BGIOSGA028006

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Revision as of 07:51, 26 June 2012 by 127.0.0.1 (talk) (Created page with "{{IndicaGene| GeneName = BGIOSGA028006| Description = Putative uncharacterized protein| Definition = Oryza sativa Indica Group BGIOSGA028006, complete gene.| tag = OJ1066_...")
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Gene Name

BGIOSGA028006

Description

Putative uncharacterized protein

Definition

Oryza sativa Indica Group BGIOSGA028006, complete gene.

LocusTag

OJ1066_B03.125

Ensembl Transcript ID

BGIOSGA028006-TA

Ensembl Protein ID

BGIOSGA028006-PA

Length

4921

Source

Oryza sativa Indica Group

 ORGANISM  Oryza sativa Indica Group
           Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
           Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; BEP
           clade; Ehrhartoideae; Oryzeae; Oryza.
Chromosome

Chromosome 8

Location

Chromosome 8:3257062..3261982

Sequence Coding Region

3257062..3258291,3258432..3258626,3258740..3258820,3259171..3259230,3259313..3259407
,3259507..3259663,3259743..3259868,3260246..3260326,3260405..3260495
,3260583..3260716,3260916..3260984,3261067..3261156,3261253..3261356
,3261442..3261610,3261914..3261982

Genome Context

<gbrowseImage1> name=IndicaChromosome08:3257062..3261982 source=RiceIndica08 preset=GeneLocation </gbrowseImage1>

Gene Structure

<gbrowseImage2> name=IndicaChromosome08:3257062..3261982 source=RiceIndica08 preset=GeneLocation </gbrowseImage2>

