Os11g0157600

From RiceWiki
Revision as of 09:01, 21 June 2012 by 127.0.0.1 (talk) (Created page with "{{JaponicaGene| GeneName = Os11g0157600| Description = Similar to Timing of CAB expression 1| Version = NM_001072334.1 GI:115484280 GeneID:4349831| Length = 4718 bp| Defi...")
(diff) ← Older revision | Latest revision (diff) | Newer revision → (diff)
Jump to: navigation, search
Gene Name

Os11g0157600

Description

Similar to Timing of CAB expression 1

Version

NM_001072334.1 GI:115484280 GeneID:4349831

Length

4718 bp

Definition

Oryza sativa Japonica Group Os11g0157600, complete gene.

Source

Oryza sativa Japonica Group

 ORGANISM  Oryza sativa Japonica Group
           Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
           Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; BEP
           clade; Ehrhartoideae; Oryzeae; Oryza.
Chromosome

Chromosome 11

Location

Chromosome 11:2772223..2776940

Sequence Coding Region

2772595..2772736,2773859..2773989,2774274..2774387,2774705..2774861,2774979..2775402
,2775640..2776432,2776584..2776694

Expression

GEO Profiles:Os11g0157600

Genome Context

<gbrowseImage1> name=NC_008404:2772223..2776940 source=RiceChromosome11 preset=GeneLocation </gbrowseImage1>

Gene Structure

<gbrowseImage2> name=NC_008404:2772223..2776940 source=RiceChromosome11 preset=GeneLocation </gbrowseImage2>

Coding Sequence

<cdnaseq>atgaaggcgtggggggtgatgcgggagcgggcgtacgccttcgacctcgtgctcacggaggtcactatgcccacgctctccggcatcgagctgctctccaggatcgtcgcctccgacgagtgcaagaacatccccgtcataatgatgtcgtcccaagattctattggcacagtgctcaggtgcatgcagaagggtgcggtggatttccttgtgaaaccagtgagaaagaatgaattgcgtaacttatggcaacatgtatggaggcgacatgcaatgaatagccaaacaaatgcatcggaaaacaatgcggctagcaatcatttaagtgccaatggtggtaatgggtcaaagacaggagaacacagcgatgaggaaagtgatgctcagagttctggtagcaaaagggaggttgaaattcaaagtgctgaaaagttaccagaggttgttgcagatggtggggcaggctcatccagagaacataaaatacagaatggtttcattgatggaatgaacacaaaatcacatgcattaaagggtaatgatgatgctccaagtggaaacgcgtgtggtgatagtgaactacaagtgctttcaactgagaagaatgtgcgttccaaattccttaatggtattacttctgcgaaggttgctggacagataatggataatgccttgaggtttgctgattcaagttcacttcgttcaagtgatcctggaaaagatcttttggttgttgcccagaccacagctgacagaaaatgcaaatcttcagcactggaaaataatgctgtcatggaaaataaccttagtgaaaattcaaaggggactgcaacaggccatgctgaatcttgtccgtctcactttgtggagataaatttagaaaagcaacatcatctcaatggttatacaaaccacaagttgaatgagaaagatatctttaatcactcaaattcctctgccttttcgaggtatggtaataagaggatagaatcatcagctcaacggccatttcccccttccttccgcgtggttcaccaacaacctgtttacgacaagaatccccaatccagccgggtcttgctttcctgtgaacataatacacgcgagagtacagtgcaagctcaggtccctttggacagaagcacagagggtgctgcaatcctgtgttccagtagtgtaagagaagatgctggtacaagcagttcctctcctagaaaggacagtttaactcatccttcttatgggtttatacctgttccaattcctgttggtgctgctataccctaccactacggtgcaattatgcagccaatgtattatccacagggtgcttttatgcattgtgattcagctgccatcaacaagacagcaattcagcatgtctcttgtcaatctaactaccatgaaaatcttggtaaaccgccacagattgatgagcacaagcagccagaagaaaaccatcagttgcatcattcaagacaaattctccgagaatcaggagaaccagttgacttggcgaaggctcatatggagcgtattaaccagagtgctagctgtagccaggatattcgcaaaggaagtggatgcactgggagcggtgaaactgatgcaaatacaaatacggtaattgcactagaaagtggcaatgagagcggtgtccagaactgcagtaataatgtattggatggtgaccggtctcgccgtgaagctgccttgttgaaattccggatgaaaagaaaagatagatgtttcgagaaaaaggtcaggtatcatagcaggaagaagcttgcagaacaaagacccagggttaagggccagtttgtgagccaaaaactgaagtcagctataacaacagaggcagaaactgactag</cdnaseq>

