggagatggagaacagggagctaccgcgatcaagtgggtccgtcggtgctgccccgacctgccgacctcgctggtgcagaagctgttccgtctccgcaaagtgcgcaccactcgttcgaacaaatgccccgctacctttctctctctgtgtttttttaccatatgttgtttgctattctcttgatttctaacaagtttcaacatctttctaagagcaaagatgaaactaatcgatgctgtgcctcaaccgtggcaggttaagaagaacgttgttactgctgagatctcatcggctgatgctagtgctgagcaacatcggttgagaagggtaatgaaataatgaacatgataagtgaatgtgaagtgcctcacagactgaatccttatcctttagatgctggcttgttaagtgagagaacaggttctaagcttgtctgcgacatgaccagataataagttaatgaaatcaatcggtgatattggctagatgttttctctgtaaaagctgagtttatttcaccttctgttttttttttcttgtacttctgccattatcatgaccacatactaactaaatcctctttgctatatggtttggttggtctcgtaagtttaggcaagttcacaaaacttcacttttctctttcttacctcatcattcctggtttcctacaatgtggtatcttcagtatatcttcatgaagcgatatcacattgtcagatgccacaaggcccacatcgttctgaacataaccatcctggacaaaacaaaaacattgtaacaccaaaactagttgcttgagaacaatgacggatccaggaatttctttgagcctgggcaaacctaataagagataaagactatatacacaaaaccgtataactgataacttcatagatcatttatcaaagacataagtgaagttgggtgtcaccgagttatcgtttatcagtgagatgatggttgtttattgtcaatgagttagactatgaagcaagtattacttgagaaaagaaagatagacatgcttagagttgtgttgctttggctttatggttacagacatgatggcttggccctttctttgcttgtatgttggctgatcatctaattaacctccatttgaaccaacgaagcatggtaattaggtaaacaattaacaagtaatatgctgcttatgcaatggagcaatgtgttgctgtgtgcatagagcccgggcacctgcccatgctggccggaccctggccccgctactgcttgagaatatatagagcttgattttcttgttgacattatagagcatggcattttttacagttctgtgtttttctcttgcagtatgtgacttatttttgttttaaggtttcagcaaaagatcaattaatgcctggtgatatcctctttctgcctgttaatctcaaagaatcttcggttgctgagaagactaagaaatttgataacaggaatgagattaattttctgcgtggccttgagatttacaaggtgttagtttattagacttttcaaaagtactttaattgttttggatggtaaatgatcccctttggtgttttaaaactttcaggatgaagccatcatcgtggtcaacaaaccccctggaatgccggttcaggtaggtatctttgtatacgtgtattccactaaatttttcagtgcctagttttgaacttttttcctctctgttctgaagggcggtgttggcattaaaaacagtatagatgtattggcctccatgtttgaagaaaattcttctgaagcacctcgtttggtgagttcactactttctgtttgtgagacacatggttcctagaactcagtatatgcgtgtttggtttgtgtactcggggttctaccccttctttcttcttcttaatataatggtacgtggatctcctgcgtattcaaggaaaaaaaaagaacttagtcacttgtagtgcacattttaaacatggaaattgtcgtgcagacctcctataccacattcatttgaaaaagagtaatttcataaaactgcaagtattttggcaaaactttcaagttgctgcaccttttacaaggcaagtacacttttctccaatgatagcttccgattttatcatgtaaactaagattacatgtggtcttgactcttcagaagtagcatagtctcctaattattcaagcactcattttactcttggtgcctcagcaacagcaagttagtgctgtattggctgaattataagattgtttgtgctgatgtgcttcaccaggttcataggcttgatagagattgtagcggcatccttgttctgggtagaaatcaacttagcacttcaatgttgcatgcaatatttcgtgagaaaactgctgatgctttagctgatgtaagttcaatttacagtctgtttataataattatgttcaatatttgcacatttttatgacctgataccctacaaggctattatctacatacttataccgtgatcatgtgttttatgtcaagggtactcaacatgtactgcaaagaaaatatgttgctcttgtaattggaacacctagacatcccaagggtttattgtcagctccacttgcaaaggtttgttagaatatgcattatagttcacttccgttctatttatcaccagtctttatagttaagaaaggtacacacttcaggtgcaagagatgcacaaaaaaatctcttgagatacaatgccataaagtagtatatactatctggaacttaatgcggcaaatgtgtttagctggaccagcatttttttataagcaataaactaattgataccaccagcaaccggccaagctactgaactcttttaagtgatggcttgacaaaatcgcatgcctgtctaatggatattgagaaagtttggtgatcacatattgtgattacatacatttcatggagatttgaatttcaaaggtatgaaaatcatcaaaaccttgggcaacccttgttgaagctggcaatttccaccttgttacaagcaaagtttctatggaatttgactaatagagcattaataacacaaattttcatgcagacttgttctgttttagactggctaatagccgctgcagaatcacttactgatagtcttggattcccaacgaacaatgatacttagccaaactacaatatgatgatgactgtatgagtatctgtatcatatgcatatcatatatatatgacgatactctgatctcagatcccatgatcactcatttagatatctagtaaaagctcaaacaaaaagagatcaacccaccacttatactcctaccaatgtcttatatttactaccatgacattttatgtaatcttattatctaattctgtcgtaatatctctccacatctttcttactgccaaatacatatatatactcagtgaatctgttatctccacgtattggtgcaacatagccagtgaaaaatgatcacatatgattttgttctatttttatgagaacgcgctgttattttcattccaatgtagtctcttcatctactatgtctttccagctcagcacagttaatctcattttcagatatagtttctccattcatacttcattgggatgttcttcttttttgtagattctattacaagatggtaagtctgagcgtctgactattagggccagttcaaatgctgcttctgttcaggatgctttgacagagtacagagtgattgaatcttgcccccaaggtaagcaagaaataatgttctgttaaatgctaatatttttcccttagcaaaatcgataactcatttgctttttagttcaagatcagcagtgcatctgaacagataatatactgacattagcacaaattcaaaccagtaatattgggtgaccaagtctgtcttgttaaaatatgggaggaatagataacactactcccttgcaaaaaaaaagaggaagaatgaaaagatgacactatccagatattaatgttcatgatacctttggatgtggtgaaaaaactagacttgggagttaggatggcatacatagcctatattttgtgctccctccgtcccactgaacaaggcgcggtcaaacttggcatggtctccaaaactattttttgacttgaaatttctcatatactacatattggtagcaacaaaatcataatcataagaaagcaaattcaaataccaatccaatgatattattttcatcaaataaaatttaatttataatgaaataattattggtcaaatatttaaacagttgaatcctaaatacgtgcgcgccttattcagtggaacggagggagtagtatcttttgtgctagtgttgaaagaaaaagggacagtagaagttactgcaagtaaaggtatcagcaattggcaaatggtaataatatgatatgcagaaaaggaatttgtgtagagaaccagagaatagacatgaaggtgcaatgcaatgtactacattcagtttgtacaattaatttagttttttaaaatatcttttctgacattactgaacgggtattcattgttaggttaagtttagcaaccgaatggatctgcagatagtactggatgaatttattttttttgttatctgttcttatgtatttggtaaataaattatcaatgtacaccaatctaaatagcacagtaagactatacgagtgcttctactaaaagtagttcatgctaatatgatgcggatatcttatagtttcactttcacaccgctaggatatttttaaggcagttgtgtttcaatatgttgttgaaagtcgctaatgattgtagggtacacttggctagaactatttcctcgtactggaagaaagcatcaggtaattgttttatctctgaacaacatggcttttgtttgactgcttgcatgatatcataatcacattaaccactagaaatcttgatcccctttctacttgaactcacgcagctccgagttcactgtgcagaggttcttggaaccccaattgttggggattacaagtatggacggcaagcgcatcagaagtggatgcctcttcccctgccacggacaattgatgaggaactgctcaggaaaaggaagcttccctttgggcttgttgtgggtggcggaagcatcgctgaggagcaacctcagcttcatctacactgcaagcaaatggttcttcctgatgtctcagtggctcttcataggctgcagtcttcagacgttaatcctgatttctcagatcttgagaagctcaactttgttgctccactgccgttgcatatgcggttgagttgggagattttgaagtctgtgaagatttaagaaatttttttaaaaaaattcttgtctctctctctctctgtatgttctgcatatttaccacaatgtctgcctcttcttttcaaggtggctttttctttgtggtagctactaataccattctcctaggaaagattcaaagagaggtcctgcttt</dnaseqindica>

External Link(s)

NCBI Gene:Os09g0103500, RefSeq:Os09g0103500