Coding Sequence

<cdnaseq>ATGGCTGTTGTCGATCCTGTTATGTTTGACAACGACGACGAGGAAGGTCCGATCTCCTTCAAGAGGTCGAGCACCTCTGTGAAGAACAGGCCCACCCCCACAAAGCAGGAGGGCTCATCAGGGAATGCCGGACCTATTAGGAGCCCTAAGGCTGTTGCTTCCAATCAACAGAAGAATGGGCTGACTGGTGTTTCGAGGCCTTTGCAACAGAGGCCGCAGTCAAGCAGTCCAAACCCTCGACCTTTAGGATCAGGTCAGCCGAACAGTTCCAAAGAACATAGTAGCCATAATAGTAACTCAGTGGATAAGAGTAAATTGAAAAGACCTTTCGTGGAAGATAAGTCGGATGACTCAGAAGATGACCATAAGCCAATCGGATTAAGGAGAAAGGTCGAGGATAGAAATTTGAAGAAACCTGCTGTAGGAAGTGGGACAGCAAATGATTCAGATGATGATAAACCATTGAGTCTCAAGATAAACTCAACAAAAACGCCTTCGAGTAGTGCAAATAAGGCTATTGTACTGAAAACTACACCTAAAATTGAGCAACCTGGTGATGATTCAGAGGACGATAAACCACTGGCCAGCAGGTTGCCAACTAATGCTGCTCTGAAAAGGGGAGGTAATGTTTCTGATGATTCAGAGGATGAGAAGCCATTGGCTGCCCGATTTTCGAAAGTTACTGGCAATGCATCTGCAAGTATCTCAAGTTCAAAGGACAAGGTCCTGTCTGCAAGTATAAAAGCAAGTTCTTCCAGCAAGATGTCTAACAATGACGCGAGCACATCACGAAATTCAATTAAAAGGCCAATTGACAATAATAATCAAACAAGTTCAGCTCTCAAGAAGGCGAGGCCTTCAGATGTTTCTGCGTCTGCAAGTGTCAAAAGAGAACCCAAGGCGGATGACAATGACAATGTACCTCTTTCACAAAGACTGAAAATGGGTGAGTCTTCAAAAAGCAAGCCACCTGCAAAGAATATTGTAAAGAAGAGTCCTTCATCTTTAAAGAAGGACAACAAGAAAATGAAAATGAAACTGAAAACAAAGAAAACAATGAAAAATTCTCAGTTCTCAAAGACAATGAAGGTCCCTCCTGGATCTGGTGGTGGACAGAAATGGACTACCTTGGTGCACAGTGGTGTTATTTTCCCCCCTCCATACAAGCCTCATGGTGTCAAGATCCTTTACAACGGGCAACCTGTTGATCTGACGCCAGAACAAGAAGAGGTTGCCACCATGTTTGCTGTGATGAAAGACACTGATTATGCATCCAAGCAAACATTCATTGACAACTTCTTCACTGATTGGAGAAAAATTCTTGGTAAAAACCATGTCATCAAGAAATTTGAGCTTTGTGATTTCACCCCGATCTATGAATGGCACCTAAGAGAGAAGGAGAAGAAGAAGCAGATGACATCTGAGGAGAAGAAAGCATTGAAGGAAGAGAAATTGAAACAAGAGGAGAAGTACATGTGGGCTATTGTAGATGGTGTTAAAGAGAAGGTTGGCAATTTCAGAGTAGAACCACCTGGCTTGTTCAGGGGGCGCGGAGAGCATCCGAAGATGGGAAAACTGAAGCGCCGCATTAAACCAAGCGATATTACAATAAATATCGGAAAAGGGGCTCCGATCCCCGAATGTCCCATACCTGGAGAAAGTTGGAAAGAAGTCAAACACGACAACACAGTTACATGGTTGGCCTTTTGGAATGATCCAATAAGCCAAAAAGATTTCAAGTATGTTTTCTTGGCAGCAAGCAGTGCATTAAAGGGCCAAAGTGACAAAGAGAAGTATGAGAAGTCTCGAAAATTGAAGCATCACGTACACAAAATTCGTGACACTTACACAAAGGATTTCAGAAGCAAAGATAAGACAAAGAAACAAATTGCAGTGGCAACATACCTTATAGATAAGTTAGCCCTTAGGGCAGGCAATGAGAAGGATGAAGATGAGGCTGAAACTGTTGGTTGCTGTACACTGAAGGTTGATAATGTTACTTGTGTTCCTCCAAATAAACTGCAGTTCGACTTCCTTGGTAAAGATTCTATAAGATACTTCAATACTGTAGAGGTTGAACTGCTTGTATACAAGGCAATTGAGGAATTCCGTGCTGGCAAGAAACCAGGACAAGATCTCTTTGACAAACTCGATACAACCAGGCTAAATGCTCATCTAAAGGACTTGATGCCTGGGCTTACCGCAAAAGTGTTCCGTACATATAATGCTTCAATCACCTTGGATGATATTTTGCACAAAGAAACAGAAGATGGAACTCTTCTTGAAAAAATTGCGGTTTATCAACGAGCCAACAAAGAGGTTGCTATAATCTGTAACCATCAGCGTAGTGTCTCAAAATCACATGATTCCCAGATGACTAGATTGAATGAGAAGATTGATGAATTGAAGGCCCAAAGGGATGAATTGAAGGCAGACTTGAGCAAAGTAAGGAAAGGAAAGAATCTAGGCAATGACAAAGATGGGAAACCAAAAAGAAATTTGGCCCCTGAAGCGTTTGAAAAGAAGATATCTCAGATTGAAACCAAGATAGAGAAGATGGAGATGGATAAGAAGATTAAAGAGGATTTAAAGACAGTGGCACTAGGAACTTCAAAGATCAATTACCTTGATCCCAGAATTACTGTTGCATGGTGCAAACGCCATGAAGTACCCATCGAGAAGATTTTCAACAAATCACTCATTGCGAAATTTTCGTGGGCAATGGACGTCGACCCAGATTTCAGATTTTAA</cdnaseq>