Protein Sequence

<aaseq>MKAWGVMRERAYAFDLVLTEVTMPTLSGIELLSRIVASDECKNI PVIMMSSQDSIGTVLRCMQKGAVDFLVKPVRKNELRNLWQHVWRRHAMNSQTNASENN AASNHLSANGGNGSKTGEHSDEESDAQSSGSKREVEIQSAEKLPEVVADGGAGSSREH KIQNGFIDGMNTKSHALKGNDDAPSGNACGDSELQVLSTEKNVRSKFLNGITSAKVAG QIMDNALRFADSSSLRSSDPGKDLLVVAQTTADRKCKSSALENNAVMENNLSENSKGT ATGHAESCPSHFVEINLEKQHHLNGYTNHKLNEKDIFNHSNSSAFSRYGNKRIESSAQ RPFPPSFRVVHQQPVYDKNPQSSRVLLSCEHNTRESTVQAQVPLDRSTEGAAILCSSS VREDAGTSSSSPRKDSLTHPSYGFIPVPIPVGAAIPYHYGAIMQPMYYPQGAFMHCDS AAINKTAIQHVSCQSNYHENLGKPPQIDEHKQPEENHQLHHSRQILRESGEPVDLAKA HMERINQSASCSQDIRKGSGCTGSGETDANTNTVIALESGNESGVQNCSNNVLDGDRS RREAALLKFRMKRKDRCFEKKVRYHSRKKLAEQRPRVKGQFVSQKLKSAITTEAETD</aaseq>