Protein Sequence

<aaseq>MAVVDPVMFDNDDEEGPISFKRSSTSVKNRPTPTKQEGSSGNAGPIRSPKAVASNQQKNGLTGVSRPLQQRPQSSSPNPRPLGSGQPNSSKEHSSHNSNSVDKSKLKRPFVEDKSDDSEDDHKPIGLRRKVEDRNLKKPAVGSGTANDSDDDKPLSLKINSTKTPSSSANKAIVLKTTPKIEQPGDDSEDDKPLASRLPTNAALKRGGNVSDDSEDEKPLAARFSKVTGNASASISSSKDKVLSASIKASSSSKMSNNDASTSRNSIKRPIDNNNQTSSALKKARPSDVSASASVKREPKADDNDNVPLSQRLKMGESSKSKPPAKNIVKKSPSSLKKDNKKMKMKLKTKKTMKNSQFSKTMKVPPGSGGGQKWTTLVHSGVIFPPPYKPHGVKILYNGQPVDLTPEQEEVATMFAVMKDTDYASKQTFIDNFFTDWRKILGKNHVIKKFELCDFTPIYEWHLREKEKKKQMTSEEKKALKEEKLKQEEKYMWAIVDGVKEKVGNFRVEPPGLFRGRGEHPKMGKLKRRIKPSDITINIGKGAPIPECPIPGESWKEVKHDNTVTWLAFWNDPISQKDFKYVFLAASSALKGQSDKEKYEKSRKLKHHVHKIRDTYTKDFRSKDKTKKQIAVATYLIDKLALRAGNEKDEDEAETVGCCTLKVDNVTCVPPNKLQFDFLGKDSIRYFNTVEVELLVYKAIEEFRAGKKPGQDLFDKLDTTRLNAHLKDLMPGLTAKVFRTYNASITLDDILHKETEDGTLLEKIAVYQRANKEVAIICNHQRSVSKSHDSQMTRLNEKIDELKAQRDELKADLSKVRKGKNLGNDKDGKPKRNLAPEAFEKKISQIETKIEKMEMDKKIKEDLKTVALGTSKINYLDPRITVAWCKRHEVPIEKIFNKSLIAKFSWAMDVDPDFRF</aaseq>

Gene Sequence

<dnaseqindica>1..1230#1371..1565#1679..1759#2110..2169#2252..2346#2446..2602#2682..2807#3185..3265#3344..3434#3522..3655#3855..3923#4006..4095#4192..4295#4381..4549#4853..4921#ATGGCTGTTGTCGATCCTGTTATGTTTGACAACGACGACGAGGAAGGTCCGATCTCCTTCAAGAGGTCGAGCACCTCTGTGAAGAACAGGCCCACCCCCACAAAGCAGGAGGGCTCATCAGGGAATGCCGGACCTATTAGGAGCCCTAAGGCTGTTGCTTCCAATCAACAGAAGAATGGGCTGACTGGTGTTTCGAGGCCTTTGCAACAGAGGCCGCAGTCAAGCAGTCCAAACCCTCGACCTTTAGGATCAGGTCAGCCGAACAGTTCCAAAGAACATAGTAGCCATAATAGTAACTCAGTGGATAAGAGTAAATTGAAAAGACCTTTCGTGGAAGATAAGTCGGATGACTCAGAAGATGACCATAAGCCAATCGGATTAAGGAGAAAGGTCGAGGATAGAAATTTGAAGAAACCTGCTGTAGGAAGTGGGACAGCAAATGATTCAGATGATGATAAACCATTGAGTCTCAAGATAAACTCAACAAAAACGCCTTCGAGTAGTGCAAATAAGGCTATTGTACTGAAAACTACACCTAAAATTGAGCAACCTGGTGATGATTCAGAGGACGATAAACCACTGGCCAGCAGGTTGCCAACTAATGCTGCTCTGAAAAGGGGAGGTAATGTTTCTGATGATTCAGAGGATGAGAAGCCATTGGCTGCCCGATTTTCGAAAGTTACTGGCAATGCATCTGCAAGTATCTCAAGTTCAAAGGACAAGGTCCTGTCTGCAAGTATAAAAGCAAGTTCTTCCAGCAAGATGTCTAACAATGACGCGAGCACATCACGAAATTCAATTAAAAGGCCAATTGACAATAATAATCAAACAAGTTCAGCTCTCAAGAAGGCGAGGCCTTCAGATGTTTCTGCGTCTGCAAGTGTCAAAAGAGAACCCAAGGCGGATGACAATGACAATGTACCTCTTTCACAAAGACTGAAAATGGGTGAGTCTTCAAAAAGCAAGCCACCTGCAAAGAATATTGTAAAGAAGAGTCCTTCATCTTTAAAGAAGGACAACAAGAAAATGAAAATGAAACTGAAAACAAAGAAAACAATGAAAAATTCTCAGTTCTCAAAGACAATGAAGGTCCCTCCTGGATCTGGTGGTGGACAGAAATGGACTACCTTGGTGCACAGTGGTGTTATTTTCCCCCCTCCATACAAGCCTCATGGTGTCAAGATCCTTTACAACGGGCAACCTGTTGATCTGACGCCAGAACAAGAAGAGGTGAGATATATAACATTAGCTGATTTTTACTTTACTTTTCATCTTTTGATTTGTACCATGAGTGACATTTTAATCAGGTTCTCCTGAATCCATATCTTGCTACCAGATAATTGTTCCTCTACTAATTATCTCTGTTACAGGTTGCCACCATGTTTGCTGTGATGAAAGACACTGATTATGCATCCAAGCAAACATTCATTGACAACTTCTTCACTGATTGGAGAAAAATTCTTGGTAAAAACCATGTCATCAAGAAATTTGAGCTTTGTGATTTCACCCCGATCTATGAATGGCACCTAAGAGAGAAGGAGAAGAAGAAGCAGATGACATCTGAGGTACTGCATGTTTTGTTTTGACTTATTCAGCAGAATGAATTTAGTTTTTGTGCTGGTAATCTATAAAAAGTTGTCTACGGAAGTGATCAATCTTTAAAATTCTTCTTCTGCAGGAGAAGAAAGCATTGAAGGAAGAGAAATTGAAACAAGAGGAGAAGTACATGTGGGCTATTGTAGATGGTGTTAAAGAGAAGGTATTTTTCTTTGTGCTGCAAAAATGTAGTTACAGAAAGTTATGGCTAGTAATTGTAGATATTTCTCTTGTTCCCCATTCTTCTGTTATTGTTAGGTAAATGTTTTTTTTATTATAATCTAGCAATTGTTTTGTTTTACCCTATTGTTCAATTTTGTGAATAATTTTGCACCAGATGTCAACAATGCATACCATGTGTTATACTTAGTTTGCTTCATGACATGTAATGTTGCCTCGATGTTCTTATTTTTTTTTAACATACATGACAGCTGTGTCATCTTCTATCTGCTGTGCATACTAGGTTCATTTCGCATAAAATTACTCTGGGTTAAAGTACTTTGTTCCTTTCAGGTTGGCAATTTCAGAGTAGAACCACCTGGCTTGTTCAGGGGGCGCGGAGAGCATCCGAAGGTATATATATGGATACATATACTCGTCGTGCTGTTTTAAGTAAGCGACATCATTTTGATGCTTTTTTATTACATCGTTTTAGATGGGAAAACTGAAGCGCCGCATTAAACCAAGCGATATTACAATAAATATCGGAAAAGGGGCTCCGATCCCCGAATGTCCCATACCTGGAGAAAGGTACGCTGGAAATTTTCCCATTACCTTTGATGTGTAATTTATATTTGTGAAGGGGTTGCTAGTATGTGCTCACTCTTTATTTGGTCATGTGTACTGCAGTTGGAAAGAAGTCAAACACGACAACACAGTTACATGGTTGGCCTTTTGGAATGATCCAATAAGCCAAAAAGATTTCAAGTATGTTTTCTTGGCAGCAAGCAGTGCATTAAAGGGCCAAAGTGACAAAGAGAAGTATGAGAAGTCTCGAAAATTGAAGGTGAGAGGGTTCATTGTTTGTGTCATGGAGTTGTTGAGTTTGCATGTACAAATAATTTTTTTCTGCTTGGTCATTGCAGCATCACGTACACAAAATTCGTGACACTTACACAAAGGATTTCAGAAGCAAAGATAAGACAAAGAAACAAATTGCAGTGGCAACATACCTTATAGATAAGTTAGCCCTTAGGGCAGGCAATGAGAAGGTACTTTCTAACCTGAGCTCTCTGACTGACATTTATGAATTGGGATATATTTCTTCTGCTATCGGTGCAGATTGCACAGTAATCTCCCCCGCAACCAACCAATAACAAAAAAAAAAAAGGAATATGTGCCTTCTGTTCCGACATCTCTTCTGAATGGATATTTACACTATGCAACATAGCGTTTTGGTTCAAGACTGTATCTAGGATTAGCTGTGTGGCTGCTCATCATAATTTTGCATAATGGTCAACATAATGCGCATAGATTTTTGTTAGAATACAATCTTCAACAATGACATACATATAGTTTATTAAATAGCTTTGAATTACAGTGACATACATAGTTTGTATACTTAGCCACTACTTCAAATTCTTTTCAGGATGAAGATGAGGCTGAAACTGTTGGTTGCTGTACACTGAAGGTTGATAATGTTACTTGTGTTCCTCCAAATAAACTGCAGGTATTGGTCTTCATTATTAATAAATTCTGCATGTGTAACTTGATTTAGATGATATCTGATGTTCCATAACCTTTACAGTTCGACTTCCTTGGTAAAGATTCTATAAGATACTTCAATACTGTAGAGGTTGAACTGCTTGTATACAAGGCAATTGAGGAATTCCGTGCTGGTAACTCTGCCCTGCAACTCTTTCTTTCCCTCCGATCCTCACCTTGCACTAGTGGAATCACTTCTGTTTTCTTAATCTTTATTCTAGGCAAGAAACCAGGACAAGATCTCTTTGACAAACTCGATACAACCAGGCTAAATGCTCATCTAAAGGACTTGATGCCTGGGCTTACCGCAAAAGTGTTCCGTACATATAATGCTTCAATCACCTTGGATGATATTGTAAGTTCAGATAGATCTTCACATCTTTTTCTTAAACTTTCACTGCTGTATGAAGTGATTGATTGAAGTTTGTCATGGTTTAAGACATTTTAGTAGTATATATGTTGTTCCGTTCTGTTTACTTGAAGCTCAAGTGCGTAACGTGTTATTTCACAATAGTTGTTTTCTGAACGTATGTCTATTGGTGCTGATTTTACAGTTGCACAAAGAAACAGAAGATGGAACTCTTCTTGAAAAAATTGCGGTTTATCAACGAGCCAACAAAGAGGTCTATTGTGTTTCTCTTTAAGAAATAGAAAAAACTTATATTTGACCTGTTTTGATCTCAACCATACTTCTTGTTTACTCAGGTTGCTATAATCTGTAACCATCAGCGTAGTGTCTCAAAATCACATGATTCCCAGATGACTAGATTGAATGAGAAGATTGATGAATTGAAGGTTGAATTTCTACTGCAAATGATTAGCCCAACATTGTACCATTTCATTCTTTTGTCCTTTTCTGGTAAACTCTCTTGTTTTTTTTCTTTTCTCCAGGCCCAAAGGGATGAATTGAAGGCAGACTTGAGCAAAGTAAGGAAAGGAAAGAATCTAGGCAATGACAAAGATGGGAAACCAAAAAGAAATTTGGCCCCTGAAGCGTAATAATCTCAATCACAGATAGATCTCTATTTTGTATATATACAAAAAAACAATGTTGAGAAATCTCACCAAATTTGCTTGCAGGTTTGAAAAGAAGATATCTCAGATTGAAACCAAGATAGAGAAGATGGAGATGGATAAGAAGATTAAAGAGGATTTAAAGACAGTGGCACTAGGAACTTCAAAGATCAATTACCTTGATCCCAGAATTACTGTTGCATGGTGCAAACGCCATGAAGTACCCATCGAGAAGGTAACAGTGCTTTAGGACAACTCTATTTTTCTTTCCATATGAATTGGCCTATGCAAAGTTGACAGGCACATCCTCATTGTTCTTATCGAGATTACACTTCATTTTATATTGGGGGTGGGATTCTGTTCAACTAAACTATAACTGTGCATACAAAAAAACATTTGATTTGAAATCCTGGATATTTGAAATGATAATAGTCTGTCGTCATTGCATCCTGAACAAAGTAAAATTTTCATTTGGCATATGATCAAATCAAATGATTGAACCGATTACATTAACTGACAGTACTGTTCGCCTTGACAGATTTTCAACAAATCACTCATTGCGAAATTTTCGTGGGCAATGGACGTCGACCCAGATTTCAGATTTTAA</dnaseqindica>

External Link(s)

EnsemblPlants:BGIOSGA028006