Gene Sequence

<dnaseqindica>373..514#1637..1767#2052..2165#2483..2639#2757..3180#3418..4210#4362..4472#ctcccgacgccgacgcggcggcggcggcggcggccggcggcgagggcgcggcggcggcgggggtggggacggcgggtgaagggcggggggtgatccggtgggaccagatcctgccgcggcggtccctccgcgtgctgctcgtcgagcacgacgactccacccgccaggtcgtcaccgcgctcctccgcaagtgcggctaccgcggtgagtacccctcgctctctccctacctaaaccctaatcgctctcctctcctcgcgattgattgctattgagagttttctgaggagggaattgggggggattggttccctgtttgccctgtgtgctcgttttgatcggaggtgagcagtggcggcggtggcggacgggatgaaggcgtggggggtgatgcgggagcgggcgtacgccttcgacctcgtgctcacggaggtcactatgcccacgctctccggcatcgagctgctctccaggatcgtcgcctccgacgagtgcaagaacatccccgtcataagtaagcttcccttcgatgttctccccaacttcttctccgtactagttgattttagctgaaattcttgtggcgtgtggcccaaaccgaagctgccaagcggagtagagtacacctcactatccacagcttactttaagcaacgaactctgtgttagtttttgatgccaagtgcttcattttggcgggcaattttatcgctggatgactgcacacccgagctattgcaactggataacttgtgatgttctcaaatgaataaatgcttgtgatgtaattttgtaataatagctttatcaaaattgaatcgctcttgctgaattccatttctgctattgcttgagatgttgctgaatattgtttcttacaagattagtcctgtataagtatcactggatggatttattacaggatgttaattatgggattggaggtagtttattcgcaaaatttcaacggtaaccatgtgtcttttgtatggaatttgacagtcaggccttttctggatagccctgaatcccagcccgtccacatctgtggacctggattttagttcaaaatccttgtccgtacacgtcacgtggatgtgtgggattgaggcccactcaaacgtggcctaaaaaataggattgaacatggggttgaatctgaaatttcatattaacacgggcttatatttaaggttctatatataaacttctgattacataactccattgaggaaatacgctattccatgggtgtatggtgtatttaactgtgtatgagtatgaaccaaacaatcacacacacaagacttgaattcttccaaatatcaattgctgctacttttggaaattatattaggaaattattgagttttgatgttcttaatagtggttaagaataaggagaacaaggacatccttgcaaagcgcttataaacaagtgcctatttgactgtaatctatgtgctaaatactggattcaggcaatgagacatataaattaaatttgtatatttataggcactaaaatatgttatcctcagtgcatgcttcaaggagagagacatgtatgcaccatgtgagcaatgcaatcactaagcctaatcttcatgatgtttcactgggttgtctattgcagtgatgtcgtcccaagattctattggcacagtgctcaggtgcatgcagaagggtgcggtggatttccttgtgaaaccagtgagaaagaatgaattgcgtaacttatggcaacatgtatggaggcgacatgcagtaagctcctctctctgctcgtcttttaagacttcctttttcagtcagtcctttgatccatgtggaaatataatcttccttggttgtattgtgtggtttatattggtcaatctaaatctagattcatttttttattccaattgtatagctgtaccctaatgtgatgtgcagtaattttggttgtcaagattgtgaatgctacatagttatgttataatatatgcttttagtaaatatcaatacttgtgagcacttctctgagcccactggaaattccaatgcagatgaatagccaaacaaatgcatcggaaaacaatgcggctagcaatcatttaagtgccaatggtggtaatgggtcaaagacaggagaacacagcgatgaggaaagtgatgctcaggtgagcatgtgtgctagtttatacctagtctgtcttatgttgtcagcacacgtcaaaattcttcattcctaagttcattgaagccaaacagaaaaaagaagtttgaaagctgtgaactgctaaagttatttgattaagctcgattttctatcatttttttatcaggactttatcctgtaaatttgaccagtattgtttactaaagcaagttagagttcatcataactgatcttctatgaagttctgatgtctattttaaattcattattggaattcttctgcacctaacataatggtggctcttttaccttgatcagagttctggtagcaaaagggaggttgaaattcaaagtgctgaaaagttaccagaggttgttgcagatggtggggcaggctcatccagagaacataaaatacagaatggtttcattgatggaatgaacacaaaatcacatgcattaaagggtaatgatggtaaggaatttagacatggttatctgatctttgattttcatgtgcctctattggctattgagtgtcaactttgcatatgaggacatgtgatagttattgctatttaaccttttgtagatgctccaagtggaaacgcgtgtggtgatagtgaactacaagtgctttcaactgagaagaatgtgcgttccaaattccttaatggtattacttctgcgaaggttgctggacagataatggataatgccttgaggtttgctgattcaagttcacttcgttcaagtgatcctggaaaagatcttttggttgttgcccagaccacagctgacagaaaatgcaaatcttcagcactggaaaataatgctgtcatggaaaataaccttagtgaaaattcaaaggggactgcaacaggccatgctgaatcttgtccgtctcactttgtggagataaatttagaaaagcaacatcatctcaatggttatacaaaccacaagttgaatgagaaagatatctttaatcactcaaattcctctgccttttcgaggtactagtttttaaagtttgaaatttcatccaaataaattctggtttaaataatgttggtttctgagtggggtttgttttgcatgcccatttgtttctttatgctgttatactattttgctagttctagtccattccctcttggggtagatataagtaattgcttgcgtgcatatgattttataactcttgctagctttatttgcttgttcatcacatggttggcaacctgtcacaggtatggtaataagaggatagaatcatcagctcaacggccatttcccccttccttccgcgtggttcaccaacaacctgtttacgacaagaatccccaatccagccgggtcttgctttcctgtgaacataatacacgcgagagtacagtgcaagctcaggtccctttggacagaagcacagagggtgctgcaatcctgtgttccagtagtgtaagagaagatgctggtacaagcagttcctctcctagaaaggacagtttaactcatccttcttatgggtttatacctgttccaattcctgttggtgctgctataccctaccactacggtgcaattatgcagccaatgtattatccacagggtgcttttatgcattgtgattcagctgccatcaacaagacagcaattcagcatgtctcttgtcaatctaactaccatgaaaatcttggtaaaccgccacagattgatgagcacaagcagccagaagaaaaccatcagttgcatcattcaagacaaattctccgagaatcaggagaaccagttgacttggcgaaggctcatatggagcgtattaaccagagtgctagctgtagccaggatattcgcaaaggaagtggatgcactgggagcggtgaaactgatgcaaatacaaatacggtaattgcactagaaagtggcaatgagagcggtgtccagaactgcagtaataatgtattggatggtgaccggtctcgccgtgaagctgccttgttgaaattccggatgaaaagaaaagatagatgtttcgagaaaaaggtactttgtttgacaaacctatatttagttttttgcatataaggctgagcatttatcatatactctgcacaaatatgcctactatcctttagatcttcgatcattcttctgaatctgtatctcagtatttgtgcatctctcgtttgtacaggtcaggtatcatagcaggaagaagcttgcagaacaaagacccagggttaagggccagtttgtgagccaaaaactgaagtcagctataacaacagaggcagaaactgactagtgacaccgttaactcatactgtacttttgatacttcccttctcagcgaagggcattcgaagtaacccgtgtaagttaaaggctggcaacagttttccttccgtagttagccttttgtacaagtgctctcttcttttgtcggttgtttattggcttccatgccataccttgtaaagacctcaaattgataaaagtgttcagggggtaaagaaattttcaatgcaggtatccatatttctcttgtttc</dnaseqindica>

External Link(s)

NCBI Gene:Os11g0157600, RefSeq:Os11g0157600